version 1.0
Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853, complete genome - 1..4842908 4514 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 1 56.15 0 337..2799 + 820 198244353 thrA SeD_A0002 - aspartokinase/homoserine dehydrogenase I 2 57.74 0 2801..3730 + 309 198244850 thrB SeD_A0003 - homoserine kinase 3 56.49 0 3734..5020 + 428 198242395 thrC SeD_A0004 - threonine synthase 4 50.13 0 5114..5887 - 257 198242886 - SeD_A0005 - protein YaaA 5 55.90 0 5966..7423 - 485 198245613 - SeD_A0006 - amino-acid carrier protein AlsT 6 54.40 0 7665..8618 + 317 198241895 tal2 SeD_A0007 - transaldolase 7 56.01 0 8729..9319 + 196 198244752 mog SeD_A0008 - molybdopterin biosynthesis protein Mog 8 54.32 0 9376..9942 - 188 198245990 - SeD_A0009 - membrane protein, GPR1/FUN34/yaaH family 9 54.20 0 10092..10805 - 237 198243756 - SeD_A0010 - positive regulator for sigma H 10 50.00 0 10841..11236 - 131 198244504 - SeD_A0011 - protein YaaI 11 52.48 0 11594..13510 + 638 198242776 dnaK SeD_A0012 - chaperone protein DnaK 12 54.04 0 13596..14735 + 379 198243023 dnaJ SeD_A0013 - chaperone protein DnaJ 13 27.19 -2 14847..14960 + 37 198245221 - SeD_A0014 - hypothetical protein 14 40.40 -1 15016..15963 + 315 198245711 - SeD_A0015 - putative transcriptional regulator, LysR family 15 39.93 -1 16132..16434 + 100 198244921 - SeD_A0016 - putative bacteriophage protein 16 51.12 0 16495..17028 - 177 198243700 - SeD_A0017 - hypothetical protein 17 38.51 -2 17045..17488 - 147 198241808 - SeD_A0018 - hypothetical protein 18 51.19 0 17869..19968 + 699 198242422 - SeD_A0019 - exochitinase 19 54.92 0 20060..23056 + 998 198242908 - SeD_A0020 - putative hydroxymethyltransferase 20 46.81 0 23337..24041 + 234 198243657 - SeD_A0021 - putative cytoplasmic protein 21 51.75 0 24471..25013 + 180 198242187 - SeD_A0022 - fimbrial subunit 22 50.97 0 24973..25800 + 275 198242340 - SeD_A0023 - chaperone protein FimC 23 54.46 0 25805..28426 + 873 198245430 - SeD_A0024 - outer membrane usher protein FimD 24 50.00 0 28427..29434 + 335 198246163 - SeD_A0025 - mannose binding protein FimH 25 49.51 0 29474..29980 + 168 198245849 - SeD_A0026 - fimbrial subunit 26 55.88 0 29996..30514 + 172 198245050 - SeD_A0027 - fimbrial subunit 27 54.87 0 30576..31211 + 211 198243542 - SeD_A0028 - fimbrial chaparone 28 37.11 -2 32546..32995 - 149 198245062 - SeD_A0031 - hypothetical protein 29 38.31 -2 33365..34369 + 334 198244833 - SeD_A0032 - putative transcriptional regulator 30 36.51 -2 34377..34817 - 146 198244219 - SeD_A0033 - putative transcriptional regulator 31 29.93 -2 34829..34975 + 48 198245122 - SeD_A0034 - hypothetical protein 32 46.36 0 35340..37058 + 572 198242535 - SeD_A0035 - arylsulfotransferase 33 46.95 0 37104..38675 - 523 198242289 - SeD_A0036 - 5'-Nucleotidase domain protein 34 44.36 -1 38774..39535 - 253 198242182 - SeD_A0037 - putative outer membrane/exported protein 35 52.61 0 40129..41622 + 497 198243820 - SeD_A0038 - sulfatase 36 49.54 0 41721..42911 + 396 198243215 - SeD_A0039 - chondroitin sulfate/heparin utilization regulation protein 37 50.16 0 42936..44183 + 415 198244819 - SeD_A0040 - putative cytoplasmic protein 38 49.88 0 44310..46025 + 571 198244177 - SeD_A0041 - arylsulfotransferase 39 56.30 0 46188..47354 + 388 198245761 nhaA SeD_A0042 - Na+/H+ antiporter NhaA 40 50.44 0 47416..48315 + 299 198242822 - SeD_A0043 - transcriptional activator protein NhaR 41 54.41 0 48370..50409 - 679 198242197 - SeD_A0044 - glycoside hydrolase, family 31 42 46.59 0 52278..52541 - 87 198242992 rpsT SeD_A0047 - ribosomal protein S20 43 44.90 -1 52716..52862 + 48 198244672 - SeD_A0048 - hypothetical protein 44 56.55 0 52870..53808 + 312 198244244 ribF SeD_A0049 - riboflavin biosynthesis protein RibF 45 54.55 0 53817..56687 + 956 198245825 ileS SeD_A0050 - isoleucyl-tRNA synthetase 46 53.09 0 56687..57187 + 166 198246069 lspA SeD_A0051 - signal peptidase II 47 54.22 0 57342..57791 + 149 198245423 fkpB SeD_A0052 - FKBP-type 16 kDa peptidyl-prolyl cis-trans isomerase 48 57.31 0 57794..58744 + 316 198242816 ispH SeD_A0053 - 4-hydroxy-3-methylbut-2-enyl diphosphate reductase 49 44.65 -1 58856..59014 - 52 198242213 - SeD_A0054 - hypothetical protein 50 56.57 0 60162..61082 + 306 198242945 - SeD_A0056 - Non-specific ribonucleoside hydrolase RihC 51 48.62 0 61104..61790 - 228 198245736 - SeD_A0057 - transcriptional regulatory protein CitB 52 47.50 0 61792..63450 - 552 198243185 - SeD_A0058 - sensor kinase DpiB 53 63.67 +1 63546..64847 - 433 198242548 - SeD_A0059 - oxaloacetate decarboxylase beta chain 54 64.07 +1 64860..66632 - 590 198242442 oadA SeD_A0060 - oxaloacetate decarboxylase alpha subunit 55 56.25 0 66648..66887 - 79 198241866 - SeD_A0061 - hypothetical protein 56 49.29 0 67046..68386 - 446 198243689 - SeD_A0062 - citrate-sodium symporter 57 53.49 0 68643..69674 + 343 198243054 citC SeD_A0063 - [citrate (pro-3S)-lyase] ligase 58 56.46 0 69704..69997 + 97 198244910 citD SeD_A0064 - citrate lyase acyl carrier protein 59 55.29 0 69994..70863 + 289 198244342 citE SeD_A0065 - citrate (pro-3S)-lyase, beta subunit 60 54.57 0 70874..72394 + 506 198246254 citF SeD_A0066 - citrate lyase, alpha subunit 61 55.99 0 72412..72945 + 177 198245785 citX SeD_A0067 - holo-ACP synthase CitX 62 54.90 0 72923..73831 + 302 198242726 citG SeD_A0068 - triphosphoribosyl-dephospho-CoA synthase CitG 63 56.69 0 74011..74832 + 273 198242536 dapB SeD_A0069 - dihydrodipicolinate reductase 64 47.97 0 74935..75057 - 40 198242571 - SeD_A0070 - hypothetical protein 65 35.90 -2 75483..75638 - 51 198245158 - SeD_A0071 - hypothetical protein 66 55.27 0 75696..76844 + 382 198242031 carA SeD_A0072 - carbamoyl-phosphate synthase, small subunit 67 58.71 +1 76863..80090 + 1075 198241932 carB SeD_A0073 - carbamoyl-phosphate synthase, large subunit 68 56.28 0 80836..81432 - 198 198243994 - SeD_A0075 - carnitine operon protein CaiE 69 56.36 0 81542..82327 - 261 198244072 - SeD_A0076 - carnitinyl-CoA dehydratase 70 50.71 0 82381..83934 - 517 198244202 - SeD_A0077 - probable crotonobetaine/carnitine-CoA ligase 71 53.22 0 83997..85268 - 423 198246082 - SeD_A0078 - crotonobetainyl-CoA:carnitine CoA-transferase 72 52.49 0 85326..86468 - 380 198243212 caiA SeD_A0079 - crotonobetainyl-CoA dehydrogenase 73 53.62 0 86503..88020 - 505 198245005 caiT SeD_A0080 - L-carnitine/gamma-butyrobetaine antiporter 74 29.03 -2 88248..88433 + 61 198242160 - SeD_A0081 - hypothetical protein 75 51.88 0 88501..89271 + 256 198242964 fixA SeD_A0082 - protein FixA 76 58.92 +1 89287..90228 + 313 198242315 fixB SeD_A0083 - electron transfer flavoprotein, alpha subunit 77 55.56 0 90278..91564 + 428 198241975 fixC SeD_A0084 - protein FixC 78 55.21 0 91561..91848 + 95 198246083 - SeD_A0085 - 4Fe-4S ferredoxin, iron-sulfur binding domain protein 79 54.09 0 91929..93335 + 468 198245456 - SeD_A0086 - putative metabolite transport protein YaaU 80 48.48 0 93424..93654 + 76 198245237 - SeD_A0087 - hypothetical protein 81 52.54 0 93754..94284 + 176 198244841 kefF SeD_A0088 - glutathione-regulated potassium-efflux system ancillary protein kefF 82 58.02 +1 94277..96139 + 620 198246065 - SeD_A0089 - glutathione-regulated potassium-efflux system protein KefC 83 40.48 -1 96136..96261 - 41 198245170 - SeD_A0090 - hypothetical protein 84 53.54 0 96338..96817 + 159 198242069 folA SeD_A0091 - dihydrofolate reductase 85 55.95 0 96923..97771 - 282 198242812 - SeD_A0092 - bis(5'-nucleosyl)-tetraphosphatase 86 54.50 0 97782..98159 - 125 198243323 apaG SeD_A0093 - protein ApaG 87 52.43 0 98162..98983 - 273 198244097 ksgA SeD_A0094 - dimethyladenosine transferase 88 58.89 +1 98980..99969 - 329 198244575 pdxA SeD_A0095 - 4-hydroxythreonine-4-phosphate dehydrogenase 89 54.31 0 99969..101255 - 428 198244102 surA SeD_A0096 - chaperone/peptidyl-prolyl cis-trans isomerase SurA 90 52.65 0 101309..103669 - 786 198242523 imp SeD_A0097 - LPS-assembly protein 91 47.53 0 103679..103840 - 53 198243047 - SeD_A0098 - hypothetical protein 92 54.00 0 103923..104735 + 270 198243576 - SeD_A0099 - DnaJ domain protein 93 57.42 0 104830..105489 - 219 198244685 - SeD_A0100 - pseudouridine synthase, RluA family 94 57.00 0 105501..108407 - 968 198245326 rapA SeD_A0101 - RNA polymerase associated protein RapA 95 56.76 0 108581..110932 - 783 198245956 - SeD_A0102 - DNA polymerase II 96 47.90 0 110976..111689 - 237 198242615 - SeD_A0103 - putative secreted protein 97 55.32 0 112539..113234 - 231 198242714 araD SeD_A0105 - L-ribulose-5-phosphate 4-epimerase 98 56.22 0 113375..114877 - 500 198243370 araA SeD_A0106 - L-arabinose isomerase 99 60.47 +1 114888..116597 - 569 198243987 araB SeD_A0107 - L-ribulokinase 100 54.02 0 116937..117782 + 281 198244573 - SeD_A0108 - arabinose operon regulatory protein 51.79 MEAN 6.18 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
version
1.0