IslandPath Analysis: Nitrobacter hamburgensis X14



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 62.04   STD DEV: 4.09
Nitrobacter hamburgensis X14, complete genome - 1..4406967
3804 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 65.97	0	107..1534	+	475	92115634	dnaA	Nham_0001	-	chromosomal replication initiation protein
2	 63.00	0	1738..2856	+	372	92115635	-	Nham_0002	-	DNA polymerase III subunit beta
3	 70.26	+2	3021..4160	+	379	92115636	recF	Nham_0003	-	recombination protein F
4	 64.46	0	4459..6900	+	813	92115637	gyrB	Nham_0004	-	DNA gyrase subunit B
5	 65.70	0	7095..8228	-	377	92115638	-	Nham_0005	-	hypothetical protein
6	 62.19	0	8563..9120	+	185	92115639	-	Nham_0006	-	hypothetical protein
7	 61.85	0	9150..9896	-	248	92115640	-	Nham_0007	-	hypothetical protein
8	 58.25	0	9957..10241	-	94	92115641	-	Nham_0008	-	hypothetical protein
9	 65.36	0	10492..11412	+	306	92115642	-	Nham_0009	-	Pirin-like
10	 64.67	0	11419..12420	-	333	92115643	-	Nham_0010	-	PfkB
11	 65.85	0	12511..14100	+	529	92115644	-	Nham_0011	-	integral membrane protein MviN
12	 61.11	0	14196..15239	+	347	92115645	-	Nham_0012	-	tryptophanyl-tRNA synthetase
13	 61.54	0	15511..15861	+	116	92115646	-	Nham_0013	-	ISGsu3, transposase
14	 64.74	0	15896..16621	+	241	92115647	-	Nham_0014	-	transposase, IS4
15	 65.25	0	16865..17359	+	164	92115648	-	Nham_0015	-	hypothetical protein
16	 61.46	0	17538..18113	+	191	92115649	-	Nham_0016	-	nitrogen-fixing NifU-like
17	 67.73	+1	18143..19273	-	376	92115650	-	Nham_0017	-	hypothetical protein
18	 71.39	+2	19577..20275	+	232	92115651	-	Nham_0018	-	peptidase M22, glycoprotease
19	 65.22	0	20272..20754	+	160	92115652	-	Nham_0019	-	ribosomal-protein-alanine acetyltransferase
20	 60.22	0	20911..21360	+	149	92115653	-	Nham_0020	-	ferric uptake regulator family protein
21	 65.47	0	21543..22964	+	473	92115654	-	Nham_0021	-	tRNA-i(6)A37 modification enzyme MiaB
22	 65.81	0	22969..24018	+	349	92115655	-	Nham_0022	-	PhoH-like protein
23	 63.87	0	24020..24592	+	190	92115656	-	Nham_0023	-	hypothetical protein
24	 68.36	+1	24593..25717	+	374	92115657	-	Nham_0024	-	CBS:transporter-associated
25	 65.31	0	25714..27339	+	541	92115658	lnt	Nham_0025	-	apolipoprotein N-acyltransferase
26	 64.76	0	27538..27957	+	139	92115659	-	Nham_0026	-	XRE family transcriptional regulator
27	 66.93	+1	27995..28762	+	255	92115660	trmB	Nham_0027	-	tRNA (guanine-N(7))-methyltransferase
28	 64.77	0	29091..29882	+	263	92115661	-	Nham_0028	-	hypothetical protein
29	 64.87	0	29886..31496	+	536	92115662	nusA	Nham_0029	-	transcription elongation factor NusA
30	 66.67	+1	31572..32237	+	221	92115663	-	Nham_0030	-	hypothetical protein
31	 66.97	+1	32305..34911	+	868	92115664	infB	Nham_0031	-	translation initiation factor IF-2
32	 60.63	0	35047..35460	+	137	92115665	rbfA	Nham_0032	-	ribosome-binding factor A
33	 65.05	0	35466..36704	+	412	92115666	truB	Nham_0033	-	tRNA pseudouridine synthase B
34	 55.93	-1	36707..36976	+	89	92115667	rpsO	Nham_0034	-	30S ribosomal protein S15
35	 64.89	0	37219..39465	+	748	92115668	-	Nham_0035	-	polynucleotide phosphorylase/polyadenylase
36	 68.43	+1	39679..40584	-	301	92115669	-	Nham_0036	-	LysR family transcriptional regulator
37	 64.61	0	40839..43028	+	729	92115670	-	Nham_0037	-	catalase/peroxidase HPI
38	 63.99	0	43662..44258	+	198	92115671	-	Nham_0039	-	glutathione S-transferase-like
39	 65.02	0	44413..45261	-	282	92115672	-	Nham_0040	-	enoyl-(acyl carrier protein) reductase
40	 63.07	0	45427..46650	-	407	92115673	-	Nham_0041	-	3-oxoacyl-(acyl carrier protein) synthase I
41	 62.67	0	46736..47260	-	174	92115674	-	Nham_0042	-	3-hydroxydecanoyl-(acyl carrier protein) dehydratase
42	 60.64	0	48031..48528	+	165	92115675	-	Nham_0043	-	ferric uptake regulator family protein
43	 64.16	0	48625..49182	-	185	92115676	-	Nham_0044	-	hypothetical protein
44	 65.87	0	49669..50670	+	333	92115677	-	Nham_0045	-	glycolate reductase
45	 65.29	0	50818..51618	-	266	92115678	-	Nham_0046	-	UBA/THIF-type NAD/FAD binding fold
46	 67.93	+1	51840..53186	+	448	92115679	-	Nham_0047	-	peptidoglycan binding domain-containing protein
47	 65.31	0	53229..54110	-	293	92115680	-	Nham_0048	-	formamidopyrimidine-DNA glycosylase
48	 64.04	0	54202..54963	+	253	92115681	ubiE	Nham_0049	-	ubiquinone/menaquinone biosynthesis methyltransferase
49	 67.12	+1	54972..56528	+	518	92115682	-	Nham_0050	-	2-polyprenylphenol 6-hydroxylase
50	 67.08	+1	56591..58030	+	479	92115683	-	Nham_0051	-	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase
51	 68.63	+1	58027..58485	+	152	92115684	-	Nham_0052	-	deoxyuridine 5'-triphosphate nucleotidohydrolase (dut)
52	 66.31	+1	58867..61383	+	838	92115685	-	Nham_0053	-	PAS/PAC sensor signal transduction histidine kinase
53	 67.19	+1	61380..62903	+	507	92115686	-	Nham_0054	-	hypothetical protein
54	 61.99	0	63003..63323	+	106	92115687	-	Nham_0055	-	hypothetical protein
55	 67.63	+1	63590..64312	+	240	92115688	-	Nham_0056	-	nucleotidyl transferase
56	 68.51	+1	64411..67560	+	1049	92115689	-	Nham_0057	-	hypothetical protein
57	 67.07	+1	67557..71045	+	1162	92115690	-	Nham_0058	-	UvrD/REP helicase
58	 62.93	0	71144..71464	+	106	92115691	-	Nham_0059	-	thioredoxin
59	 67.57	+1	71708..73036	-	442	92115692	-	Nham_0060	-	FolC bifunctional protein
60	 64.87	0	73033..73977	-	314	92115693	-	Nham_0061	-	acetyl-CoA carboxylase subunit beta
61	 66.79	+1	74164..75000	-	278	92115694	trpA	Nham_0062	-	tryptophan synthase subunit alpha
62	 64.66	0	74997..76241	-	414	92115695	-	Nham_0063	-	tryptophan synthase subunit beta
63	 67.26	+1	76389..77066	-	225	92115696	-	Nham_0064	-	N-(5'-phosphoribosyl)anthranilate isomerase
64	 65.23	0	77344..77691	-	115	92115697	-	Nham_0065	-	hypothetical protein
65	 59.80	0	77777..78082	-	101	92115698	ihfB	Nham_0066	-	integration host factor subunit beta
66	 64.21	0	78251..79228	-	325	92115699	-	Nham_0067	-	signal peptide peptidase SppA, 36K type
67	 67.07	+1	79411..80151	-	246	92115700	-	Nham_0068	-	CysZ-like protein
68	 67.27	+1	80250..80744	-	164	92115701	-	Nham_0069	-	hypothetical protein
69	 64.64	0	80741..81676	-	311	92115702	-	Nham_0070	-	hypothetical protein
70	 69.97	+1	81788..83302	+	504	92115703	-	Nham_0071	-	twin-arginine translocation pathway signal
71	 65.33	0	83299..83970	+	223	92115704	-	Nham_0072	-	protein of unknown function DUF71, ATP-binding region
72	 66.30	+1	84211..86664	-	817	92115705	pheT	Nham_0073	-	phenylalanyl-tRNA synthetase subunit beta
73	 63.23	0	86661..87767	-	368	92115706	pheS	Nham_0074	-	phenylalanyl-tRNA synthetase subunit alpha
74	 64.72	0	87949..88308	-	119	92115707	rplT	Nham_0075	-	50S ribosomal protein L20
75	 56.72	-1	88378..88578	-	66	92115708	rpmI	Nham_0076	-	50S ribosomal protein L35
76	 58.91	0	88906..89421	-	171	92115709	infC	Nham_0077	-	translation initiation factor IF-3
77	 70.03	+1	89676..90449	+	257	92115710	-	Nham_0078	-	hypothetical protein
78	 64.97	0	90511..92751	-	746	92115711	-	Nham_0079	-	hypothetical protein
79	 57.41	-1	93054..94781	-	575	92115712	-	Nham_0080	-	putative PAS/PAC sensor protein
80	 64.09	0	95549..96481	+	310	92115713	-	Nham_0081	-	thioredoxin-related
81	 62.37	0	96539..97213	+	224	92115714	-	Nham_0082	-	peptidase S16, lon-like
82	 61.11	0	97255..97452	+	65	92115715	-	Nham_0083	-	hypothetical protein
83	 67.11	+1	97735..99084	-	449	92115716	-	Nham_0084	-	ammonium transporter
84	 60.47	0	99122..99460	-	112	92115717	-	Nham_0085	-	nitrogen regulatory protein P-II (GlnB, GlnK)
85	 61.65	0	99872..100210	-	112	92115718	-	Nham_0086	-	nitrogen regulatory protein P-II (GlnB, GlnK)
86	 65.16	0	100358..101218	-	286	92115719	-	Nham_0087	-	acyl-CoA thioesterase II
87	 68.71	+1	101377..102597	+	406	92115720	-	Nham_0088	-	2-octaprenyl-6-methoxyphenyl hydroxylase
88	 67.30	+1	102806..104077	+	423	92115721	-	Nham_0089	-	aminotransferase, class I and II
89	 65.71	0	104090..106597	+	835	92115722	-	Nham_0090	-	cell divisionFtsK/SpoIIIE
90	 62.06	0	106840..107859	+	339	92115723	-	Nham_0091	-	outer membrane lipoprotein carrier protein LolA
91	 64.17	0	107936..108817	+	293	92115724	-	Nham_0092	-	exodeoxyribonuclease III (xth)
92	 67.11	+1	108887..109336	-	149	92115725	-	Nham_0093	-	cyclic nucleotide-binding domain-containing protein
93	 64.05	0	109421..110107	-	228	92115726	-	Nham_0094	-	two component transcriptional regulator
94	 67.60	+1	110256..110897	+	213	92115727	-	Nham_0095	-	hypothetical protein
95	 64.45	0	111017..111694	-	225	92115728	-	Nham_0096	-	hypothetical protein
96	 64.26	0	111728..112432	-	234	92115729	-	Nham_0097	-	glutathione S-transferase-like
97	 64.39	0	112586..115222	+	878	92115730	leuS	Nham_0098	-	leucyl-tRNA synthetase
98	 66.84	+1	115209..115793	+	194	92115731	-	Nham_0099	-	hypothetical protein
99	 67.54	+1	115805..116833	+	342	92115732	holA	Nham_0100	-	DNA polymerase III subunit delta
100	 49.31	-2	117041..117328	-	95	92115733	-	Nham_0101	-	excinuclease ABC subunit C
62.04	MEAN

4.09	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.