IslandPathversion 1.0

IslandPath Analysis: Syntrophobacter fumaroxidans MPOB



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 59.71 STD DEV: 3.83
Syntrophobacter fumaroxidans MPOB, complete genome - 1..4990251
4064 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 56.76	0	346..1698	+	450	116747453	-	Sfum_0001	-	chromosomal replication initiator protein DnaA
2	 51.39	-2	2035..2322	-	95	116747454	-	Sfum_0002	-	histone family protein DNA-binding protein
3	 50.78	-2	3108..3491	+	127	116747455	-	Sfum_0003	-	putative 6-pyruvoyl tetrahydropterin synthase
4	 57.40	0	3935..4657	+	240	116747456	-	Sfum_0004	-	hypothetical protein
5	 59.23	0	4738..6567	-	609	116747457	-	Sfum_0005	-	TPR repeat-containing protein
6	 63.04	0	6663..7736	-	357	116747458	-	Sfum_0006	-	KpsF/GutQ family protein
7	 59.56	0	7764..9227	-	487	116747459	-	Sfum_0007	-	amidophosphoribosyltransferase
8	 60.31	0	9364..12606	-	1080	116747460	carB	Sfum_0008	-	carbamoyl phosphate synthase large subunit
9	 59.86	0	13077..14252	-	391	116747461	-	Sfum_0009	-	carbamoyl phosphate synthase small subunit
10	 65.21	+1	14823..15575	-	250	116747462	-	Sfum_0010	-	3-deoxy-D-manno-octulosonate cytidylyltransferase
11	 63.79	+1	15808..18558	+	916	116747463	-	Sfum_0011	-	(glutamate--ammonia-ligase) adenylyltransferase
12	 63.83	+1	21465..23087	-	540	116747464	-	Sfum_0013	-	methyl-viologen-reducing hydrogenase, delta subunit
13	 66.28	+1	23084..26434	-	1116	116747465	-	Sfum_0014	-	4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
14	 62.48	0	26434..27054	-	206	116747466	-	Sfum_0015	-	2-oxoglutarate synthase
15	 63.70	+1	27086..27928	-	280	116747467	-	Sfum_0016	-	2-oxoglutarate ferredoxin oxidoreductase subunit beta
16	 63.99	+1	28280..29437	-	385	116747468	-	Sfum_0017	-	2-oxoglutarate ferredoxin oxidoreductase subunit alpha
17	 53.19	-1	29501..29782	-	93	116747469	-	Sfum_0018	-	4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
18	 58.79	0	30557..31330	-	257	116747470	-	Sfum_0019	-	hypothetical protein
19	 58.41	0	32284..34755	-	823	116747471	-	Sfum_0020	-	ATP-dependent protease, putative
20	 52.32	-1	34935..35171	-	78	116747472	-	Sfum_0021	-	hypothetical protein
21	 56.54	0	35199..35504	-	101	116747473	-	Sfum_0022	-	hypothetical protein
22	 59.95	0	35568..36401	-	277	116747474	-	Sfum_0023	-	xylose isomerase domain-containing protein
23	 60.92	0	37084..38022	+	312	116747475	-	Sfum_0024	-	periplasmic solute binding protein
24	 60.89	0	38113..38562	+	149	116747476	-	Sfum_0025	-	ferric uptake regulator family protein
25	 65.85	+1	38724..39092	-	122	116747477	-	Sfum_0026	-	hypothetical protein
26	 58.39	0	39107..39952	+	281	116747478	-	Sfum_0027	-	extracellular solute-binding protein
27	 63.64	+1	39986..40678	+	230	116747479	-	Sfum_0028	-	binding-protein-dependent transport systems inner membrane component
28	 64.06	+1	40678..41406	+	242	116747480	-	Sfum_0029	-	ABC transporter related
29	 58.52	0	42222..43301	+	359	116747481	-	Sfum_0030	-	molybdopterin oxidoreductase Fe4S4 region
30	 62.00	0	43350..44936	+	528	116747482	-	Sfum_0031	-	molybdopterin oxidoreductase
31	 63.06	0	45717..47351	+	544	116747483	-	Sfum_0032	-	molybdopterin binding domain-containing protein
32	 57.69	0	47379..47846	+	155	116747484	-	Sfum_0033	-	ModE family transcriptional regulator
33	 60.20	0	47918..48721	+	267	116747485	-	Sfum_0034	-	formate dehydrogenase family accessory protein FdhD
34	 57.31	0	49011..49598	+	195	116747486	-	Sfum_0035	-	formate dehydrogenase
35	 58.26	0	49647..52061	+	804	116747487	-	Sfum_0036	-	formate dehydrogenase, alpha subunit
36	 58.87	0	52074..52727	+	217	116747488	-	Sfum_0037	-	formate dehydrogenase, beta subunit, putative
37	 61.42	0	52769..53779	+	336	116747489	-	Sfum_0038	-	protein involved in formate dehydrogenase formation
38	 58.48	0	53803..54669	-	288	116747490	-	Sfum_0039	-	ABC transporter, periplasmic substrate-binding protein, putative
39	 53.15	-1	55042..55374	+	110	116747491	-	Sfum_0040	-	hypothetical protein
40	 65.25	+1	55576..56631	-	351	116747492	-	Sfum_0041	-	chorismate synthase
41	 52.26	-1	56834..57076	+	80	116747493	-	Sfum_0042	-	ATP-dependent Clp protease adaptor protein ClpS
42	 60.75	0	57077..59407	+	776	116747494	-	Sfum_0043	-	ATP-dependent Clp protease, ATP-binding subunit clpA
43	 60.85	0	59426..60130	+	234	116747495	aat	Sfum_0044	-	leucyl/phenylalanyl-tRNA--protein transferase
44	 58.76	0	60382..60672	-	96	116747496	-	Sfum_0045	-	hypothetical protein
45	 59.67	0	61277..62605	+	442	116747497	-	Sfum_0046	-	hypothetical protein
46	 62.29	0	62717..63652	+	311	116747498	-	Sfum_0047	-	carbamate kinase
47	 62.48	0	63699..64796	-	365	116747499	-	Sfum_0048	-	hypothetical protein
48	 55.50	-1	64811..65401	-	196	116747500	-	Sfum_0049	-	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase
49	 55.82	-1	66160..66795	-	211	116747501	-	Sfum_0050	-	lytic transglycosylase, catalytic
50	 55.56	-1	66965..67630	-	221	116747502	-	Sfum_0051	-	putative transaldolase
51	 52.71	-1	67652..67909	-	85	116747503	-	Sfum_0052	-	TRASH domain-containing protein
52	 61.21	0	67923..68417	-	164	116747504	-	Sfum_0053	-	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
53	 60.07	0	68460..69626	-	388	116747505	-	Sfum_0054	-	aminotransferase, class I and II
54	 62.69	0	69890..70693	-	267	116747506	-	Sfum_0055	-	dihydrodipicolinate reductase
55	 59.25	0	70727..71602	-	291	116747507	-	Sfum_0056	-	dihydrodipicolinate synthase
56	 60.76	0	71613..72476	-	287	116747508	dapF	Sfum_0057	-	diaminopimelate epimerase
57	 58.70	0	72652..73956	-	434	116747509	-	Sfum_0058	-	diaminopimelate decarboxylase
58	 57.97	0	74133..75224	-	363	116747510	-	Sfum_0059	-	fibronectin, type III domain-containing protein
59	 58.60	0	75248..76648	-	466	116747511	-	Sfum_0060	-	argininosuccinate lyase
60	 59.70	0	76678..77883	-	401	116747512	-	Sfum_0061	-	argininosuccinate synthase
61	 61.98	0	77970..78908	-	312	116747513	-	Sfum_0062	-	ornithine carbamoyltransferase
62	 60.12	0	78905..80095	-	396	116747514	-	Sfum_0063	-	acetylornithine and succinylornithine aminotransferases
63	 60.54	0	80165..81061	-	298	116747515	-	Sfum_0064	-	acetylglutamate kinase
64	 59.60	0	81161..82561	-	466	116747516	hslU	Sfum_0065	-	ATP-dependent protease ATP-binding subunit
65	 62.41	0	82567..83106	-	179	116747517	-	Sfum_0066	-	ATP-dependent protease peptidase subunit
66	 63.73	+1	83198..84184	-	328	116747518	-	Sfum_0067	-	phage integrase family protein
67	 58.00	0	84698..86773	+	691	116747519	-	Sfum_0068	-	elongation factor G
68	 59.68	0	86914..88029	+	371	116747520	-	Sfum_0069	-	hypothetical protein
69	 64.26	+1	88040..88579	+	179	116747521	-	Sfum_0070	-	molybdenum cofactor synthesis domain-containing protein
70	 53.79	-1	88847..89242	-	131	116747522	-	Sfum_0071	-	hypothetical protein
71	 60.17	0	89274..89750	-	158	116747523	-	Sfum_0072	-	hypothetical protein
72	 59.80	0	89747..90532	-	261	116747524	-	Sfum_0073	-	hypothetical protein
73	 57.28	0	90604..92307	-	567	116747525	-	Sfum_0074	-	TPR repeat-containing protein
74	 61.53	0	92497..93741	+	414	116747526	-	Sfum_0075	-	hypothetical protein
75	 63.65	+1	93794..94720	-	308	116747527	-	Sfum_0076	-	tRNA synthetase, class II (D, K and N)
76	 57.24	0	94725..95297	-	190	116747528	-	Sfum_0077	-	translation elongation factor P
77	 61.20	0	95481..96761	+	426	116747529	-	Sfum_0078	-	phosphopyruvate hydratase
78	 62.58	0	97253..98035	+	260	116747530	-	Sfum_0079	-	hypothetical protein
79	 62.89	0	98054..99481	+	475	116747531	-	Sfum_0080	-	iron-sulfur cluster binding protein
80	 60.61	0	99875..100303	+	142	116747532	-	Sfum_0081	-	hypothetical protein
81	 61.30	0	100272..100793	-	173	116747533	-	Sfum_0082	-	hypothetical protein
82	 61.32	0	100769..101329	-	186	116747534	-	Sfum_0083	-	hypothetical protein
83	 62.60	0	101883..102251	+	122	116747535	-	Sfum_0084	-	RNP-1 like RNA-binding protein
84	 58.63	0	103403..103651	-	82	116747536	-	Sfum_0085	-	hypothetical protein
85	 61.93	0	104087..105943	+	618	116747537	-	Sfum_0086	-	ABC transporter related
86	 61.07	0	106093..107361	+	422	116747538	-	Sfum_0087	-	hypothetical protein
87	 62.86	0	107499..109076	-	525	116747539	-	Sfum_0088	-	hypothetical protein
88	 55.10	-1	109721..110014	-	97	116747540	-	Sfum_0089	-	hypothetical protein
89	 58.50	0	110252..111904	+	550	116747541	-	Sfum_0090	-	cytochrome c family protein
90	 56.35	0	111908..112576	+	222	116747542	-	Sfum_0091	-	cytochrome B561
91	 60.14	0	112749..114035	-	428	116747543	-	Sfum_0092	-	chromate transporter
92	 61.06	0	114050..114370	-	106	116747544	-	Sfum_0093	-	rhodanese domain-containing protein
93	 60.70	0	114367..115656	-	429	116747545	-	Sfum_0094	-	major facilitator transporter
94	 59.94	0	115679..116020	-	113	116747546	-	Sfum_0095	-	hypothetical protein
95	 59.24	0	116446..116916	+	156	116747547	-	Sfum_0096	-	hypothetical protein
96	 56.67	0	116913..117332	+	139	116747548	-	Sfum_0097	-	hypothetical protein
97	 58.42	0	118044..120491	-	815	116747549	-	Sfum_0098	-	ATP-dependent protease La
98	 57.74	0	120691..121944	-	417	116747550	clpX	Sfum_0099	-	ATP-dependent protease ATP-binding subunit
99	 58.29	0	122508..123116	-	202	116747551	-	Sfum_0100	-	ATP-dependent Clp protease, proteolytic subunit ClpP
100	 57.49	0	123131..124438	-	435	116747552	-	Sfum_0101	-	trigger factor
59.71	MEAN

3.83	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.