version 1.0
Syntrophobacter fumaroxidans MPOB, complete genome - 1..4990251 4064 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 1 56.76 0 346..1698 + 450 116747453 - Sfum_0001 - chromosomal replication initiator protein DnaA 2 51.39 -2 2035..2322 - 95 116747454 - Sfum_0002 - histone family protein DNA-binding protein 3 50.78 -2 3108..3491 + 127 116747455 - Sfum_0003 - putative 6-pyruvoyl tetrahydropterin synthase 4 57.40 0 3935..4657 + 240 116747456 - Sfum_0004 - hypothetical protein 5 59.23 0 4738..6567 - 609 116747457 - Sfum_0005 - TPR repeat-containing protein 6 63.04 0 6663..7736 - 357 116747458 - Sfum_0006 - KpsF/GutQ family protein 7 59.56 0 7764..9227 - 487 116747459 - Sfum_0007 - amidophosphoribosyltransferase 8 60.31 0 9364..12606 - 1080 116747460 carB Sfum_0008 - carbamoyl phosphate synthase large subunit 9 59.86 0 13077..14252 - 391 116747461 - Sfum_0009 - carbamoyl phosphate synthase small subunit 10 65.21 +1 14823..15575 - 250 116747462 - Sfum_0010 - 3-deoxy-D-manno-octulosonate cytidylyltransferase 11 63.79 +1 15808..18558 + 916 116747463 - Sfum_0011 - (glutamate--ammonia-ligase) adenylyltransferase 12 63.83 +1 21465..23087 - 540 116747464 - Sfum_0013 - methyl-viologen-reducing hydrogenase, delta subunit 13 66.28 +1 23084..26434 - 1116 116747465 - Sfum_0014 - 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein 14 62.48 0 26434..27054 - 206 116747466 - Sfum_0015 - 2-oxoglutarate synthase 15 63.70 +1 27086..27928 - 280 116747467 - Sfum_0016 - 2-oxoglutarate ferredoxin oxidoreductase subunit beta 16 63.99 +1 28280..29437 - 385 116747468 - Sfum_0017 - 2-oxoglutarate ferredoxin oxidoreductase subunit alpha 17 53.19 -1 29501..29782 - 93 116747469 - Sfum_0018 - 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein 18 58.79 0 30557..31330 - 257 116747470 - Sfum_0019 - hypothetical protein 19 58.41 0 32284..34755 - 823 116747471 - Sfum_0020 - ATP-dependent protease, putative 20 52.32 -1 34935..35171 - 78 116747472 - Sfum_0021 - hypothetical protein 21 56.54 0 35199..35504 - 101 116747473 - Sfum_0022 - hypothetical protein 22 59.95 0 35568..36401 - 277 116747474 - Sfum_0023 - xylose isomerase domain-containing protein 23 60.92 0 37084..38022 + 312 116747475 - Sfum_0024 - periplasmic solute binding protein 24 60.89 0 38113..38562 + 149 116747476 - Sfum_0025 - ferric uptake regulator family protein 25 65.85 +1 38724..39092 - 122 116747477 - Sfum_0026 - hypothetical protein 26 58.39 0 39107..39952 + 281 116747478 - Sfum_0027 - extracellular solute-binding protein 27 63.64 +1 39986..40678 + 230 116747479 - Sfum_0028 - binding-protein-dependent transport systems inner membrane component 28 64.06 +1 40678..41406 + 242 116747480 - Sfum_0029 - ABC transporter related 29 58.52 0 42222..43301 + 359 116747481 - Sfum_0030 - molybdopterin oxidoreductase Fe4S4 region 30 62.00 0 43350..44936 + 528 116747482 - Sfum_0031 - molybdopterin oxidoreductase 31 63.06 0 45717..47351 + 544 116747483 - Sfum_0032 - molybdopterin binding domain-containing protein 32 57.69 0 47379..47846 + 155 116747484 - Sfum_0033 - ModE family transcriptional regulator 33 60.20 0 47918..48721 + 267 116747485 - Sfum_0034 - formate dehydrogenase family accessory protein FdhD 34 57.31 0 49011..49598 + 195 116747486 - Sfum_0035 - formate dehydrogenase 35 58.26 0 49647..52061 + 804 116747487 - Sfum_0036 - formate dehydrogenase, alpha subunit 36 58.87 0 52074..52727 + 217 116747488 - Sfum_0037 - formate dehydrogenase, beta subunit, putative 37 61.42 0 52769..53779 + 336 116747489 - Sfum_0038 - protein involved in formate dehydrogenase formation 38 58.48 0 53803..54669 - 288 116747490 - Sfum_0039 - ABC transporter, periplasmic substrate-binding protein, putative 39 53.15 -1 55042..55374 + 110 116747491 - Sfum_0040 - hypothetical protein 40 65.25 +1 55576..56631 - 351 116747492 - Sfum_0041 - chorismate synthase 41 52.26 -1 56834..57076 + 80 116747493 - Sfum_0042 - ATP-dependent Clp protease adaptor protein ClpS 42 60.75 0 57077..59407 + 776 116747494 - Sfum_0043 - ATP-dependent Clp protease, ATP-binding subunit clpA 43 60.85 0 59426..60130 + 234 116747495 aat Sfum_0044 - leucyl/phenylalanyl-tRNA--protein transferase 44 58.76 0 60382..60672 - 96 116747496 - Sfum_0045 - hypothetical protein 45 59.67 0 61277..62605 + 442 116747497 - Sfum_0046 - hypothetical protein 46 62.29 0 62717..63652 + 311 116747498 - Sfum_0047 - carbamate kinase 47 62.48 0 63699..64796 - 365 116747499 - Sfum_0048 - hypothetical protein 48 55.50 -1 64811..65401 - 196 116747500 - Sfum_0049 - CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase 49 55.82 -1 66160..66795 - 211 116747501 - Sfum_0050 - lytic transglycosylase, catalytic 50 55.56 -1 66965..67630 - 221 116747502 - Sfum_0051 - putative transaldolase 51 52.71 -1 67652..67909 - 85 116747503 - Sfum_0052 - TRASH domain-containing protein 52 61.21 0 67923..68417 - 164 116747504 - Sfum_0053 - 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase 53 60.07 0 68460..69626 - 388 116747505 - Sfum_0054 - aminotransferase, class I and II 54 62.69 0 69890..70693 - 267 116747506 - Sfum_0055 - dihydrodipicolinate reductase 55 59.25 0 70727..71602 - 291 116747507 - Sfum_0056 - dihydrodipicolinate synthase 56 60.76 0 71613..72476 - 287 116747508 dapF Sfum_0057 - diaminopimelate epimerase 57 58.70 0 72652..73956 - 434 116747509 - Sfum_0058 - diaminopimelate decarboxylase 58 57.97 0 74133..75224 - 363 116747510 - Sfum_0059 - fibronectin, type III domain-containing protein 59 58.60 0 75248..76648 - 466 116747511 - Sfum_0060 - argininosuccinate lyase 60 59.70 0 76678..77883 - 401 116747512 - Sfum_0061 - argininosuccinate synthase 61 61.98 0 77970..78908 - 312 116747513 - Sfum_0062 - ornithine carbamoyltransferase 62 60.12 0 78905..80095 - 396 116747514 - Sfum_0063 - acetylornithine and succinylornithine aminotransferases 63 60.54 0 80165..81061 - 298 116747515 - Sfum_0064 - acetylglutamate kinase 64 59.60 0 81161..82561 - 466 116747516 hslU Sfum_0065 - ATP-dependent protease ATP-binding subunit 65 62.41 0 82567..83106 - 179 116747517 - Sfum_0066 - ATP-dependent protease peptidase subunit 66 63.73 +1 83198..84184 - 328 116747518 - Sfum_0067 - phage integrase family protein 67 58.00 0 84698..86773 + 691 116747519 - Sfum_0068 - elongation factor G 68 59.68 0 86914..88029 + 371 116747520 - Sfum_0069 - hypothetical protein 69 64.26 +1 88040..88579 + 179 116747521 - Sfum_0070 - molybdenum cofactor synthesis domain-containing protein 70 53.79 -1 88847..89242 - 131 116747522 - Sfum_0071 - hypothetical protein 71 60.17 0 89274..89750 - 158 116747523 - Sfum_0072 - hypothetical protein 72 59.80 0 89747..90532 - 261 116747524 - Sfum_0073 - hypothetical protein 73 57.28 0 90604..92307 - 567 116747525 - Sfum_0074 - TPR repeat-containing protein 74 61.53 0 92497..93741 + 414 116747526 - Sfum_0075 - hypothetical protein 75 63.65 +1 93794..94720 - 308 116747527 - Sfum_0076 - tRNA synthetase, class II (D, K and N) 76 57.24 0 94725..95297 - 190 116747528 - Sfum_0077 - translation elongation factor P 77 61.20 0 95481..96761 + 426 116747529 - Sfum_0078 - phosphopyruvate hydratase 78 62.58 0 97253..98035 + 260 116747530 - Sfum_0079 - hypothetical protein 79 62.89 0 98054..99481 + 475 116747531 - Sfum_0080 - iron-sulfur cluster binding protein 80 60.61 0 99875..100303 + 142 116747532 - Sfum_0081 - hypothetical protein 81 61.30 0 100272..100793 - 173 116747533 - Sfum_0082 - hypothetical protein 82 61.32 0 100769..101329 - 186 116747534 - Sfum_0083 - hypothetical protein 83 62.60 0 101883..102251 + 122 116747535 - Sfum_0084 - RNP-1 like RNA-binding protein 84 58.63 0 103403..103651 - 82 116747536 - Sfum_0085 - hypothetical protein 85 61.93 0 104087..105943 + 618 116747537 - Sfum_0086 - ABC transporter related 86 61.07 0 106093..107361 + 422 116747538 - Sfum_0087 - hypothetical protein 87 62.86 0 107499..109076 - 525 116747539 - Sfum_0088 - hypothetical protein 88 55.10 -1 109721..110014 - 97 116747540 - Sfum_0089 - hypothetical protein 89 58.50 0 110252..111904 + 550 116747541 - Sfum_0090 - cytochrome c family protein 90 56.35 0 111908..112576 + 222 116747542 - Sfum_0091 - cytochrome B561 91 60.14 0 112749..114035 - 428 116747543 - Sfum_0092 - chromate transporter 92 61.06 0 114050..114370 - 106 116747544 - Sfum_0093 - rhodanese domain-containing protein 93 60.70 0 114367..115656 - 429 116747545 - Sfum_0094 - major facilitator transporter 94 59.94 0 115679..116020 - 113 116747546 - Sfum_0095 - hypothetical protein 95 59.24 0 116446..116916 + 156 116747547 - Sfum_0096 - hypothetical protein 96 56.67 0 116913..117332 + 139 116747548 - Sfum_0097 - hypothetical protein 97 58.42 0 118044..120491 - 815 116747549 - Sfum_0098 - ATP-dependent protease La 98 57.74 0 120691..121944 - 417 116747550 clpX Sfum_0099 - ATP-dependent protease ATP-binding subunit 99 58.29 0 122508..123116 - 202 116747551 - Sfum_0100 - ATP-dependent Clp protease, proteolytic subunit ClpP 100 57.49 0 123131..124438 - 435 116747552 - Sfum_0101 - trigger factor 59.71 MEAN 3.83 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
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