IslandPath Analysis: Sulfurovum sp. NBC37-1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 44.05   STD DEV: 5.28
Sulfurovum sp. NBC37-1, complete genome - 1..2562277
2438 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 41.99	0	65..1393	+	442	152991598	dnaA	SUN_0001	-	chromosomal replication initiation protein
2	 37.92	-1	1584..2651	+	355	152991599	dnaN	SUN_0002	-	DNA polymerase III subunit beta
3	 47.49	0	2663..4294	+	543	152991600	pyrG	SUN_0003	-	CTP synthetase
4	 50.19	+1	4295..5878	+	527	152991601	recJ	SUN_0004	-	single-strand DNA-specific exonuclease
5	 42.03	0	5881..6087	+	68	152991602	-	SUN_0005	-	hypothetical protein
6	 48.72	0	6135..7109	-	324	152991603	-	SUN_0006	-	hypothetical protein
7	 48.63	0	7187..8389	-	400	152991604	iscS	SUN_0007	-	cysteine desulfurase
8	 42.12	0	8705..9091	+	128	152991605	-	SUN_0008	-	hypothetical protein
9	 51.64	+1	9093..9671	-	192	152991606	-	SUN_0009	-	GTP cyclohydrolase I
10	 47.09	0	9713..10693	-	326	152991607	-	SUN_0010	-	A/G-specific adenine glycosylase
11	 45.87	0	10775..12058	+	427	152991608	tig	SUN_0011	-	trigger factor
12	 48.30	0	12345..12932	+	195	152991609	clpP	SUN_0012	-	ATP-dependent Clp protease proteolytic subunit
13	 44.38	0	12941..13465	+	174	152991610	-	SUN_0013	-	peptide deformylase
14	 46.53	0	13548..15131	+	527	152991611	-	SUN_0014	-	Mg chelatase-related protein
15	 50.75	+1	15241..16308	-	355	152991612	-	SUN_0015	-	hypothetical protein
16	 43.82	0	16431..17336	+	301	152991613	-	SUN_0016	-	LysR family transcriptional regulator
17	 42.33	0	17337..17903	-	188	152991614	-	SUN_0017	-	molybdopterin-guanine dinucleotide biosynthesis protein A
18	 47.77	0	17900..19021	-	373	152991615	-	SUN_0018	-	nucleoside:H+ symporter
19	 46.39	0	19018..19515	-	165	152991616	-	SUN_0019	-	hypothetical protein
20	 47.89	0	19515..20297	-	260	152991617	-	SUN_0020	-	hypothetical protein
21	 46.50	0	20334..21548	-	404	152991618	-	SUN_0021	-	type II secretion system protein F
22	 45.22	0	21668..22096	-	142	152991619	-	SUN_0022	-	hypothetical protein
23	 47.33	0	22093..22635	-	180	152991620	-	SUN_0023	-	hypothetical protein
24	 48.87	0	22644..23087	-	147	152991621	-	SUN_0024	-	type II secretion system protein G
25	 44.92	0	23148..24062	+	304	152991622	-	SUN_0025	-	hypothetical protein
26	 47.59	0	24040..24972	+	310	152991623	-	SUN_0026	-	hypothetical protein
27	 43.78	0	24969..25370	+	133	152991624	-	SUN_0027	-	hypothetical protein
28	 46.12	0	25358..25873	+	171	152991625	-	SUN_0028	-	hypothetical protein
29	 46.50	0	25857..26699	+	280	152991626	-	SUN_0029	-	hypothetical protein
30	 47.91	0	26686..28722	+	678	152991627	-	SUN_0030	-	type II secretion system protein D
31	 48.81	0	28722..30233	+	503	152991628	-	SUN_0031	-	type II secretion system protein E
32	 45.02	0	30211..30852	+	213	152991629	-	SUN_0032	-	hypothetical protein
33	 47.04	0	30907..33240	+	777	152991630	-	SUN_0033	-	hypothetical protein
34	 45.88	0	33313..33822	+	169	152991631	-	SUN_0034	-	hypothetical protein
35	 49.01	0	33843..34448	-	201	152991632	-	SUN_0035	-	orotate phosphoribosyltransferase
36	 43.37	0	34451..35008	-	185	152991633	frr	SUN_0036	-	ribosome recycling factor
37	 45.11	0	35140..35487	-	115	152991634	-	SUN_0037	-	preprotein translocase subunit G
38	 41.70	0	35597..36325	+	242	152991635	-	SUN_0038	-	methyl transferase
39	 46.87	0	36364..37050	-	228	152991636	-	SUN_0039	-	hypothetical protein
40	 36.46	-1	46040..46231	+	63	152991637	rpmI	SUN_0041	-	50S ribosomal protein L35
41	 39.78	0	46342..46698	+	118	152991638	rplT	SUN_0042	-	50S ribosomal protein L20
42	 47.92	0	46898..48001	+	367	152991639	-	SUN_0043	-	deoxyguanosinetriphosphate triphosphohydrolase
43	 43.25	0	48234..49766	+	510	152991640	-	SUN_0044	-	hypothetical protein
44	 43.49	0	50045..50635	+	196	152991641	-	SUN_0045	-	hypothetical protein
45	 44.09	0	50831..51202	+	123	152991642	-	SUN_0046	-	hypothetical protein
46	 44.44	0	51212..52687	+	491	152991643	-	SUN_0047	-	hypothetical protein
47	 36.43	-1	52711..53130	+	139	152991644	-	SUN_0048	-	hypothetical protein
48	 45.86	0	53157..54473	+	438	152991645	-	SUN_0049	-	sulfur oxidation protein SoxC
49	 45.35	0	54454..55626	+	390	152991646	-	SUN_0050	-	sulfur oxidation protein, cytochrome c subunit
50	 40.94	0	55666..56178	+	170	152991647	-	SUN_0051	-	sulfur oxidation protein SoxY
51	 33.66	-1	56258..56560	+	100	152991648	-	SUN_0052	-	sulfur oxidation protein SoxZ
52	 43.32	0	56570..57691	+	373	152991649	-	SUN_0053	-	hypothetical protein
53	 35.60	-1	57697..58137	+	146	152991650	-	SUN_0054	-	hypothetical protein
54	 43.40	0	58137..58583	+	148	152991651	-	SUN_0055	-	hypothetical protein
55	 39.81	0	58672..59427	+	251	152991652	-	SUN_0056	-	hypothetical protein
56	 41.93	0	59564..60505	+	313	152991653	-	SUN_0057	-	hypothetical protein
57	 41.30	0	60805..62172	-	455	152991654	-	SUN_0058	-	sulfur oxidation protein, flavocytochrome c
58	 44.23	0	62240..62707	-	155	152991655	-	SUN_0059	-	hypothetical protein
59	 41.01	0	62708..63124	-	138	152991656	-	SUN_0060	-	hypothetical protein
60	 37.53	-1	63286..64023	+	245	152991657	-	SUN_0061	-	hypothetical protein
61	 44.65	0	64025..65005	+	326	152991658	-	SUN_0062	-	hypothetical protein
62	 49.72	+1	65047..66114	-	355	152991659	prfA	SUN_0063	-	peptide chain release factor 1
63	 42.96	0	66192..66461	-	89	152991660	rpsT	SUN_0064	-	30S ribosomal protein S20
64	 47.46	0	66689..68026	+	445	152991661	glmM	SUN_0065	-	phosphoglucosamine mutase
65	 47.17	0	68026..68466	+	146	152991662	-	SUN_0066	-	lipoprotein signal peptidase
66	 45.95	0	68473..69423	+	316	152991663	-	SUN_0067	-	hypothetical protein
67	 43.47	0	69420..70238	+	272	152991664	-	SUN_0068	-	hypothetical protein
68	 43.70	0	70235..70504	-	89	152991665	-	SUN_0069	-	hypothetical protein
69	 49.16	0	70572..71045	-	157	152991666	moaC	SUN_0070	-	molybdenum cofactor biosynthesis protein C
70	 43.52	0	71236..71922	+	228	152991667	-	SUN_0071	-	hypothetical protein
71	 44.38	0	71922..73388	+	488	152991668	-	SUN_0072	-	ferredoxin-like protein
72	 47.14	0	73399..74571	+	390	152991669	-	SUN_0073	-	sulfide-quinone reductase
73	 39.10	0	74628..75026	+	132	152991670	-	SUN_0074	-	hypothetical protein
74	 45.21	0	75195..75716	+	173	152991671	tpx	SUN_0075	-	thiol peroxidase
75	 43.67	0	75744..76391	+	215	152991672	-	SUN_0076	-	hypothetical protein
76	 35.92	-1	76411..76797	+	128	152991673	-	SUN_0077	-	hypothetical protein
77	 45.85	0	76799..77389	+	196	152991674	-	SUN_0078	-	hypothetical protein
78	 43.57	0	77476..77973	+	165	152991675	-	SUN_0079	-	hypothetical protein
79	 44.02	0	77975..78751	-	258	152991676	-	SUN_0080	-	UDP-N-acetylenolpyruvoylglucosamine reductase
80	 45.79	0	78788..79654	-	288	152991677	-	SUN_0081	-	hypothetical protein
81	 49.71	+1	79932..80975	+	347	152991678	recA	SUN_0082	-	recombinase A
82	 46.67	0	81163..82437	+	424	152991679	-	SUN_0083	-	phosphopyruvate hydratase
83	 42.86	0	82446..82697	+	83	152991680	-	SUN_0084	-	hypothetical protein
84	 44.44	0	82701..83411	+	236	152991681	-	SUN_0085	-	hypothetical protein
85	 44.94	0	83408..84562	-	384	152991682	-	SUN_0086	-	NhaA family Na(+)/H(+) antiporter
86	 48.37	0	84549..85466	-	305	152991683	bioB	SUN_0087	-	biotin synthase
87	 45.88	0	85411..87609	-	732	152991684	topA	SUN_0088	-	DNA topoisomerase I
88	 45.92	0	87723..88628	-	301	152991685	-	SUN_0089	-	hypothetical protein
89	 47.80	0	88640..89206	-	188	152991686	dcd	SUN_0090	-	deoxycytidine triphosphate deaminase
90	 45.74	0	89224..90045	-	273	152991687	-	SUN_0091	-	hypothetical protein
91	 51.26	+1	90194..92569	+	791	152991688	-	SUN_0092	-	hypothetical protein
92	 39.56	0	92566..93528	+	320	152991689	-	SUN_0093	-	oxidoreductase
93	 44.56	0	93528..94097	+	189	152991690	-	SUN_0094	-	acetyltransferase
94	 38.86	0	94094..95179	+	361	152991691	-	SUN_0095	-	aminotransferase
95	 33.33	-2	95176..96441	+	421	152991692	-	SUN_0096	-	polysaccharide biosynthesis protein
96	 30.43	-2	96431..97153	+	240	152991693	-	SUN_0097	-	hypothetical protein
97	 30.38	-2	97146..98399	+	417	152991694	-	SUN_0098	-	polysaccharide biosynthesis protein
98	 29.84	-2	98443..99531	+	362	152991695	-	SUN_0099	-	hypothetical protein
99	 31.51	-2	99528..100625	+	365	152991696	-	SUN_0100	-	glycosyl transferase
100	 34.85	-1	100622..101017	+	131	152991697	-	SUN_0101	-	hypothetical protein
44.05	MEAN

5.28	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.