version 1.0
Methylibium petroleiphilum PM1, complete genome - 1..4044195 3819 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 1 66.52 0 186..1589 + 467 124265194 - Mpe_A0001 - chromosomal replication initiator protein DnaA 2 63.96 -1 1824..2930 + 368 124265195 - Mpe_A0002 - DNA polymerase III, beta subunit 3 66.04 0 3028..5583 + 851 124265196 - Mpe_A0003 - DNA gyrase subunit B 4 68.55 0 5597..5914 + 105 124265197 - Mpe_A0004 - hypothetical protein 5 67.36 0 5980..7566 + 528 124265198 - Mpe_A0005 - type I restriction-modification system, M subunit 6 61.99 -1 7643..8881 + 412 124265199 - Mpe_A0006 - restriction modification system, type I 7 62.22 -1 8934..10169 + 411 124265200 - Mpe_A0007 - ATPase 8 63.00 -1 10201..10773 + 190 124265201 - Mpe_A0008 - hypothetical protein 9 54.58 -2 10870..11109 - 79 124265202 - Mpe_A0009 - hypothetical protein 10 70.14 0 11121..12272 + 383 124265203 - Mpe_A0010 - hypothetical protein 11 65.69 0 12269..15454 + 1061 124265204 - Mpe_A0011 - type I site-specific deoxyribonuclease 12 74.78 +1 15560..17260 + 566 124265205 - Mpe_A0012 - cyclic nucleotide-regulated FAD-dependent pyridine nucleotide-disulphide oxidoreductase 13 68.63 0 17363..17515 + 50 124265206 - Mpe_A0013 - hypothetical protein 14 73.19 +1 17722..18150 + 142 124265207 - Mpe_A0014 - hypothetical protein 15 73.03 +1 18282..18611 + 109 124265208 - Mpe_A0015 - putative transmembrane protein 16 74.50 +1 18623..20065 - 480 124265209 - Mpe_A0016 - coenzyme F390 synthetase-like protein 17 72.60 0 20193..21035 + 280 124265210 - Mpe_A0017 - hypothetical protein 18 70.93 0 21070..21867 + 265 124265211 - Mpe_A0018 - formate/nitrate transporter 19 75.06 +1 21840..23126 - 428 124265212 - Mpe_A0019 - putative RNA polymerase sigma factor 20 67.63 0 23141..23554 - 137 124265213 - Mpe_A0020 - hypothetical protein 21 72.71 0 23594..24007 - 137 124265214 - Mpe_A0021 - hypothetical protein 22 71.07 0 24138..24500 - 120 124265215 - Mpe_A0022 - hypothetical protein 23 73.51 +1 24591..26576 - 661 124265216 - Mpe_A0023 - putative cysteine desulfurase 24 67.63 0 26589..27518 - 309 124265217 - Mpe_A0024 - hypothetical protein 25 72.36 0 27645..27890 - 81 124265218 - Mpe_A0025 - putative DNA-binding protein 26 72.24 0 27887..28855 - 322 124265219 - Mpe_A0026 - Serine O-acetyltransferase 27 72.65 0 28840..29307 - 155 124265220 - Mpe_A0027 - hypothetical protein 28 69.28 0 29475..30776 - 433 124265221 - Mpe_A0028 - O-acetylhomoserine aminocarboxypropyltransferase 29 68.79 0 30888..31310 - 140 124265222 - Mpe_A0029 - PhnB protein 30 67.07 0 31397..31645 - 82 124265223 - Mpe_A0030 - hypothetical protein 31 76.97 +2 31703..32032 - 109 124265224 - Mpe_A0031 - hypothetical protein 32 70.89 0 32643..34133 - 496 124265225 - Mpe_A0032 - hypothetical protein 33 71.93 0 34230..34457 + 75 124265226 - Mpe_A0033 - hypothetical protein 34 76.62 +1 34465..35067 - 200 124265227 - Mpe_A0034 - hypothetical protein 35 74.88 +1 35375..35995 + 206 124265228 - Mpe_A0035 - TetR family transcriptional regulator 36 72.39 0 36088..36786 + 232 124265229 - Mpe_A0036 - putative short chain dehydrogenase 37 74.41 +1 36822..37454 - 210 124265230 - Mpe_A0037 - hypothetical protein 38 72.31 0 37634..38236 + 200 124265231 - Mpe_A0038 - putative paraquat-inducible protein 39 70.74 0 38347..39009 + 220 124265232 - Mpe_A0039 - putative paraquat-inducible protein 40 70.29 0 38997..40706 + 569 124265233 - Mpe_A0040 - paraquat-inducible protein 41 76.81 +1 40703..41323 + 206 124265234 - Mpe_A0041 - putative lipoprotein 42 73.45 +1 41334..42218 - 294 124265235 - Mpe_A0042 - BrkB-like serum-resistance protein 43 68.21 0 42228..42422 - 64 124265236 - Mpe_A0043 - hypothetical protein 44 68.98 0 42602..42904 - 100 124265237 - Mpe_A0044 - hypothetical protein 45 72.92 0 43073..43552 + 159 124265238 - Mpe_A0045 - hypothetical protein 46 71.67 0 43653..44651 - 332 124265239 - Mpe_A0046 - hypothetical protein 47 71.22 0 44687..45937 - 416 124265240 - Mpe_A0047 - cardiolipin synthase 2 48 69.91 0 45934..46704 - 256 124265241 - Mpe_A0048 - hypothetical protein 49 73.68 +1 46842..47468 + 208 124265242 - Mpe_A0049 - DNA-directed DNA polymerase 50 72.81 0 47465..48262 + 265 124265243 - Mpe_A0050 - RNA polymerase sigma factor for flagellar operon 51 71.49 0 48537..49634 + 365 124265244 - Mpe_A0051 - putative carboxypeptidase 52 75.38 +1 49631..50422 + 263 124265245 - Mpe_A0052 - hydrolase or acyltransferase-like protein 53 68.38 0 50582..51397 + 271 124265246 - Mpe_A0053 - transglutaminase-like domain-containing protein 54 72.56 0 51426..52172 - 248 124265247 - Mpe_A0054 - carboxylesterase 55 72.02 0 52184..52762 + 192 124265248 - Mpe_A0055 - hypothetical protein 56 63.93 -1 52860..53261 - 133 124265249 - Mpe_A0056 - hypothetical protein 57 73.66 +1 53590..54147 + 185 124265250 - Mpe_A0057 - MarR family transcriptional regulator 58 69.46 0 54198..54626 + 142 124265251 - Mpe_A0058 - putative organic hydroperoxide resistance protein 59 67.24 0 54678..55028 + 116 124265252 - Mpe_A0059 - putative transmembrane protein 60 72.03 0 55068..56669 - 533 124265253 - Mpe_A0060 - putative signal peptide protein 61 64.04 -1 56647..57447 - 266 124265254 fimB Mpe_A0061 - fimbrial assembly protein 62 68.80 0 57555..58070 + 171 124265255 moaC Mpe_A0062 - GTP cyclohydrolase subunit MoaC 63 68.05 0 58085..59680 - 531 124265256 rfaL Mpe_A0063 - O-antigen polymerase 64 59.39 -2 59890..60150 - 86 124265257 - Mpe_A0064 - hypothetical protein 65 61.60 -1 60158..60670 - 170 124265258 fimA Mpe_A0065 - pilin 66 70.65 0 60884..61687 - 267 124265259 - Mpe_A0066 - cAMP phosphodiesterase 67 63.50 -1 61904..62566 - 220 124265260 - Mpe_A0067 - hypothetical protein 68 68.02 0 62646..63455 - 269 124265261 - Mpe_A0068 - serine/threonine specific protein phosphatase (putative) 69 72.67 0 63491..64573 - 360 124265262 - Mpe_A0069 - putative serine/threonine protein kinase 70 66.52 0 64743..65447 - 234 124265263 - Mpe_A0070 - hypothetical protein 71 66.89 0 65634..66527 - 297 124265264 - Mpe_A0071 - succinyl-CoA synthetase subunit alpha 72 66.15 0 66548..67708 - 386 124265265 sucC Mpe_A0072 - succinyl-CoA synthetase subunit beta 73 68.29 0 67929..68852 + 307 124265266 - Mpe_A0073 - N-acetyl-gamma-glutamyl-phosphate reductase 74 69.80 0 68858..69367 - 169 124265267 - Mpe_A0074 - putative regulatory protein RecX 75 63.59 -1 69411..70484 - 357 124265268 - Mpe_A0075 - RecA protein 76 67.86 0 70626..71297 + 223 124265269 - Mpe_A0076 - two component transcriptional regulator 77 71.37 0 71330..72859 + 509 124265270 - Mpe_A0077 - putative transmembrane sensor histidine kinase transcription regulator protein 78 69.89 0 72947..74248 + 433 124265271 - Mpe_A0078 - alpha/beta fold family hydrolase 79 67.01 0 74265..75422 - 385 124265272 - Mpe_A0079 - putative rod shape-determining transmembrane protein 80 68.89 0 75419..77530 - 703 124265273 - Mpe_A0080 - peptidoglycan glycosyltransferase 81 70.31 0 77559..78080 - 173 124265274 - Mpe_A0081 - putative rod shape-determining MreD transmembrane protein 82 72.54 0 78077..79012 - 311 124265275 - Mpe_A0082 - rod shape-determining protein MreC 83 67.05 0 79154..80197 - 347 124265276 - Mpe_A0083 - rod shape-determining protein MreB 84 69.33 0 80485..80784 + 99 124265277 - Mpe_A0084 - aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C 85 71.50 0 80781..82271 + 496 124265278 - Mpe_A0085 - aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit A 86 68.32 0 82273..83721 + 482 124265279 - Mpe_A0086 - aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B 87 69.47 0 83755..84468 - 237 124265280 - Mpe_A0087 - hypothetical protein 88 67.94 0 84496..85200 - 234 124265281 pyrE Mpe_A0088 - orotate phosphoribosyltransferase 89 65.28 0 85229..86020 + 263 124265282 - Mpe_A0089 - DNA-(apurinic or apyrimidinic site) lyase 90 67.58 0 86052..86270 + 72 124265283 - Mpe_A0090 - hypothetical protein 91 63.10 -1 86301..87506 + 401 124265284 - Mpe_A0091 - acyltransferase-like protein 92 71.60 0 87547..88194 + 215 124265285 - Mpe_A0092 - putative metallo-beta-lactamase family protein 93 71.16 0 88219..89241 - 340 124265286 - Mpe_A0093 - putative signal peptide protein 94 71.03 0 89238..90773 - 511 124265287 - Mpe_A0094 - hypothetical protein 95 65.82 0 90899..91135 + 78 124265288 - Mpe_A0095 - hypothetical protein 96 73.12 +1 91316..91888 + 190 124265289 - Mpe_A0096 - hypothetical protein 97 69.77 0 91908..92552 - 214 124265290 - Mpe_A0097 - DNA-3-methyladenine glycosylase I 98 73.42 +1 92605..92841 - 78 124265291 - Mpe_A0098 - hypothetical protein 99 71.28 0 92985..95801 - 938 124265292 - Mpe_A0099 - signal transduction histidine kinase-like protein 100 70.13 0 95876..96481 - 201 124265293 - Mpe_A0100 - 2-hydroxychromene-2-carboxylate isomerase 69.05 MEAN 3.88 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.