IslandPath Analysis: Methylibium petroleiphilum PM1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 69.05   STD DEV: 3.88
Methylibium petroleiphilum PM1, complete genome - 1..4044195
3819 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 66.52	0	186..1589	+	467	124265194	-	Mpe_A0001	-	chromosomal replication initiator protein DnaA
2	 63.96	-1	1824..2930	+	368	124265195	-	Mpe_A0002	-	DNA polymerase III, beta subunit
3	 66.04	0	3028..5583	+	851	124265196	-	Mpe_A0003	-	DNA gyrase subunit B
4	 68.55	0	5597..5914	+	105	124265197	-	Mpe_A0004	-	hypothetical protein
5	 67.36	0	5980..7566	+	528	124265198	-	Mpe_A0005	-	type I restriction-modification system, M subunit
6	 61.99	-1	7643..8881	+	412	124265199	-	Mpe_A0006	-	restriction modification system, type I
7	 62.22	-1	8934..10169	+	411	124265200	-	Mpe_A0007	-	ATPase
8	 63.00	-1	10201..10773	+	190	124265201	-	Mpe_A0008	-	hypothetical protein
9	 54.58	-2	10870..11109	-	79	124265202	-	Mpe_A0009	-	hypothetical protein
10	 70.14	0	11121..12272	+	383	124265203	-	Mpe_A0010	-	hypothetical protein
11	 65.69	0	12269..15454	+	1061	124265204	-	Mpe_A0011	-	type I site-specific deoxyribonuclease
12	 74.78	+1	15560..17260	+	566	124265205	-	Mpe_A0012	-	cyclic nucleotide-regulated FAD-dependent pyridine nucleotide-disulphide oxidoreductase
13	 68.63	0	17363..17515	+	50	124265206	-	Mpe_A0013	-	hypothetical protein
14	 73.19	+1	17722..18150	+	142	124265207	-	Mpe_A0014	-	hypothetical protein
15	 73.03	+1	18282..18611	+	109	124265208	-	Mpe_A0015	-	putative transmembrane protein
16	 74.50	+1	18623..20065	-	480	124265209	-	Mpe_A0016	-	coenzyme F390 synthetase-like protein
17	 72.60	0	20193..21035	+	280	124265210	-	Mpe_A0017	-	hypothetical protein
18	 70.93	0	21070..21867	+	265	124265211	-	Mpe_A0018	-	formate/nitrate transporter
19	 75.06	+1	21840..23126	-	428	124265212	-	Mpe_A0019	-	putative RNA polymerase sigma factor
20	 67.63	0	23141..23554	-	137	124265213	-	Mpe_A0020	-	hypothetical protein
21	 72.71	0	23594..24007	-	137	124265214	-	Mpe_A0021	-	hypothetical protein
22	 71.07	0	24138..24500	-	120	124265215	-	Mpe_A0022	-	hypothetical protein
23	 73.51	+1	24591..26576	-	661	124265216	-	Mpe_A0023	-	putative cysteine desulfurase
24	 67.63	0	26589..27518	-	309	124265217	-	Mpe_A0024	-	hypothetical protein
25	 72.36	0	27645..27890	-	81	124265218	-	Mpe_A0025	-	putative DNA-binding protein
26	 72.24	0	27887..28855	-	322	124265219	-	Mpe_A0026	-	Serine O-acetyltransferase
27	 72.65	0	28840..29307	-	155	124265220	-	Mpe_A0027	-	hypothetical protein
28	 69.28	0	29475..30776	-	433	124265221	-	Mpe_A0028	-	O-acetylhomoserine aminocarboxypropyltransferase
29	 68.79	0	30888..31310	-	140	124265222	-	Mpe_A0029	-	PhnB protein
30	 67.07	0	31397..31645	-	82	124265223	-	Mpe_A0030	-	hypothetical protein
31	 76.97	+2	31703..32032	-	109	124265224	-	Mpe_A0031	-	hypothetical protein
32	 70.89	0	32643..34133	-	496	124265225	-	Mpe_A0032	-	hypothetical protein
33	 71.93	0	34230..34457	+	75	124265226	-	Mpe_A0033	-	hypothetical protein
34	 76.62	+1	34465..35067	-	200	124265227	-	Mpe_A0034	-	hypothetical protein
35	 74.88	+1	35375..35995	+	206	124265228	-	Mpe_A0035	-	TetR family transcriptional regulator
36	 72.39	0	36088..36786	+	232	124265229	-	Mpe_A0036	-	putative short chain dehydrogenase
37	 74.41	+1	36822..37454	-	210	124265230	-	Mpe_A0037	-	hypothetical protein
38	 72.31	0	37634..38236	+	200	124265231	-	Mpe_A0038	-	putative paraquat-inducible protein
39	 70.74	0	38347..39009	+	220	124265232	-	Mpe_A0039	-	putative paraquat-inducible protein
40	 70.29	0	38997..40706	+	569	124265233	-	Mpe_A0040	-	paraquat-inducible protein
41	 76.81	+1	40703..41323	+	206	124265234	-	Mpe_A0041	-	putative lipoprotein
42	 73.45	+1	41334..42218	-	294	124265235	-	Mpe_A0042	-	BrkB-like serum-resistance protein
43	 68.21	0	42228..42422	-	64	124265236	-	Mpe_A0043	-	hypothetical protein
44	 68.98	0	42602..42904	-	100	124265237	-	Mpe_A0044	-	hypothetical protein
45	 72.92	0	43073..43552	+	159	124265238	-	Mpe_A0045	-	hypothetical protein
46	 71.67	0	43653..44651	-	332	124265239	-	Mpe_A0046	-	hypothetical protein
47	 71.22	0	44687..45937	-	416	124265240	-	Mpe_A0047	-	cardiolipin synthase 2
48	 69.91	0	45934..46704	-	256	124265241	-	Mpe_A0048	-	hypothetical protein
49	 73.68	+1	46842..47468	+	208	124265242	-	Mpe_A0049	-	DNA-directed DNA polymerase
50	 72.81	0	47465..48262	+	265	124265243	-	Mpe_A0050	-	RNA polymerase sigma factor for flagellar operon
51	 71.49	0	48537..49634	+	365	124265244	-	Mpe_A0051	-	putative carboxypeptidase
52	 75.38	+1	49631..50422	+	263	124265245	-	Mpe_A0052	-	hydrolase or acyltransferase-like protein
53	 68.38	0	50582..51397	+	271	124265246	-	Mpe_A0053	-	transglutaminase-like domain-containing protein
54	 72.56	0	51426..52172	-	248	124265247	-	Mpe_A0054	-	carboxylesterase
55	 72.02	0	52184..52762	+	192	124265248	-	Mpe_A0055	-	hypothetical protein
56	 63.93	-1	52860..53261	-	133	124265249	-	Mpe_A0056	-	hypothetical protein
57	 73.66	+1	53590..54147	+	185	124265250	-	Mpe_A0057	-	MarR family transcriptional regulator
58	 69.46	0	54198..54626	+	142	124265251	-	Mpe_A0058	-	putative organic hydroperoxide resistance protein
59	 67.24	0	54678..55028	+	116	124265252	-	Mpe_A0059	-	putative transmembrane protein
60	 72.03	0	55068..56669	-	533	124265253	-	Mpe_A0060	-	putative signal peptide protein
61	 64.04	-1	56647..57447	-	266	124265254	fimB	Mpe_A0061	-	fimbrial assembly protein
62	 68.80	0	57555..58070	+	171	124265255	moaC	Mpe_A0062	-	GTP cyclohydrolase subunit MoaC
63	 68.05	0	58085..59680	-	531	124265256	rfaL	Mpe_A0063	-	O-antigen polymerase
64	 59.39	-2	59890..60150	-	86	124265257	-	Mpe_A0064	-	hypothetical protein
65	 61.60	-1	60158..60670	-	170	124265258	fimA	Mpe_A0065	-	pilin
66	 70.65	0	60884..61687	-	267	124265259	-	Mpe_A0066	-	cAMP phosphodiesterase
67	 63.50	-1	61904..62566	-	220	124265260	-	Mpe_A0067	-	hypothetical protein
68	 68.02	0	62646..63455	-	269	124265261	-	Mpe_A0068	-	serine/threonine specific protein phosphatase (putative)
69	 72.67	0	63491..64573	-	360	124265262	-	Mpe_A0069	-	putative serine/threonine protein kinase
70	 66.52	0	64743..65447	-	234	124265263	-	Mpe_A0070	-	hypothetical protein
71	 66.89	0	65634..66527	-	297	124265264	-	Mpe_A0071	-	succinyl-CoA synthetase subunit alpha
72	 66.15	0	66548..67708	-	386	124265265	sucC	Mpe_A0072	-	succinyl-CoA synthetase subunit beta
73	 68.29	0	67929..68852	+	307	124265266	-	Mpe_A0073	-	N-acetyl-gamma-glutamyl-phosphate reductase
74	 69.80	0	68858..69367	-	169	124265267	-	Mpe_A0074	-	putative regulatory protein RecX
75	 63.59	-1	69411..70484	-	357	124265268	-	Mpe_A0075	-	RecA protein
76	 67.86	0	70626..71297	+	223	124265269	-	Mpe_A0076	-	two component transcriptional regulator
77	 71.37	0	71330..72859	+	509	124265270	-	Mpe_A0077	-	putative transmembrane sensor histidine kinase transcription regulator protein
78	 69.89	0	72947..74248	+	433	124265271	-	Mpe_A0078	-	alpha/beta fold family hydrolase
79	 67.01	0	74265..75422	-	385	124265272	-	Mpe_A0079	-	putative rod shape-determining transmembrane protein
80	 68.89	0	75419..77530	-	703	124265273	-	Mpe_A0080	-	peptidoglycan glycosyltransferase
81	 70.31	0	77559..78080	-	173	124265274	-	Mpe_A0081	-	putative rod shape-determining MreD transmembrane protein
82	 72.54	0	78077..79012	-	311	124265275	-	Mpe_A0082	-	rod shape-determining protein MreC
83	 67.05	0	79154..80197	-	347	124265276	-	Mpe_A0083	-	rod shape-determining protein MreB
84	 69.33	0	80485..80784	+	99	124265277	-	Mpe_A0084	-	aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C
85	 71.50	0	80781..82271	+	496	124265278	-	Mpe_A0085	-	aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit A
86	 68.32	0	82273..83721	+	482	124265279	-	Mpe_A0086	-	aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B
87	 69.47	0	83755..84468	-	237	124265280	-	Mpe_A0087	-	hypothetical protein
88	 67.94	0	84496..85200	-	234	124265281	pyrE	Mpe_A0088	-	orotate phosphoribosyltransferase
89	 65.28	0	85229..86020	+	263	124265282	-	Mpe_A0089	-	DNA-(apurinic or apyrimidinic site) lyase
90	 67.58	0	86052..86270	+	72	124265283	-	Mpe_A0090	-	hypothetical protein
91	 63.10	-1	86301..87506	+	401	124265284	-	Mpe_A0091	-	acyltransferase-like protein
92	 71.60	0	87547..88194	+	215	124265285	-	Mpe_A0092	-	putative metallo-beta-lactamase family protein
93	 71.16	0	88219..89241	-	340	124265286	-	Mpe_A0093	-	putative signal peptide protein
94	 71.03	0	89238..90773	-	511	124265287	-	Mpe_A0094	-	hypothetical protein
95	 65.82	0	90899..91135	+	78	124265288	-	Mpe_A0095	-	hypothetical protein
96	 73.12	+1	91316..91888	+	190	124265289	-	Mpe_A0096	-	hypothetical protein
97	 69.77	0	91908..92552	-	214	124265290	-	Mpe_A0097	-	DNA-3-methyladenine glycosylase I
98	 73.42	+1	92605..92841	-	78	124265291	-	Mpe_A0098	-	hypothetical protein
99	 71.28	0	92985..95801	-	938	124265292	-	Mpe_A0099	-	signal transduction histidine kinase-like protein
100	 70.13	0	95876..96481	-	201	124265293	-	Mpe_A0100	-	2-hydroxychromene-2-carboxylate isomerase
69.05	MEAN

3.88	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.