IslandPath Analysis: Clostridium botulinum A str. ATCC 19397



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 28.83   STD DEV: 4.03
Clostridium botulinum A str. ATCC 19397, complete genome - 1..3863450
3552 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 27.77	0	1..1347	+	448	153930843	dnaA	CLB_0001	-	chromosomal replication initiation protein
2	 25.36	0	1610..2713	+	367	153931816	dnaN	CLB_0002	-	DNA polymerase III subunit beta
3	 24.15	-1	2732..2938	+	68	153932828	-	CLB_0003	-	S4 domain-containing protein
4	 23.11	-1	3007..4101	+	364	153933867	recF	CLB_0004	-	recombination protein F
5	 28.41	0	4122..4385	+	87	153931135	-	CLB_0005	-	hypothetical protein
6	 31.87	0	4403..6316	+	637	153931278	gyrB	CLB_0006	-	DNA gyrase subunit B
7	 28.70	0	6342..8867	+	841	153932201	gyrA	CLB_0007	-	DNA gyrase subunit A
8	 18.76	-2	14442..14894	+	150	153933340	-	CLB_0015	-	hypothetical protein
9	 24.90	0	14910..15431	+	173	153934316	-	CLB_0016	-	putative transcriptional regulator
10	 29.64	0	15433..16596	+	387	153930946	-	CLB_0017	-	iron-sulfur cluster-binding protein
11	 22.74	-1	16601..19282	+	893	153932174	-	CLB_0018	-	hypothetical protein
12	 22.01	-1	19419..20195	+	258	153931833	-	CLB_0019	-	ErfK/YbiS/YcfS/YnhG family protein
13	 25.18	0	20220..21617	+	465	153932880	-	CLB_0020	-	oxidoreductase, FAD dependent
14	 24.29	-1	21634..21987	+	117	153934105	-	CLB_0021	-	hypothetical protein
15	 29.59	0	22357..23637	+	426	153931011	serS-1	CLB_0022	-	seryl-tRNA synthetase
16	 36.09	+1	26616..26978	+	120	153933555	-	CLB_0029	-	hypothetical protein
17	 25.21	0	27051..27899	+	282	153932329	-	CLB_0030	-	antibiotic ABC transporter, ATP-binding protein
18	 22.54	-1	27908..28741	+	277	153931023	-	CLB_0031	-	hypothetical protein
19	 19.65	-2	28753..29556	+	267	153933982	-	CLB_0032	-	hypothetical protein
20	 24.23	-1	29573..30385	+	270	153931424	-	CLB_0033	-	hypothetical protein
21	 23.20	-1	30625..31512	-	295	153932372	psd	CLB_0034	-	phosphatidylserine decarboxylase
22	 23.14	-1	31615..33213	-	532	153933391	-	CLB_0035	-	hypothetical protein
23	 23.36	-1	33289..33609	-	106	153933485	-	CLB_0036	-	hypothetical protein
24	 23.98	-1	34004..35542	+	512	153931039	-	CLB_0038	-	putative sensory box sigma-54 dependent transcriptional regulator
25	 33.50	+1	35702..36904	+	400	153931933	megL	CLB_0039	-	methionine gamma-lyase
26	 26.94	0	37028..37465	+	145	153931005	-	CLB_0040	-	cytidine/deoxycytidylate deaminase family protein
27	 27.92	0	38110..39735	+	541	153932975	dnaX	CLB_0042	-	DNA polymerase III subunits gamma and tau
28	 36.26	+1	39800..40141	+	113	153934028	-	CLB_0043	-	hypothetical protein
29	 30.49	0	40174..40770	+	198	153932718	recR	CLB_0044	-	recombination protein RecR
30	 26.14	0	40827..41090	+	87	153931902	-	CLB_0045	-	hypothetical protein
31	 23.75	-1	41240..41500	+	86	153931214	bofA	CLB_0046	-	sigma-K factor processing regulatory protein BofA
32	 27.56	0	41651..42343	+	230	153931903	sfsA	CLB_0047	-	sugar fermentation stimulation protein A
33	 29.24	0	42399..42887	+	162	153931127	-	CLB_0048	-	NUDIX family hydrolase
34	 33.33	+1	43005..43727	+	240	153933357	-	CLB_0049	-	hypothetical protein
35	 25.60	0	43861..44649	+	262	153932739	-	CLB_0050	-	iron-sulfur cluster-binding protein
36	 19.75	-2	44668..44829	+	53	153930818	-	CLB_0051	-	hypothetical protein
37	 28.79	0	45212..45916	+	234	153933799	-	CLB_0052	-	ThiF domain-containing protein
38	 24.68	-1	45999..47108	+	369	153933366	-	CLB_0053	-	major facilitator superfamily protein
39	 21.16	-1	47137..48081	+	314	153934039	-	CLB_0054	-	acetyltransferase
40	 28.31	0	53636..54232	-	198	153931907	-	CLB_0061	-	uracil-DNA glycosylase family protein
41	 25.35	0	60393..60956	+	187	153933268	-	CLB_0068	-	RNA polymerase factor sigma-70
42	 27.30	0	60953..62395	+	480	153932144	-	CLB_0069	-	hypothetical protein
43	 28.09	0	68057..68800	+	247	153931321	-	CLB_0076	-	peptidil-prolyl isomerase family protein
44	 26.88	0	74539..75282	+	247	153932695	-	CLB_0082	-	NAD-dependent deacetylase
45	 27.61	0	75468..76376	-	302	153932350	-	CLB_0084	-	LD-carboxypeptidase family protein
46	 25.90	0	76412..77353	-	313	153931626	-	CLB_0085	-	CorA family protein
47	 19.84	-2	77718..78221	+	167	153933952	-	CLB_0086	-	hypothetical protein
48	 26.79	0	78226..79386	-	386	153931577	-	CLB_0087	-	amidohydrolase-like protein
49	 25.35	0	79640..79852	+	70	153933961	-	CLB_0088	-	csfB protein-like protein
50	 25.60	0	79831..81279	+	482	153933078	-	CLB_0089	-	Orn/Lys/Arg decarboxylase
51	 27.30	0	81303..81998	+	231	153932140	-	CLB_0090	-	putative thymidylate kinase
52	 33.03	+1	82079..82408	+	109	153932934	-	CLB_0091	-	hypothetical protein
53	 22.65	-1	82426..83370	+	314	153933729	-	CLB_0092	-	DNA polymerase III subunit delta'
54	 29.84	0	83372..84286	+	304	153930936	-	CLB_0093	-	PSP1 domain-containing protein
55	 27.94	0	84298..84501	+	67	153931682	-	CLB_0094	-	hypothetical protein
56	 41.52	+2	84583..84753	+	56	153934228	-	CLB_0095	-	ferredoxin, 4Fe-4S
57	 28.34	0	84874..85614	+	246	153931253	-	CLB_0096	-	hypothetical protein
58	 25.38	0	85634..86488	+	284	153933655	-	CLB_0097	-	tetrapyrrole methylase family protein
59	 34.24	+1	86644..87747	+	367	153931064	-	CLB_0098	-	NlpC/P60 family protein
60	 28.86	0	87847..88092	-	81	153931259	-	CLB_0099	-	AbrB family transcriptional regulator
61	 22.88	-1	88899..89510	+	203	153931071	-	CLB_0100	-	hypothetical protein
62	 29.37	0	89932..91143	+	403	153931499	arcA-1	CLB_0101	-	arginine deiminase
63	 28.85	0	91229..91696	-	155	153932191	ispF	CLB_0102	-	2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase
64	 18.02	-2	91772..92104	-	110	153933827	-	CLB_0103	-	hypothetical protein
65	 26.21	0	92432..93301	+	289	153932306	-	CLB_0104	-	polysaccharide deacetylase family protein
66	 23.46	-1	93570..93812	-	80	153932671	-	CLB_0105	-	hypothetical protein
67	 30.21	0	93932..94507	+	191	153934074	spmA	CLB_0106	-	spore maturation protein A
68	 30.83	0	94520..95038	+	172	153931348	-	CLB_0107	-	spore maturation protein B
69	 28.33	0	95283..96620	-	445	153932894	-	CLB_0108	-	MATE efflux family protein
70	 30.72	0	96764..97336	+	190	153933715	udgA	CLB_0109	-	uracil-DNA glycosylase
71	 20.00	-2	97365..97799	+	144	153930891	-	CLB_0110	-	MarR family transcriptional regulator
72	 29.67	0	98181..100118	+	645	153931420	metG	CLB_0111	-	methionyl-tRNA synthetase
73	 22.44	-1	100283..101788	+	501	153931982	-	CLB_0112	-	hypothetical protein
74	 28.05	0	101939..102733	+	264	153932762	-	CLB_0113	-	TatD family hydrolase
75	 32.77	0	102961..104019	+	352	153932954	-	CLB_0114	-	3D/G5 domain-containing protein
76	 32.42	0	104092..104637	+	181	153931947	-	CLB_0115	-	primase-related protein
77	 27.54	0	104639..105466	+	275	153931501	ksgA	CLB_0116	-	dimethyladenosine transferase
78	 26.73	0	105545..106786	+	413	153933996	-	CLB_0117	-	hypothetical protein
79	 21.94	-1	106943..107530	+	195	153932603	-	CLB_0118	-	hypothetical protein
80	 23.14	-1	107699..108532	+	277	153933646	-	CLB_0119	-	putative lipoprotein
81	 28.91	0	108700..109761	+	353	153930962	-	CLB_0120	-	RND family marcrolide efflux protein
82	 29.89	0	109772..110467	+	231	153933074	-	CLB_0121	-	putative macrolide efflux ABC transporter, ATP-binding protein
83	 29.61	0	110464..111672	+	402	153933872	-	CLB_0122	-	putative macrolide efflux ABC transporter, permease protein
84	 32.27	0	111754..112596	+	280	153931578	-	CLB_0123	-	MRP protein-like protein
85	 31.77	0	112736..112927	+	63	153932312	-	CLB_0124	-	iron-sulfur cluster-binding protein
86	 18.52	-2	113002..113136	+	44	153934313	-	CLB_0125	-	hypothetical protein
87	 24.86	0	113373..113549	-	58	153933497	-	CLB_0126	-	hypothetical protein
88	 19.33	-2	113627..114697	+	356	153930953	-	CLB_0127	-	putative diguanylate cyclase
89	 24.55	-1	114754..115482	+	242	153931920	-	CLB_0128	-	mgtC family protein
90	 29.69	0	115772..117913	+	713	153933790	nrdD	CLB_0129	-	anaerobic ribonucleoside triphosphate reductase
91	 25.19	0	117930..118445	+	171	153931273	nrdG	CLB_0130	-	anaerobic ribonucleoside-triphosphate reductase activating protein
92	 36.73	+1	118698..118844	-	48	153933371	-	CLB_0131	-	hypothetical protein
93	 19.70	-2	118982..119656	-	224	153932244	-	CLB_0132	-	hypothetical protein
94	 26.55	0	119658..119996	-	112	153932576	-	CLB_0133	-	PadR family transcriptional regulator
95	 25.35	0	120117..120755	-	212	153931647	-	CLB_0134	-	putative zinc-dependent hydrolase
96	 30.25	0	121197..124313	+	1038	153932381	ileS	CLB_0135	-	isoleucyl-tRNA synthetase
97	 27.33	0	124464..125462	+	332	153933106	-	CLB_0136	-	LacI family transcription regulator
98	 23.86	-1	125678..129730	+	1350	153933124	-	CLB_0137	-	hypothetical protein
99	 27.90	0	129805..130872	+	355	153933815	-	CLB_0138	-	putative mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase
100	 28.76	0	131208..132497	+	429	153931061	-	CLB_0139	-	hypothetical protein
28.83	MEAN

4.03	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.