IslandPath Analysis: Rubrobacter xylanophilus DSM 9941



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 70.78   STD DEV: 4.99
Rubrobacter xylanophilus DSM 9941, complete genome - 1..3225748
3140 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 62.82	-1	2..1354	+	450	108802857	-	Rxyl_0001	-	chromosomal replication initiator protein DnaA
2	 66.67	0	1853..2980	+	375	108802858	-	Rxyl_0002	-	DNA polymerase III, beta subunit
3	 72.31	0	2980..3174	+	64	108802859	-	Rxyl_0003	-	RNA-binding S4
4	 70.67	0	3171..4295	+	374	108802860	-	Rxyl_0004	-	DNA replication and repair protein RecF
5	 65.48	-1	4458..6392	+	644	108802861	-	Rxyl_0005	-	DNA gyrase subunit B
6	 68.27	0	6385..8943	+	852	108802862	-	Rxyl_0006	-	DNA gyrase subunit A
7	 67.08	0	9127..10590	+	487	108802863	-	Rxyl_0007	-	hypothetical protein
8	 69.18	0	10572..10850	-	92	108802864	-	Rxyl_0008	-	hypothetical protein
9	 67.46	0	10952..11329	+	125	108802865	-	Rxyl_0009	-	hypothetical protein
10	 62.80	-1	11928..12626	+	232	108802866	-	Rxyl_0010	-	integral membrane protein
11	 68.42	0	12630..14399	+	589	108802867	sdhA	Rxyl_0011	-	succinate dehydrogenase flavoprotein subunit
12	 65.81	0	14396..15214	+	272	108802868	-	Rxyl_0012	-	fumarate reductase iron-sulfur subunit
13	 73.85	0	15373..15873	+	166	108802869	-	Rxyl_0013	-	NUDIX hydrolase
14	 75.26	0	15883..16452	-	189	108802870	-	Rxyl_0014	-	phosphopantothenoylcysteine decarboxylase
15	 67.08	0	16487..16729	-	80	108802871	-	Rxyl_0015	-	RDD domain-containing protein
16	 74.97	0	17060..17842	+	260	108802872	-	Rxyl_0016	-	short-chain dehydrogenase/reductase SDR
17	 72.79	0	17851..18471	+	206	108802873	-	Rxyl_0017	-	hypothetical protein
18	 75.00	0	18428..18799	-	123	108802874	-	Rxyl_0018	-	hypothetical protein
19	 71.66	0	18805..21246	-	813	108802875	-	Rxyl_0019	-	beta-lactamase-like protein
20	 65.83	0	21291..21647	+	118	108802876	-	Rxyl_0020	-	hypothetical protein
21	 73.76	0	21654..23654	-	666	108802877	-	Rxyl_0021	-	serine/threonine protein kinase
22	 70.50	0	23672..25186	-	504	108802878	-	Rxyl_0022	-	peptidoglycan glycosyltransferase
23	 67.21	0	25183..26472	-	429	108802879	-	Rxyl_0023	-	cell cycle protein
24	 73.21	0	26479..27624	-	381	108802880	-	Rxyl_0024	-	protein serine/threonine phosphatases
25	 71.37	0	27627..28094	-	155	108802881	-	Rxyl_0025	-	FHA domain-containing protein
26	 69.75	0	28099..28941	-	280	108802882	-	Rxyl_0026	-	FHA domain-containing protein
27	 74.78	0	28951..30540	-	529	108802883	-	Rxyl_0027	-	serine/threonine protein kinase
28	 70.82	0	30831..31817	+	328	108802884	-	Rxyl_0028	-	hypothetical protein
29	 63.51	-1	31839..32123	+	94	108802885	-	Rxyl_0029	-	AsnC family transcriptional regulator
30	 70.29	0	32128..33258	-	376	108802886	-	Rxyl_0030	-	carboxylate-amine ligase
31	 70.63	0	33290..33895	-	201	108802887	-	Rxyl_0031	-	redoxin
32	 73.46	0	34015..34470	+	151	108802888	-	Rxyl_0032	-	DoxX
33	 77.43	+1	34412..35284	-	290	108802889	-	Rxyl_0033	-	alpha/beta hydrolase fold
34	 75.13	0	35295..37067	-	590	108802890	-	Rxyl_0034	-	DNA mismatch repair protein MutL
35	 73.08	0	37137..37619	+	160	108802891	-	Rxyl_0035	-	biotin carboxyl carrier protein
36	 72.63	0	37623..39014	+	463	108802892	-	Rxyl_0036	-	acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha / biotin carboxylase
37	 71.90	0	39047..39886	+	279	108802893	-	Rxyl_0037	-	metal-dependent enzyme-like protein
38	 71.44	0	39883..40782	-	299	108802894	-	Rxyl_0038	-	hypothetical protein
39	 71.68	0	40779..42215	-	478	108802895	-	Rxyl_0039	-	hypothetical protein
40	 72.75	0	42266..42988	+	240	108802896	-	Rxyl_0040	-	DnaD and phage-associated region
41	 70.39	0	43068..43793	+	241	108802897	-	Rxyl_0041	-	hypothetical protein
42	 73.43	0	43790..44395	+	201	108802898	-	Rxyl_0042	-	hypothetical protein
43	 72.73	0	44402..45193	+	263	108802899	-	Rxyl_0043	-	hypothetical protein
44	 73.97	0	45190..46065	+	291	108802900	-	Rxyl_0044	-	beta-lactamase-like protein
45	 68.54	0	46145..46570	+	141	108802901	-	Rxyl_0045	-	single-strand binding protein
46	 76.16	+1	46567..47430	-	287	108802902	-	Rxyl_0046	-	hypothetical protein
47	 73.84	0	47427..48221	-	264	108802903	-	Rxyl_0047	-	MerR family transcriptional regulator
48	 70.31	0	48394..49491	+	365	108802904	-	Rxyl_0048	-	transaldolase
49	 71.40	0	49520..51400	+	626	108802905	-	Rxyl_0049	-	transketolase
50	 71.79	0	51418..52335	+	305	108802906	-	Rxyl_0050	-	6-phosphogluconate dehydrogenase-like protein
51	 71.36	0	52332..53864	+	510	108802907	-	Rxyl_0051	-	glucose-6-phosphate 1-dehydrogenase
52	 76.38	+1	53861..54931	+	356	108802908	-	Rxyl_0052	-	glucose-6-P dehydrogenase subunit-like protein
53	 75.99	+1	54928..55656	+	242	108802909	-	Rxyl_0053	-	6-phosphogluconolactonase
54	 72.86	0	55741..56289	+	182	108802910	-	Rxyl_0054	-	hypothetical protein
55	 67.24	0	56429..57478	-	349	108802911	-	Rxyl_0055	-	NAD-dependent epimerase/dehydratase
56	 75.35	0	57615..58604	+	329	108802912	-	Rxyl_0056	-	alcohol dehydrogenase GroES-like protein
57	 68.73	0	58656..59624	+	322	108802913	-	Rxyl_0057	-	magnesium and cobalt transport protein CorA
58	 78.29	+1	59615..60397	+	260	108802914	-	Rxyl_0058	-	biotin/lipoate A/B protein ligase
59	 70.93	0	60430..61908	+	492	108802915	-	Rxyl_0059	-	ABC-2 type transporter
60	 73.48	0	61914..62852	+	312	108802916	-	Rxyl_0060	-	ABC transporter related
61	 69.44	0	62882..64033	+	383	108802917	-	Rxyl_0061	-	hypothetical protein
62	 69.18	0	64030..65340	-	436	108802918	-	Rxyl_0062	-	extracellular solute-binding protein
63	 77.69	+1	65491..66288	+	265	108802919	-	Rxyl_0063	-	abortive infection protein
64	 72.38	0	66314..67048	+	244	108802920	-	Rxyl_0064	-	hypothetical protein
65	 70.54	0	67084..67470	+	128	108802921	-	Rxyl_0065	-	GntR family transcriptional regulator
66	 74.87	0	67457..68383	+	308	108802922	-	Rxyl_0066	-	ABC transporter related
67	 66.08	0	68373..69221	-	282	108802923	-	Rxyl_0067	-	binding-protein-dependent transport systems inner membrane component
68	 67.64	0	69223..70143	-	306	108802924	-	Rxyl_0068	-	binding-protein-dependent transport systems inner membrane component
69	 70.75	0	70158..71456	-	432	108802925	-	Rxyl_0069	-	twin-arginine translocation pathway signal
70	 70.36	0	71453..74266	-	937	108802926	-	Rxyl_0070	-	glycoside hydrolase family protein
71	 69.91	0	74263..74601	-	112	108802927	-	Rxyl_0071	-	hypothetical protein
72	 73.62	0	75249..76313	-	354	108802928	-	Rxyl_0072	-	dipeptidase
73	 70.00	0	76310..77119	-	269	108802929	dapD	Rxyl_0073	-	2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransferase
74	 72.50	0	77177..78394	-	405	108802930	-	Rxyl_0074	-	aminotransferase
75	 71.22	0	78454..79704	+	416	108802931	-	Rxyl_0075	-	diaminopimelate decarboxylase
76	 69.77	0	79822..81174	+	450	108802932	-	Rxyl_0076	-	major facilitator transporter
77	 73.36	0	81175..81921	+	248	108802933	-	Rxyl_0077	-	short-chain dehydrogenase/reductase SDR
78	 76.18	+1	81997..82953	+	318	108802934	-	Rxyl_0078	-	PfkB
79	 79.30	+1	82982..83638	+	218	108802935	-	Rxyl_0079	-	2-keto-3-deoxy-phosphogluconate aldolase
80	 76.83	+1	83635..84480	+	281	108802936	-	Rxyl_0080	-	D-mannonate oxidoreductase
81	 74.34	0	84572..86173	+	533	108802937	-	Rxyl_0081	-	GntR family transcriptional regulator
82	 69.90	0	86181..86675	-	164	108802938	-	Rxyl_0082	-	TQO small subunit DoxD
83	 65.19	-1	86899..87915	+	338	108802939	-	Rxyl_0083	-	twin-arginine translocation pathway signal
84	 69.70	0	87919..89103	+	394	108802940	-	Rxyl_0084	-	putative metal cation transporter
85	 73.12	0	89169..89648	+	159	108802941	-	Rxyl_0085	-	twin-arginine translocation pathway signal
86	 68.77	0	89704..90321	+	205	108802942	-	Rxyl_0086	-	hypothetical protein
87	 71.49	0	91359..91835	+	158	108802943	-	Rxyl_0088	-	regulatory protein, MarR
88	 70.89	0	91874..92797	+	307	108802944	-	Rxyl_0089	-	ABC transporter related
89	 73.48	0	92794..93615	+	273	108802945	-	Rxyl_0090	-	ABC-2 type transporter
90	 75.79	+1	93650..94942	+	430	108802946	-	Rxyl_0091	-	hypothetical protein
91	 66.23	0	94939..95397	-	152	108802947	-	Rxyl_0092	-	response regulator receiver protein
92	 72.73	0	95843..98413	+	856	108802948	-	Rxyl_0093	-	multi-sensor signal transduction histidine kinase
93	 73.84	0	98490..99158	+	222	108802949	-	Rxyl_0094	-	two component LuxR family transcriptional regulator
94	 74.65	0	99155..99943	-	262	108802950	-	Rxyl_0095	-	diaminopimelate epimerase
95	 75.99	+1	100363..101145	-	260	108802951	-	Rxyl_0096	-	dihydrodipicolinate reductase
96	 69.02	0	101142..102035	-	297	108802952	-	Rxyl_0097	-	dihydrodipicolinate synthase
97	 71.00	0	102028..103296	-	422	108802953	-	Rxyl_0098	-	aspartate kinase
98	 67.84	0	103337..103846	-	169	108802954	-	Rxyl_0099	-	hypothetical protein
99	 75.41	0	104425..105876	+	483	108802955	-	Rxyl_0100	-	hypothetical protein
100	 71.47	0	105879..106856	-	325	108802956	-	Rxyl_0101	-	abortive infection protein
70.78	MEAN

4.99	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.