IslandPath Analysis: Agrobacterium tumefaciens str. C58



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 59.52   STD DEV: 3.25
Agrobacterium tumefaciens str. C58 chromosome circular, complete sequence - 1..2841580
2765 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 57.91	0	203..1024	+	273	15887360	-	Atu0001	-	hypothetical protein
2	 57.83	0	1056..1655	+	199	159184119	maf	Atu0002	-	Maf-like protein
3	 57.72	0	1648..2508	+	286	159184120	aroE	Atu0003	-	shikimate 5-dehydrogenase
4	 56.19	-1	2508..3089	+	193	159184121	coaE	Atu0004	-	dephospho-CoA kinase
5	 57.65	0	3110..3808	+	232	15887364	dnaQ	Atu0005	-	DNA polymerase III subunit epsilon
6	 57.35	0	3907..4389	-	160	15887365	secB	Atu0006	-	preprotein translocase subunit SecB
7	 59.96	0	4493..5029	-	178	15887366	fxsA	Atu0007	-	FxsA
8	 59.33	0	5215..5868	+	217	159184122	-	Atu0008	-	hypothetical protein
9	 60.56	0	5865..6977	+	370	15887368	mltA	Atu0009	-	membrane-bound lytic murein transglycosylase
10	 58.25	0	6974..7543	+	189	15887369	-	Atu0010	-	hypothetical protein
11	 58.74	0	7540..7905	+	121	15887370	-	Atu0011	-	transcriptional regulator
12	 60.30	0	8064..10499	+	811	159184123	gyrB	Atu0012	-	DNA gyrase subunit B
13	 57.38	0	10604..11206	-	200	15887372	-	Atu0013	-	NAD(P)H-flavin oxidoreductase
14	 59.79	0	11335..12177	+	280	15887373	hpcE	Atu0014	-	2-hydroxyhepta-2,4-diene-1,7-dioate isomerase
15	 58.81	0	12339..13535	+	398	159184124	depA	Atu0015	-	intracellular PHB depolymerase
16	 58.85	0	13605..14372	+	255	15887375	-	Atu0016	-	hypothetical protein
17	 55.96	-1	14475..15137	+	220	15887376	trpF	Atu0017	-	N-(5'-phosphoribosyl)anthranilate isomerase
18	 59.38	0	15139..16359	+	406	159184125	trpB	Atu0018	-	tryptophan synthase subunit beta
19	 59.17	0	16364..17203	+	279	159184126	trpA	Atu0019	-	tryptophan synthase subunit alpha
20	 59.64	0	17231..18127	+	298	15887379	accD	Atu0020	-	acetyl-CoA carboxylase subunit beta
21	 58.04	0	18250..19593	+	447	15887380	folC	Atu0021	-	folylpolyglutamate synthase
22	 57.94	0	19641..19961	-	106	159184127	trxA	Atu0022	-	thioredoxin
23	 61.58	0	20039..23596	-	1185	159184128	uvrD	Atu0023	-	ATP-dependant DNA helicase
24	 63.94	+1	23586..26771	-	1061	15887383	-	Atu0024	-	hypothetical protein
25	 58.40	0	26768..27505	-	245	159184129	-	Atu0025	-	hypothetical protein
26	 58.20	0	27520..29031	-	503	15887385	-	Atu0026	-	hypothetical protein
27	 59.86	0	29028..31673	-	881	15887386	-	Atu0027	-	two component sensor kinase
28	 55.36	-1	31670..31837	-	55	159184130	-	Atu0028	-	hypothetical protein
29	 57.96	0	31882..33282	-	466	15887387	ahcY	Atu0029	-	S-adenosyl-L-homocysteine hydrolase
30	 62.32	0	33411..33686	-	91	15887388	ptsH	Atu0030	-	phosphocarrier protein HPr
31	 55.47	-1	33698..34099	-	133	15887389	-	Atu0031	-	PTS system, IIA component
32	 55.91	-1	34225..34689	-	154	15887390	-	Atu0032	-	hypothetical protein
33	 60.64	0	34679..36469	-	596	15887391	chvG	Atu0033	-	two component sensor kinase
34	 58.95	0	36525..37250	-	241	159184131	chvI	Atu0034	-	two component response regulator
35	 60.77	0	37589..39199	+	536	159184132	pckA	Atu0035	-	phosphoenolpyruvate carboxykinase
36	 60.92	0	39327..39761	+	144	159184133	-	Atu0036	-	hypothetical protein
37	 56.86	0	39781..40749	-	322	159184134	panK	Atu0037	-	pantothenate kinase
38	 59.88	0	40779..41102	-	107	159184135	hisE	Atu0038	-	phosphoribosyl-ATP pyrophosphatase
39	 58.94	0	41118..41894	-	258	15887397	hisF	Atu0039	-	imidazole glycerol phosphate synthase subunit HisF
40	 59.81	0	41891..42634	-	247	15887398	hisA	Atu0040	-	1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase
41	 60.98	0	42636..43286	-	216	159184136	hisH	Atu0041	-	imidazole glycerol phosphate synthase subunit HisH
42	 57.17	0	43288..43782	-	164	15887400	-	Atu8115	-	hypothetical protein
43	 58.63	0	43805..44401	-	198	159184137	hisB	Atu0043	-	imidazoleglycerol-phosphate dehydratase
44	 60.04	0	44644..45126	+	160	159184138	hslV	Atu0044	-	ATP-dependent protease peptidase subunit
45	 59.25	0	45214..46521	+	435	15887403	hslU	Atu0045	-	ATP-dependent protease ATP-binding subunit
46	 57.04	0	46716..47681	+	321	15887404	-	Atu0046	-	hypothetical protein
47	 59.42	0	47736..49970	+	744	15887405	glcB	Atu0047	-	malate synthase G
48	 61.06	0	50151..50864	-	237	159184139	-	Atu0048	-	hypothetical protein
49	 54.73	-1	51048..51533	+	161	159184140	-	Atu0049	-	hypothetical protein
50	 60.20	0	51594..52181	-	195	15887408	actR	Atu0050	-	two component response regulator
51	 60.70	0	52255..53562	-	435	159184141	actS	Atu0051	-	two component sensor kinase
52	 63.05	+1	53592..56078	-	828	159184142	hrpB	Atu0052	-	helicase
53	 48.97	-2	59238..59627	-	129	159184143	-	Atu0056	-	hypothetical protein
54	 52.71	-2	62235..62492	+	85	159184144	-	Atu0058	-	hypothetical protein
55	 58.65	0	63196..65004	+	602	15887415	recQ	Atu0061	-	ATP-dependent DNA helicase
56	 57.42	0	65054..66286	-	410	15887416	frcR	Atu0062	-	ROK family transcriptional regulator
57	 59.04	0	66551..67573	+	340	15887417	frcB	Atu0063	-	ABC transporter, substrate binding protein (sugar)
58	 56.97	0	67798..68880	+	360	159184145	frcC	Atu0064	-	ABC transporter, membrane spanning protein (sugar)
59	 59.26	0	68880..69662	+	260	15887419	frcA	Atu0065	-	ABC transporter, nucleotide binding/ATPase protein (sugar)
60	 59.21	0	69659..70288	+	209	15887420	-	Atu0066	-	putative fructose transport system kinase
61	 59.46	0	70953..71174	+	73	159184146	nrdH	Atu0068	-	glutaredoxin protein
62	 56.64	0	71188..71586	+	132	15887422	nrdI	Atu0069	-	ribonucleotide reductase stimulatory protein
63	 55.00	-1	71679..73760	+	693	159184147	nrdE	Atu0070	-	ribonucleotide-diphosphate reductase subunit alpha
64	 56.62	0	73777..74751	+	324	159184148	nrdF	Atu0071	-	ribonucleotide-diphosphate reductase subunit beta
65	 58.01	0	74781..76016	-	411	15887425	-	Atu0072	-	hypothetical protein
66	 61.52	0	76045..77172	+	375	159184149	-	Atu0073	-	recombination protein F
67	 60.63	0	77195..77956	+	253	159184150	moeB	Atu0074	-	molybdopterin biosynthesis protein MoeB
68	 57.65	0	77960..78436	+	158	15887428	-	Atu0075	-	hypothetical protein
69	 58.70	0	78443..79132	-	229	15887429	-	Atu0076	-	hypothetical protein
70	 61.49	0	79181..80185	-	334	15887430	-	Atu0077	-	D-isomer specific 2-hydroxyacid dehydrogenases family protein
71	 62.04	0	80360..80899	+	179	159184151	-	Atu0078	-	hypothetical protein
72	 59.42	0	80892..81884	-	330	15887433	-	Atu0079	-	carbohydrate kinase
73	 61.27	0	82362..83306	+	314	15887435	-	Atu0080	-	permease
74	 61.36	0	83313..84329	-	338	159184152	rsmC	Atu0081	-	ribosomal RNA small subunit methyltransferase
75	 59.71	0	84465..86606	-	713	15887437	pnpA	Atu0082	-	polynucleotide phosphorylase/polyadenylase
76	 57.04	0	86872..87141	-	89	15887438	rpsO	Atu0084	-	30S ribosomal protein S15
77	 61.29	0	87307..88254	-	315	15887439	truB	Atu0085	-	tRNA pseudouridine synthase B
78	 58.51	0	88258..88674	-	138	15887440	rbfA	Atu0086	-	ribosome-binding factor A
79	 63.24	+1	88750..91491	-	913	15887441	infB	Atu0087	-	translation initiation factor IF-2
80	 63.25	+1	91594..92295	-	233	15887442	-	Atu0088	-	hypothetical protein
81	 60.17	0	92292..93908	-	538	15887443	nusA	Atu0089	-	transcription elongation factor NusA
82	 57.12	0	93972..94568	-	198	15887444	-	Atu0090	-	hypothetical protein
83	 62.10	0	94974..96485	+	503	159184153	-	Atu0091	-	MFS permease
84	 59.16	0	96508..97773	-	421	15887446	mltB	Atu0092	-	lytic murein transglycosylase
85	 61.39	0	97808..98413	-	201	15887447	recR	Atu0093	-	recombination protein RecR
86	 59.67	0	98472..99086	+	204	159184154	-	Atu0094	-	hypothetical protein
87	 57.72	0	99146..99469	-	107	15887449	-	Atu0095	-	hypothetical protein
88	 62.99	+1	99494..101368	-	624	15887450	-	Atu0096	-	DNA polymerase III subunits gamma and tau
89	 58.02	0	101634..102038	+	134	159184155	-	Atu0097	-	hypothetical protein
90	 59.61	0	102038..103000	+	320	15887452	-	Atu0098	-	mutT/nudix family protein
91	 57.29	0	103016..103879	-	287	15887453	pheA	Atu0099	-	prephenate dehydratase
92	 58.99	0	103891..104646	-	251	15887454	kdsB	Atu0100	-	3-deoxy-manno-octulosonate cytidylyltransferase
93	 57.17	0	104797..105375	+	192	15887455	cycM	Atu0101	-	cytochrome c
94	 57.02	0	105470..106195	-	241	159184156	-	Atu0102	-	exopolysaccharide production protein
95	 62.22	0	106484..108778	-	764	15887457	pbpC	Atu0103	-	penicillin-binding protein
96	 57.30	0	108895..109353	-	152	15887458	-	Atu0104	-	hypothetical protein
97	 49.74	-2	109363..109557	-	64	159184157	-	Atu0105	-	hypothetical protein
98	 59.05	0	109823..110032	+	69	159184158	cspA	Atu0106	-	cold shock protein
99	 47.53	-2	110062..110223	+	53	159184159	-	Atu0107	-	hypothetical protein
100	 60.85	0	110444..111835	-	463	159184160	-	Atu0108	-	hypothetical protein
59.52	MEAN

3.25	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.