IslandPath Analysis: Streptococcus pneumoniae G54



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 39.82   STD DEV: 4.59
Streptococcus pneumoniae G54, complete genome - 1..2078953
2115 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 36.20	0	197..1558	+	453	194398133	dnaA	SPG_0001	-	chromosomal replication initiator protein DnaA
2	 34.39	-1	1717..2853	+	378	194397554	dnaN	SPG_0002	-	DNA polymerase III beta subunit
3	 33.85	-1	2918..3112	+	64	194396943	-	SPG_0003	-	hypothetical protein
4	 40.05	0	3196..4311	+	371	194398291	-	SPG_0004	-	GTP-binding protein
5	 33.68	-1	4382..4951	+	189	194397946	pth	SPG_0005	-	peptidyl-tRNA hydrolase
6	 35.16	-1	4952..8461	+	1169	194397105	mfd	SPG_0006	-	transcription-repair coupling factor
7	 35.21	-1	8519..8785	+	88	194396770	-	SPG_0007	-	S4 domain
8	 34.69	-1	8778..9146	+	122	194398092	-	SPG_0008	-	septum formation initiator, putative
9	 30.89	-1	9151..9273	+	40	194397494	-	SPG_0009	-	hypothetical protein
10	 32.78	-1	9266..10534	+	422	194396993	-	SPG_0010	-	hypothetical protein
11	 33.96	-1	10531..11808	+	425	194398531	tilS	SPG_0011	-	tRNA(Ile)-lysidine synthase
12	 33.33	-1	11812..12354	+	180	194397408	hpt	SPG_0012	-	hypoxanthine-guanine phosphoribosyltransferase
13	 39.20	0	12370..14328	+	652	194396790	-	SPG_0013	-	cell division protein FtsH
14	 37.50	0	14450..14929	+	159	194396660	-	SPG_0014	-	transcriptional regulator ComX1
15	 35.53	0	20407..20724	-	105	194398170	-	SPG_0021	-	IS1167 transposase
16	 38.19	0	20757..20900	-	47	194397264	-	SPG_0022	-	IS1167 transposase
17	 36.71	0	20948..21154	-	68	194397472	-	SPG_0023	-	IS1167 transposase
18	 30.38	-2	21470..21706	+	78	194396996	-	SPG_0024	-	hypothetical protein
19	 40.63	0	21895..23223	+	442	194397970	purA	SPG_0025	-	adenylosuccinate synthetase
20	 46.11	+1	23424..23744	+	106	194398441	-	SPG_0026	-	Cytosine/adenosine deaminase
21	 45.30	+1	23710..23826	+	38	194396984	-	SPG_0027	-	Cytosine/adenosine deaminase
22	 43.92	0	24077..24520	+	147	194397504	dut	SPG_0028	-	deoxyuridine 5'-triphosphate nucleotidohydrolase
23	 41.94	0	24480..25037	+	185	194398233	-	SPG_0029	-	phosphoglycerate mutase family protein
24	 47.59	+1	25150..26412	+	420	194397801	radA	SPG_0030	-	DNA repair protein RadA
25	 43.57	0	26485..26982	+	165	194398261	-	SPG_0031	-	hypothetical protein
26	 37.10	0	27007..27537	+	176	194396909	-	SPG_0032	-	hypothetical protein
27	 39.39	0	27530..27661	+	43	194397367	-	SPG_0033	-	hypothetical protein
28	 41.90	0	27806..28774	+	322	194398096	prs1	SPG_0034	-	ribose-phosphate pyrophosphokinase 1
29	 44.87	+1	29315..29548	-	77	194397482	-	SPG_0035	-	hypothetical protein
30	 48.72	+1	29541..29657	-	38	194398208	-	SPG_0036	-	hypothetical protein
31	 39.05	0	29872..30186	-	104	194398646	-	SPG_0037	-	hypothetical protein
32	 43.89	0	30478..33111	+	877	194397391	polA	SPG_0038	-	DNA polymerase I
33	 44.52	+1	33196..33633	+	145	194397723	-	SPG_0039	-	hypothetical protein
34	 46.09	+1	33816..34826	-	336	194398373	-	SPG_0040	-	hypothetical protein
35	 45.81	+1	34975..36144	+	389	194397097	-	SPG_0041	-	aromatic amino acid aminotransferase
36	 41.50	0	36141..36911	+	256	194397697	recO	SPG_0042	-	DNA repair protein RecO
37	 47.63	+1	36908..37900	+	330	194398054	-	SPG_0043	-	fatty acid/phospholipid synthesis protein PlsX
38	 38.89	0	37906..38139	+	77	194396801	-	SPG_0044	-	acyl carrier protein
39	 38.10	0	38182..38475	+	97	194397052	-	SPG_0045	-	transposase
40	 46.32	+1	38678..38908	+	76	194398595	-	SPG_0046	-	hypothetical protein
41	 22.22	-2	38911..39036	+	41	194397990	-	SPG_0047	-	hypothetical protein
42	 44.57	+1	39623..41776	+	717	194397308	comA	SPG_0048	-	transport/processing ATP-binding protein ComA
43	 44.44	+1	41789..43138	+	449	194398598	comB	SPG_0049	-	competence factor transport protein ComB
44	 40.11	0	43308..44015	+	235	194398384	purC	SPG_0050	-	phosphoribosylaminoimidazole-succinocarboxamide synthase
45	 45.71	+1	44072..47797	+	1241	194397931	purL	SPG_0051	-	phosphoribosylformylglycinamide synthetase
46	 46.36	+1	47890..49332	+	480	194397123	purF	SPG_0052	-	amidophosphoribosyltransferase
47	 47.12	+1	49369..50391	+	340	194398379	purM	SPG_0053	-	phosphoribosylformylglycinamidine cyclo-ligase
48	 46.89	+1	50388..50933	+	181	194398070	purN	SPG_0054	-	phosphoribosylglycinamide formyltransferase
49	 29.41	-2	51017..51526	+	169	194396879	-	SPG_0055	-	hypothetical protein
50	 47.09	+1	51551..53098	+	515	194396916	purH	SPG_0056	-	bifunctional purine biosynthesis protein
51	 47.66	+1	53220..54482	+	420	194398590	purD	SPG_0057	-	phosphoribosylamine--glycine ligase
52	 50.31	+2	54885..55373	+	162	194398140	purE	SPG_0058	-	phosphoribosylaminoimidazole carboxylase catalytic subunit
53	 47.62	+1	55360..56451	+	363	194397662	purK	SPG_0059	-	phosphoribosylaminoimidazole carboxylase, ATPase subunit
54	 35.96	0	56461..56688	+	75	194396905	-	SPG_0060	-	hypothetical protein
55	 46.50	+1	56751..58049	+	432	194398324	purB	SPG_0061	-	adenylosuccinate lyase
56	 42.27	0	58104..62042	-	1312	194398622	-	SPG_0062	-	beta-N-acetylhexosaminidase
57	 37.23	0	62357..63100	-	247	194397376	-	SPG_0063	-	transcriptional regulator, GntR family
58	 42.06	0	63421..65208	+	595	194397614	-	SPG_0064	-	Beta-galactosidase
59	 41.30	0	65205..65681	+	158	194398074	-	SPG_0065	-	PTS system, IIB component
60	 44.26	0	65709..66614	+	301	194398754	-	SPG_0066	-	PTS system, IIC component
61	 40.44	0	66601..67416	+	271	194397103	-	SPG_0067	-	PTS system, IID component
62	 43.70	0	67423..67827	+	134	194397885	-	SPG_0068	-	PTS system, IIA component
63	 41.73	0	68126..69292	+	388	194396654	-	SPG_0069	-	putative sugar isomerase, AgaS family
64	 45.38	+1	69408..70445	+	345	194397234	-	SPG_0070	-	aldose-1-epimerase
65	 40.55	0	70607..71119	+	170	194397832	-	SPG_0071	-	hypothetical protein
66	 42.14	0	71140..71775	+	211	194398738	cbpI	SPG_0072	-	choline binding protein I
67	 37.61	0	71778..71894	-	38	194398709	-	SPG_0073	-	hypothetical protein
68	 36.85	0	72227..77797	+	1856	194396933	zmpC	SPG_0074	-	zinc metalloprotease ZmpC
69	 35.96	0	77900..78013	+	37	194396979	-	SPG_0075	-	hypothetical protein
70	 44.80	+1	78153..79007	+	284	194398408	-	SPG_0076	-	hypothetical protein
71	 46.24	+1	79113..79670	+	185	194398236	-	SPG_0077	-	acetyltransferase
72	 48.37	+1	79887..80651	+	254	194397470	-	SPG_0078	-	Phosphorylase, Pnp/Udp family protein, putative
73	 41.38	0	81264..82643	+	459	194397672	-	SPG_0079	-	potassium uptake protein, Trk family protein
74	 43.69	0	82657..83322	+	221	194397069	-	SPG_0080	-	Trk transporter NAD+ binding protein
75	 44.83	+1	83677..83850	+	57	194396713	-	SPG_0081	-	glycosyl transferase, family 2, truncation
76	 42.34	0	83917..84327	+	136	194398490	-	SPG_0082	-	glycosyl transferase, family 2
77	 41.94	0	84443..86104	+	553	194397775	-	SPG_0083	-	cell wall surface anchor family protein
78	 41.92	0	86271..86969	+	232	194397353	-	SPG_0084	-	response regulator TCS08
79	 43.97	0	86966..88018	+	350	194396888	-	SPG_0085	-	histidine kinase TCS08
80	 43.46	0	88213..88824	+	203	194398306	rpsD	SPG_0086	-	30S ribosomal protein S4
81	 42.91	0	89564..89824	+	86	194397289	-	SPG_0087	-	hypothetical protein
82	 35.14	-1	89778..89999	+	73	194397277	-	SPG_0088	-	hypothetical protein
83	 41.29	0	90318..91247	+	309	194396701	-	SPG_0089	-	ABC transporter, permease protein
84	 42.21	0	91261..92184	+	307	194398505	-	SPG_0090	-	ABC transporter, permease protein
85	 38.35	0	92394..93869	+	491	194397543	-	SPG_0091	-	ABC transporter, substrate-binding protein
86	 44.38	0	94141..95127	+	328	194398717	-	SPG_0092	-	hypothetical protein
87	 41.81	0	95249..96109	+	286	194398179	-	SPG_0093	-	hypothetical protein
88	 40.00	0	96181..97245	-	354	194397510	-	SPG_0094	-	hypothetical protein
89	 41.01	0	97308..98219	-	303	194397864	-	SPG_0095	-	hypothetical protein
90	 44.11	0	98212..98805	-	197	194398303	-	SPG_0096	-	hypothetical protein
91	 42.20	0	98792..99118	-	108	194396874	-	SPG_0097	-	transcriptional regulator, PadR family
92	 44.73	+1	99257..100423	-	388	194396777	-	SPG_0098	-	transporter, putative
93	 32.86	-1	100574..101638	+	354	194397410	-	SPG_0099	-	glycosyl transferase
94	 42.46	0	101680..103530	+	616	194398751	-	SPG_0100	-	capsular polysaccharide biosynthesis protein
95	 42.97	0	103925..104557	-	210	194397982	-	SPG_0101	-	hydrolase, haloacid dehalogenase-like family protein
96	 47.88	+1	104579..105451	-	290	194398391	sdhA	SPG_0102	-	L-serine dehydratase, iron-sulfur-dependent, alpha subunit
97	 41.67	0	105460..106131	-	223	194397086	sdhB	SPG_0103	-	L-serine dehydratase, iron-sulfur-dependent, beta subunit
98	 41.84	0	106372..106959	+	195	194398499	-	SPG_0104	-	LysM domain protein
99	 37.70	0	108094..110202	+	702	194398015	-	SPG_0105	-	ABC transporter membrane-spanning permease
100	 41.28	0	110199..110840	+	213	194397690	-	SPG_0106	-	ABC transporter, ATP-binding protein
39.82	MEAN

4.59	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.