IslandPath Analysis: Salmonella typhimurium LT2



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 52.44   STD DEV: 5.35
Salmonella typhimurium LT2, complete genome - 1..4857432
4423 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 54.55	0	190..255	+	21	16763391	thrL	STM0001	-	thr operon leader peptide
2	 55.95	0	337..2799	+	820	16763392	thrA	STM0002	-	bifunctional aspartokinase I/homeserine dehydrogenase I
3	 57.96	+1	2801..3730	+	309	16763393	thrB	STM0003	-	homoserine kinase
4	 56.80	0	3734..5020	+	428	16763394	thrC	STM0004	-	threonine synthase
5	 50.65	0	5114..5887	-	257	16763395	yaaA	STM0005	-	hypothetical protein
6	 55.84	0	5966..7396	-	476	16763396	yaaJ	STM0006	-	putative alanine/glycine transport protein
7	 53.98	0	7665..8618	+	317	16763397	talB	STM0007	-	transaldolase B
8	 56.18	0	8729..9319	+	196	16763398	mogA	STM0008	-	molybdenum cofactor biosynthesis protein
9	 54.14	0	9376..9942	-	188	16763399	yaaH	STM0009	-	hypothetical protein
10	 54.34	0	10092..10805	-	237	16763400	htgA	STM0010	-	hypothetical protein
11	 49.63	0	10841..11245	-	134	16763401	yaaI	STM0011	-	hypothetical protein
12	 52.58	0	11593..13509	+	638	16763402	dnaK	STM0012	-	molecular chaperone DnaK
13	 54.04	0	13595..14734	+	379	16763403	dnaJ	STM0013	-	chaperone protein DnaJ
14	 40.61	-2	15014..15961	+	315	16763404	-	STM0014	-	putative transcriptional regulator
15	 40.58	-2	16088..16432	+	114	16763405	-	STM0015	-	putative bacteriophage protein
16	 51.12	0	16493..17026	-	177	16763406	-	STM0016	-	hypothetical protein
17	 38.29	-2	17043..17486	-	147	16763407	-	STM0017	-	hypothetical protein
18	 51.10	0	17867..19966	+	699	16763408	-	STM0018	-	putative exochitinase
19	 54.85	0	20058..23054	+	998	16763409	-	STM0019	-	putative hydroxymethyltransferase
20	 46.95	-1	23335..24039	+	234	16763410	-	STM0020	-	putative cytoplasmic protein
21	 51.75	0	24469..25011	+	180	16763411	bcfA	STM0021	-	fimbrial subunit
22	 50.95	0	25112..25798	+	228	16763412	bcfB	STM0022	-	fimbrial chaparone
23	 54.46	0	25803..28424	+	873	16763413	bcfC	STM0023	-	fimbrial usher
24	 50.10	0	28425..29432	+	335	16763414	bcfD	STM0024	-	fimbrial subunit
25	 49.45	0	29433..29978	+	181	16763415	bcfE	STM0025	-	fimbrial subunit
26	 55.68	0	29994..30512	+	172	16763416	bcfF	STM0026	-	fimbrial subunit
27	 53.96	0	30478..31209	+	243	16763417	bcfG	STM0027	-	fimbrial chaparone
28	 54.96	0	31274..32119	+	281	16763418	bcfH	STM0028	-	putative thiol-disulfide isomerase
29	 41.82	-1	32116..32445	+	109	39546288	-	STM0028.1n	-	hypothetical protein
30	 37.11	-2	32545..32994	-	149	16763419	-	STM0029	-	putative transcriptional regulator
31	 38.81	-2	33364..34368	+	334	16763420	-	STM0030	-	putative transcriptional regulator
32	 35.83	-2	34376..34816	-	146	16763421	-	STM0031	-	putative transcriptional regulator
33	 46.31	-1	35339..37057	+	572	16763422	-	STM0032	-	putative arylsulfatase
34	 46.82	-1	37103..38674	-	523	16763423	-	STM0033	-	putative 5'-nucleotidase
35	 44.23	-1	38773..39534	-	253	16763424	-	STM0034	-	putative outer membrane/exported protein
36	 52.41	0	40131..41624	+	497	16763425	-	STM0035	-	putative arylsulfatase
37	 49.71	0	41723..42913	+	396	16763426	-	STM0036	-	putative arylsulfatase regulator
38	 49.92	0	42932..44185	+	417	16763427	-	STM0037	-	putative cytoplasmic protein
39	 49.71	0	44312..46027	+	571	16763428	-	STM0038	-	putative arylsulfatase
40	 56.38	0	46190..47356	+	388	16763429	nhaA	STM0039	-	pH-dependent sodium/proton antiporter
41	 50.56	0	47418..48317	+	299	16763430	nhaR	STM0040	-	transcriptional activator NhaR
42	 54.61	0	48372..50411	-	679	16763431	-	STM0041	-	putative glycosyl hydrolase
43	 49.05	0	50451..51824	-	457	16763432	-	STM0042	-	putative sodium galactoside symporter
44	 46.59	-1	52280..52543	-	87	16763433	rpsT	STM0043	-	30S ribosomal protein S20
45	 47.69	0	52649..52864	+	71	16763434	yaaY	STM0044	-	putative cytoplasmic protein
46	 56.76	0	52872..53810	+	312	16763435	ribF	STM0045	-	bifunctional riboflavin kinase/FMN adenylyltransferase
47	 54.78	0	53855..56689	+	944	16763436	ileS	STM0046	-	isoleucyl-tRNA synthetase
48	 52.89	0	56689..57189	+	166	16763437	lspA	STM0047	-	lipoprotein signal peptidase
49	 54.67	0	57344..57793	+	149	16763438	slpA	STM0048	-	FKBP-type peptidyl-prolyl cis-trans isomerase
50	 57.41	0	57796..58746	+	316	16763439	ispH	STM0049	-	4-hydroxy-3-methylbut-2-enyl diphosphate reductase
51	 48.21	0	58946..60148	+	400	16763440	-	STM0050	-	putative nitrite reductase
52	 56.57	0	60164..61084	+	306	16763441	rihC	STM0051	-	ribonucleoside hydrolase RihC
53	 48.62	0	61106..61792	-	228	16763442	-	STM0052	-	putative transcriptional regulator
54	 48.02	0	61794..63413	-	539	16763443	-	STM0053	-	putative transcriptional regulator
55	 63.98	+2	63548..64849	-	433	16763444	-	STM0054	-	putative oxalacetate decarboxylase subunit beta
56	 63.68	+2	64862..66637	-	591	16763445	-	STM0055	-	pyruvate carboxylase subunit B
57	 57.50	0	66654..66893	-	79	16763446	-	STM0056	-	oxaloacetate decarboxylase subunit gamma
58	 49.37	0	67052..68392	-	446	16763447	-	STM0057	-	putative citrate-sodium symporter
59	 53.74	0	68637..69680	+	347	16763448	citC2	STM0058	-	putative citrate lyase synthetase
60	 57.14	0	69710..70003	+	97	16763449	citD2	STM0059	-	citrate lyase subunit gamma
61	 55.63	0	70000..70869	+	289	16763450	citE2	STM0060	-	putative citrate lyase beta chain
62	 55.23	0	70880..72400	+	506	16763451	citF2	STM0061	-	putative citrate lyase alpha chain/citrate-ACP transferase
63	 55.98	0	72400..72951	+	183	16763452	citX2	STM0062	-	putative cytoplasmic protein
64	 54.79	0	72929..73837	+	302	16763453	citG2	STM0063	-	triphosphoribosyl-dephospho-CoA synthase
65	 56.57	0	74017..74838	+	273	16763454	dapB	STM0064	-	dihydrodipicolinate reductase
66	 55.35	0	75880..77028	+	382	16763456	carA	STM0066	-	carbamoyl phosphate synthase small subunit
67	 59.11	+1	77047..80274	+	1075	16763457	carB	STM0067	-	carbamoyl phosphate synthase large subunit
68	 46.46	-1	80548..80943	+	131	16763458	caiF	STM0068	-	DNA-binding transcriptional activator CaiF
69	 55.95	0	81020..81616	-	198	16763459	caiE	STM0069	-	carnitine operon protein CaiE
70	 56.87	0	81725..82510	-	261	16763460	caiD	STM0070	-	carnitinyl-CoA dehydratase
71	 50.77	0	82564..84117	-	517	16763461	caiC	STM0071	-	putative crotonobetaine/carnitine-CoA ligase
72	 53.20	0	84180..85397	-	405	16763462	caiB	STM0072	-	crotonobetainyl-CoA:carnitine CoA-transferase
73	 52.58	0	85509..86651	-	380	16763463	caiA	STM0073	-	crotonobetainyl-CoA dehydrogenase
74	 54.08	0	86686..88203	-	505	16763464	caiT	STM0074	-	L-carnitine/gamma-butyrobetaine antiporter
75	 52.01	0	88684..89454	+	256	16763465	fixA	STM0075	-	putative electron transfer flavoprotein FixA
76	 58.92	+1	89470..90411	+	313	16763466	fixB	STM0076	-	putative electron transfer flavoprotein FixB
77	 55.48	0	90461..91747	+	428	16763467	fixC	STM0077	-	putative oxidoreductase FixC
78	 54.51	0	91744..92031	+	95	16763468	fixX	STM0078	-	putative ferredoxin
79	 54.14	0	92178..93518	+	446	16763469	yaaU	STM0079	-	putative transport protein
80	 48.48	0	93607..93837	+	76	16763470	-	STM0080	-	putative outer membrane lipoprotein
81	 47.00	-1	94131..94547	+	138	16763471	-	STM0081	-	putative secreted protein
82	 46.39	-1	94771..95061	-	96	16763472	-	STM0082	-	putative secreted protein
83	 46.19	-1	95959..97848	+	629	16763474	-	STM0084	-	putative sulfatase
84	 53.67	0	98255..98785	+	176	16763475	yabF	STM0085	-	glutathione-regulated potassium-efflux system ancillary protein KefF
85	 58.19	+1	98778..100640	+	620	16763476	kefC	STM0086	-	glutathione-regulated potassium-efflux system protein KefC
86	 53.75	0	100839..101318	+	159	16763477	folA	STM0087	-	dihydrofolate reductase
87	 56.30	0	101424..102272	-	282	16763478	apaH	STM0088	-	diadenosine tetraphosphatase
88	 55.03	0	102283..102660	-	125	16763479	apaG	STM0089	-	ApaG
89	 52.43	0	102663..103484	-	273	16763480	ksgA	STM0090	-	dimethyladenosine transferase
90	 58.69	+1	103481..104470	-	329	16763481	pdxA	STM0091	-	4-hydroxythreonine-4-phosphate dehydrogenase
91	 54.39	0	104470..105756	-	428	16763482	surA	STM0092	-	peptidyl-prolyl cis-trans isomerase SurA
92	 52.77	0	105810..108170	-	786	16763483	imp	STM0093	-	organic solvent tolerance protein
93	 54.12	0	108424..109236	+	270	16763484	djlA	STM0094	-	DNA-J like membrane chaperone protein
94	 57.12	0	109331..109990	-	219	16763485	rluA	STM0095	-	23S rRNA/tRNA pseudouridine synthase A
95	 57.00	0	110002..112908	-	968	16763486	hepA	STM0096	-	ATP-dependent helicase HepA
96	 56.51	0	113082..115433	-	783	16763487	polB	STM0097	-	DNA polymerase II
97	 49.44	0	115477..116097	-	206	16763488	-	STM0098	-	putative secreted protein
98	 42.62	-1	116816..117235	+	139	16763490	-	STM0100	-	putative cytoplasmic protein
99	 55.03	0	117241..117936	-	231	16763491	araD	STM0101	-	L-ribulose-5-phosphate 4-epimerase
100	 55.82	0	118077..119579	-	500	16763492	araA	STM0102	-	L-arabinose isomerase
52.44	MEAN

5.35	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.