IslandPath Analysis: Corynebacterium diphtheriae NCTC 13129



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 53.75   STD DEV: 4.64
Corynebacterium diphtheriae NCTC 13129, complete genome - 1..2488635
2272 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 53.59	0	19..1677	+	552	38232643	dnaA	DIP0001	-	chromosomal replication initiation protein
2	 57.15	0	2316..3503	+	395	161598680	dnaN	DIP0002	-	DNA polymerase III subunit beta
3	 54.27	0	3542..4735	+	397	38232645	recF	DIP0003	-	recombination protein F
4	 52.72	0	4725..5276	+	183	38232646	-	DIP0004	-	hypothetical protein
5	 56.85	0	5379..7436	+	685	38232647	gyrB	DIP0005	-	DNA gyrase subunit B
6	 55.48	0	7503..7940	-	145	38232648	-	DIP0006	-	hypothetical protein
7	 54.95	0	8201..8473	-	90	38232649	-	DIP0007	-	hypothetical protein
8	 63.73	+2	8478..8681	-	67	38232650	-	DIP0008	-	hypothetical protein
9	 61.07	+1	8792..11362	+	856	38232651	gyrA	DIP0009	-	DNA gyrase subunit A
10	 55.36	0	11362..11706	+	114	38232652	-	DIP0010	-	hypothetical protein
11	 56.79	0	12176..12904	-	242	38232653	-	DIP0011	-	putative regulatory protein
12	 58.41	+1	12992..14662	-	556	38232654	lldP	DIP0012	-	L-lactate permease
13	 57.81	0	15159..15632	+	157	38232655	-	DIP0013	-	hypothetical protein
14	 57.85	0	15721..17364	+	547	38232656	-	DIP0014	-	hypothetical protein
15	 57.19	0	17354..19000	+	548	38232657	-	DIP0015	-	putative transport system, ATP-binding protein
16	 56.70	0	19447..19767	+	106	38232658	-	DIP0016	-	hypothetical protein
17	 62.42	+1	19865..20029	+	54	38232659	-	DIP0017	-	hypothetical protein
18	 55.05	0	20524..20721	+	65	38232660	-	DIP0018	-	hypothetical protein
19	 51.63	0	20713..20958	-	81	38232661	-	DIP0019	-	hypothetical protein
20	 57.58	0	20955..21185	-	76	38232662	-	DIP0020	-	hypothetical protein
21	 55.16	0	21381..22379	+	332	38232663	-	DIP0021	-	putative solute-binding lipoprotein
22	 50.19	0	22376..23407	+	343	38232664	-	DIP0022	-	ABC transporter
23	 53.28	0	23408..24169	+	253	38232665	-	DIP0023	-	ABC transporter ATP-binding protein
24	 56.81	0	24217..24825	-	202	38232666	-	DIP0024	-	hypothetical protein
25	 54.33	0	24888..25430	+	180	38232667	ppiA	DIP0025	-	peptidyl-prolyl cis-trans isomerase A
26	 52.14	0	25519..25752	-	77	38232668	-	DIP0026	-	putative transposase (partial)
27	 52.10	0	25877..26494	+	205	38232669	-	DIP0027	-	hypothetical protein
28	 45.20	-1	26672..27025	-	117	38232670	-	DIP0028	-	hypothetical protein
29	 55.28	0	27567..29366	+	599	38232671	thiC	DIP0029	-	thiamine biosynthesis protein ThiC
30	 59.04	+1	29350..30018	+	222	38232672	thiE	DIP0030	-	thiamine-phosphate pyrophosphorylase
31	 58.77	+1	30015..31103	+	362	38232673	thiO	DIP0031	-	putative thiamine biosynthesis oxidoreductase
32	 56.22	0	31087..31287	+	66	38232674	-	DIP0032	-	hypothetical protein
33	 63.87	+2	31289..32074	+	261	38232675	thiG	DIP0033	-	thiazole synthase
34	 58.58	+1	32071..33084	+	337	38232676	-	DIP0034	-	thiamine biosynthesis protein ThiF
35	 60.20	+1	33081..33899	+	272	38232677	thiD	DIP0035	-	phosphomethylpyrimidine kinase
36	 47.90	-1	34478..37732	+	1084	38232678	-	DIP0036	-	hypothetical protein
37	 48.52	-1	37736..38650	+	304	38232679	-	DIP0037	-	hypothetical protein
38	 44.85	-1	38634..38963	+	109	38232680	-	DIP0038	-	hypothetical protein
39	 41.44	-2	38967..39077	-	36	38232681	-	DIP0039	-	hypothetical protein
40	 50.71	0	39311..39592	-	93	38232682	-	DIP0040	-	hypothetical protein
41	 45.10	-1	40822..40923	-	33	38232683	-	DIP0046	-	hypothetical protein
42	 55.71	0	41066..42614	-	508	38232684	-	DIP0047	-	putative transposase
43	 49.15	0	42736..42969	+	77	38232685	-	DIP0049	-	putative transposase (partial)
44	 51.04	0	43101..43196	+	31	38232686	-	DIP0050	-	hypothetical protein
45	 45.83	-1	43189..43284	+	31	38232687	-	DIP0051	-	hypothetical protein
46	 54.44	0	43308..43577	-	89	38232688	-	DIP0052	-	putative septation inhibitor protein
47	 58.31	0	43694..45715	-	673	38232689	pknB	DIP0053	-	serine/threonine-protein kinase
48	 60.96	+1	45712..47217	-	501	38232690	pknA	DIP0054	-	serine/threonine-protein kinase
49	 58.93	+1	47230..48690	-	486	38232691	pbpA	DIP0055	-	putative secreted penicillin-binding protein
50	 58.89	+1	48687..50036	-	449	38232692	ftsW	DIP0056	-	cell division protein
51	 58.57	+1	50037..51494	-	485	38232693	-	DIP0057	-	putative phosphoprotein phosphatase
52	 52.35	0	51491..51979	-	162	38232694	-	DIP0058	-	hypothetical protein
53	 53.63	0	51993..52859	-	288	38232695	-	DIP0059	-	hypothetical protein
54	 66.58	+2	53813..56047	-	744	38232696	-	DIP0061	-	putative cation-transporting ATPase
55	 64.83	+2	56099..56425	-	108	38232697	-	DIP0062	-	putative heavy metal-associated transport protein
56	 65.87	+2	56540..57667	-	375	38232698	-	DIP0063	-	putative two-component system sensor protein
57	 66.25	+2	57664..58386	-	240	38232699	-	DIP0064	-	putative two-component system response regulator
58	 60.38	+1	58730..59365	+	211	38232700	-	DIP0066	-	hypothetical protein
59	 64.17	+2	59436..60917	+	493	38232701	-	DIP0067	-	putative exported multicopper oxidase
60	 59.87	+1	60895..61203	-	102	38232702	-	DIP0068	-	hypothetical protein
61	 50.00	0	62898..63353	-	151	38232703	-	DIP0071	-	hypothetical protein
62	 46.71	-1	63350..63850	-	166	38232704	-	DIP0072	-	hypothetical protein
63	 46.21	-1	63823..64218	-	131	38232705	-	DIP0073	-	hypothetical protein
64	 43.26	-2	64253..64393	-	46	38232706	-	DIP0074	-	hypothetical protein
65	 58.37	0	64602..66083	+	493	38232707	-	DIP0075	-	hypothetical protein
66	 56.18	0	66426..66797	+	123	38232708	-	DIP0076	-	hypothetical protein
67	 55.18	0	66921..67721	+	266	38232709	-	DIP0077	-	hypothetical protein
68	 57.18	0	67740..68582	+	280	38232710	-	DIP0078	-	hypothetical protein
69	 55.37	0	68563..69828	+	421	38232711	-	DIP0079	-	hypothetical protein
70	 47.73	-1	69994..70125	+	43	38232712	-	DIP0080	-	hypothetical protein
71	 52.22	0	70294..70473	+	59	38232713	-	DIP0081	-	hypothetical protein
72	 45.77	-1	70504..70929	+	141	38232714	-	DIP0082	-	hypothetical protein
73	 48.23	-1	70997..71137	+	46	38232715	-	DIP0083	-	hypothetical protein
74	 44.96	-1	71572..71700	+	42	38232716	-	DIP0084	-	hypothetical protein
75	 46.90	-1	71845..72360	-	171	38232717	-	DIP0085	-	hypothetical protein
76	 49.33	0	72365..72664	-	99	38232718	-	DIP0086	-	putative regulatory protein
77	 59.95	+1	73648..74943	-	431	38232719	-	DIP0089	-	hypothetical protein
78	 56.27	0	75080..75781	-	233	38232720	-	DIP0090	-	ABC transport system ATP-binding protein
79	 58.03	0	75820..76479	-	219	38232721	-	DIP0091	-	putative two-component system response regulator
80	 55.85	0	76479..77708	-	409	38232722	-	DIP0092	-	putative two component system sensor kinase
81	 55.56	0	77804..78145	-	113	38232723	-	DIP0093	-	hypothetical protein
82	 47.86	-1	78214..78330	-	38	38232724	-	DIP0094	-	hypothetical protein
83	 60.15	+1	78414..79088	-	224	38232725	opuBB	DIP0095	-	choline transport system permease protein
84	 60.75	+1	79095..79736	-	213	38232726	opuBD	DIP0096	-	choline transport system permease protein
85	 58.36	0	79727..80557	-	276	38232727	opuBA	DIP0097	-	choline transport system ATP-binding protein
86	 57.14	0	80567..81175	-	202	38232728	-	DIP0098	-	hypothetical protein
87	 55.56	0	81172..81756	-	194	38232729	-	DIP0099	-	putative RNA polymerase sigma factor
88	 51.63	0	81783..82181	-	132	38232730	-	DIP0100	-	hypothetical protein
89	 56.55	0	82259..83899	+	546	38232731	-	DIP0101	-	hypothetical protein
90	 55.34	0	83969..84745	-	258	38232732	tipA	DIP0102	-	transcriptional activator
91	 48.21	-1	84797..84964	-	55	38232733	-	DIP0103	-	hypothetical protein
92	 62.66	+1	84975..86321	-	448	38232734	-	DIP0104	-	putative peptidase
93	 57.93	0	86342..87394	+	350	38232735	bioB	DIP0105	-	biotin synthase
94	 62.84	+1	87394..87654	+	86	38232736	-	DIP0106	-	hypothetical protein
95	 52.78	0	88041..89228	+	395	38232737	irp6A	DIP0108	-	ferrisiderophore receptor Irp6A
96	 58.91	+1	89229..90272	+	347	38232738	irp6B	DIP0109	-	membrane protein permease Irp6B
97	 58.63	+1	90274..91032	+	252	38232739	irp6C	DIP0110	-	ATP-binding protein Irp6C
98	 57.00	0	91122..92600	+	492	38232740	-	DIP0111	-	putative lipoprotein
99	 52.70	0	92618..93025	+	135	38232741	-	DIP0112	-	hypothetical protein
100	 61.97	+1	93040..94380	+	446	38232742	-	DIP0113	-	putative riboflavin biosynthesis protein
53.75	MEAN

4.64	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.