IslandPath Analysis: Pseudomonas putida F1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 61.99   STD DEV: 3.83
Pseudomonas putida F1, complete genome - 1..5959964
5252 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 58.56	0	385..1902	+	505	148545260	dnaA	Pput_0001	-	chromosomal replication initiation protein
2	 58.51	0	1943..3046	+	367	148545261	-	Pput_0002	-	DNA polymerase III subunit beta
3	 58.51	0	3062..4165	+	367	148545262	recF	Pput_0003	-	recombination protein F
4	 57.21	-1	4170..6590	+	806	148545263	gyrB	Pput_0004	-	DNA gyrase subunit B
5	 55.71	-1	7427..8065	+	212	148545264	-	Pput_0005	-	hypothetical protein
6	 53.50	-2	8046..10004	+	652	148545265	-	Pput_0006	-	integrase catalytic subunit
7	 52.40	-2	10001..10960	+	319	148545266	-	Pput_0007	-	AAA ATPase
8	 54.98	-1	11036..12952	+	638	148545267	-	Pput_0008	-	hypothetical protein
9	 54.44	-1	13009..13368	+	119	148545268	-	Pput_0009	-	hypothetical protein
10	 47.75	-2	13740..14072	+	110	148545269	-	Pput_0010	-	hypothetical protein
11	 56.80	-1	14170..14625	-	151	148545270	-	Pput_0011	-	hypothetical protein
12	 55.13	-1	14615..15394	-	259	148545271	-	Pput_0012	-	hypothetical protein
13	 58.51	0	15404..16519	-	371	148545272	-	Pput_0013	-	copper resistance B precursor
14	 52.92	-2	16509..16850	-	113	148545273	-	Pput_0014	-	hypothetical protein
15	 57.94	-1	16847..18862	-	671	148545274	-	Pput_0015	-	CopA family copper resistance protein
16	 57.97	-1	18988..19194	-	68	148545275	-	Pput_0016	-	hypothetical protein
17	 56.19	-1	19361..20038	+	225	148545276	-	Pput_0017	-	two component heavy metal response transcriptional regulator
18	 55.72	-1	20038..21444	+	468	148545277	-	Pput_0018	-	heavy metal sensor signal transduction histidine kinase
19	 57.18	-1	21481..21828	+	115	148545278	-	Pput_0019	-	hypothetical protein
20	 59.09	0	21915..23168	+	417	148545279	-	Pput_0020	-	outer membrane efflux protein
21	 59.78	0	23165..24631	+	488	148545280	-	Pput_0021	-	RND family efflux transporter MFP subunit
22	 58.31	0	24628..27786	+	1052	148545281	-	Pput_0022	-	CzcA family heavy metal efflux protein
23	 56.61	-1	27783..28130	+	115	148545282	-	Pput_0023	-	hypothetical protein
24	 55.61	-1	28545..29204	-	219	148545283	-	Pput_0025	-	S-isoprenylcysteine methyltransferase-like protein
25	 56.16	-1	29201..29476	-	91	148545284	-	Pput_0026	-	hypothetical protein
26	 57.02	-1	29502..29957	-	151	148545285	-	Pput_0027	-	hypothetical protein
27	 59.04	0	30096..31118	-	340	148545286	-	Pput_0028	-	YVTN beta-propeller repeat-containing protein
28	 55.22	-1	31384..31584	-	66	148545287	-	Pput_0029	-	heavy metal transport/detoxification protein
29	 60.94	0	31922..34297	-	791	148545288	-	Pput_0030	-	copper-translocating P-type ATPase
30	 52.83	-2	34482..34640	-	52	148545289	-	Pput_0031	-	hypothetical protein
31	 54.11	-2	35432..36466	+	344	148545290	-	Pput_0033	-	hypothetical protein
32	 52.46	-2	36650..37015	-	121	148545291	-	Pput_0034	-	hypothetical protein
33	 54.62	-1	37298..37546	+	82	148545292	-	Pput_0035	-	hypothetical protein
34	 53.25	-2	37857..38780	+	307	148545293	-	Pput_0036	-	hypothetical protein
35	 52.89	-2	38986..39210	+	74	148545294	-	Pput_0037	-	hypothetical protein
36	 54.59	-1	39225..39431	+	68	148545295	-	Pput_0038	-	hypothetical protein
37	 55.18	-1	39826..41523	-	565	148545296	-	Pput_0039	-	hypothetical protein
38	 58.06	-1	42407..43312	+	301	148545297	-	Pput_0040	-	cation diffusion facilitator family transporter
39	 54.42	-1	43470..43820	+	116	148545298	-	Pput_0041	-	hypothetical protein
40	 48.32	-2	43853..44179	-	108	148545299	-	Pput_0042	-	hypothetical protein
41	 54.81	-1	44869..45543	+	224	148545300	-	Pput_0043	-	two component heavy metal response transcriptional regulator
42	 56.94	-1	45540..46958	+	472	148545301	-	Pput_0044	-	heavy metal sensor signal transduction histidine kinase
43	 58.67	0	47016..47603	-	195	148545302	-	Pput_0045	-	hypothetical protein
44	 48.65	-2	47870..48091	+	73	148545303	-	Pput_0046	-	hypothetical protein
45	 58.42	0	48174..49628	-	484	148545304	-	Pput_0047	-	glycosyl transferase family protein
46	 57.32	-1	49622..50605	-	327	148545305	-	Pput_0048	-	ribonuclease III
47	 49.52	-2	50571..50990	-	139	148545306	-	Pput_0049	-	GtrA family protein
48	 51.70	-2	51248..52216	+	322	148545307	-	Pput_0050	-	LysR family transcriptional regulator
49	 57.72	-1	52427..53734	+	435	148545308	-	Pput_0051	-	phosphate-selective porin O and P
50	 56.30	-1	53754..53888	+	44	148545309	-	Pput_0052	-	hypothetical protein
51	 57.70	-1	54033..55058	+	341	148545310	-	Pput_0053	-	hypothetical protein
52	 55.11	-1	55186..55410	+	74	148545311	-	Pput_0054	-	hypothetical protein
53	 58.56	0	55503..57500	-	665	148545312	-	Pput_0055	-	heavy metal translocating P-type ATPase
54	 49.69	-2	57703..58026	-	107	148545313	-	Pput_0056	-	hypothetical protein
55	 58.00	-1	58189..61350	-	1053	148545314	-	Pput_0057	-	CzcA family heavy metal efflux protein
56	 60.03	0	61375..62625	-	416	148545315	-	Pput_0058	-	RND family efflux transporter MFP subunit
57	 60.25	0	62694..63878	-	394	148545316	-	Pput_0059	-	outer membrane efflux protein
58	 56.10	-1	64369..65712	+	447	148545317	-	Pput_0060	-	outer membrane porin
59	 51.70	-2	66201..66875	+	224	148545318	-	Pput_0061	-	two component heavy metal response transcriptional regulator
60	 48.46	-2	66993..67316	+	107	148545319	-	Pput_0062	-	hypothetical protein
61	 45.75	-2	67418..68029	-	203	148545320	-	Pput_0063	-	hypothetical protein
62	 54.19	-2	68135..69601	-	488	148545321	-	Pput_0064	-	hypothetical protein
63	 51.56	-2	69614..70063	-	149	148545322	-	Pput_0065	-	hypothetical protein
64	 59.07	0	70754..71161	-	135	148545323	-	Pput_0066	-	hypothetical protein
65	 61.79	0	71293..72585	-	430	148545324	-	Pput_0067	-	sigma-54 dependent trancsriptional regulator
66	 59.77	0	72808..73692	+	294	148545325	-	Pput_0068	-	beta-lactamase domain-containing protein
67	 63.04	0	73733..75001	+	422	148545326	-	Pput_0069	-	FAD-dependent pyridine nucleotide-disulphide oxidoreductase
68	 64.71	0	74998..75816	+	272	148545327	-	Pput_0070	-	hypothetical protein
69	 63.74	0	75805..76692	-	295	148545328	-	Pput_0071	-	LysR family transcriptional regulator
70	 61.93	0	76927..78573	+	548	148545329	-	Pput_0072	-	glucose-methanol-choline oxidoreductase
71	 59.51	0	78671..80290	+	539	148545330	-	Pput_0073	-	general substrate transporter
72	 60.56	0	80465..81250	-	261	148545331	-	Pput_0074	-	phospholipid/glycerol acyltransferase
73	 62.88	0	81297..81824	-	175	148545332	-	Pput_0075	-	D,D-heptose 1,7-bisphosphate phosphatase
74	 64.14	0	81828..83882	-	684	148545333	glyS	Pput_0076	-	glycyl-tRNA synthetase subunit beta
75	 60.44	0	83879..84826	-	315	148545334	glyQ	Pput_0077	-	glycyl-tRNA synthetase subunit alpha
76	 60.69	0	84910..85461	+	183	148545335	-	Pput_0078	-	DNA-3-methyladenine glycosylase I
77	 62.73	0	85503..86390	+	295	148545336	-	Pput_0079	-	lipid A biosynthesis lauroyl acyltransferase
78	 60.63	0	86488..86802	-	104	148545337	-	Pput_0080	-	TPR repeat-containing protein
79	 61.64	0	86814..88187	-	457	148545338	trkA	Pput_0081	-	potassium transporter peripheral membrane component
80	 66.90	+1	88211..89521	-	436	148545339	-	Pput_0082	-	sun protein
81	 66.45	+1	89518..90450	-	310	148545340	fmt	Pput_0083	-	methionyl-tRNA formyltransferase
82	 60.95	0	90511..91017	-	168	148545341	def	Pput_0084	-	peptide deformylase
83	 65.48	0	91224..92321	+	365	148545342	-	Pput_0085	-	DNA protecting protein DprA
84	 65.95	+1	92364..92921	+	185	148545343	-	Pput_0086	-	SUA5/yciO/yrdC domain-containing protein
85	 57.86	-1	93301..93618	+	105	148545344	-	Pput_0087	-	hypothetical protein
86	 63.80	0	93745..94722	-	325	148545345	-	Pput_0088	-	alcohol dehydrogenase
87	 64.04	0	94857..95768	+	303	148545346	-	Pput_0089	-	coproporphyrinogen III oxidase
88	 65.09	0	95794..96618	+	274	148545347	aroE	Pput_0090	-	shikimate 5-dehydrogenase
89	 63.73	0	96748..98313	-	521	148545348	-	Pput_0091	-	sulphate transporter
90	 58.44	0	98458..99381	-	307	148545349	-	Pput_0092	-	substrate-binding region of ABC-type glycine betaine transport system
91	 63.31	0	99396..100913	-	505	148545350	-	Pput_0093	-	sulfatase
92	 61.56	0	101022..101921	+	299	148545351	-	Pput_0094	-	LysR family transcriptional regulator
93	 64.08	0	102043..102660	-	205	148545352	-	Pput_0095	-	hypothetical protein
94	 63.06	0	102713..103045	+	110	148545353	-	Pput_0096	-	DOPA 4,5-dioxygenase
95	 65.19	0	103166..103975	-	269	148545354	trpA	Pput_0097	-	tryptophan synthase subunit alpha
96	 63.38	0	103972..105189	-	405	148545355	-	Pput_0098	-	tryptophan synthase subunit beta
97	 67.56	+1	105300..106196	+	298	148545356	-	Pput_0099	-	LysR family transcriptional regulator
98	 58.95	0	106193..106516	-	107	148545357	-	Pput_0100	-	protein of unknown function DUF883, ElaB
99	 54.63	-1	106667..106882	+	71	148545358	-	Pput_0101	-	hypothetical protein
100	 61.26	0	106983..107204	+	73	148545359	-	Pput_0102	-	hypothetical protein
61.99	MEAN

3.83	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.