IslandPath Analysis: Rickettsia felis URRWXCal2



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 32.00   STD DEV: 3.85
Rickettsia felis URRWXCal2, complete genome - 1..1485148
1400 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 29.20	0	1..822	+	273	67458393	-	RF_0001	-	hypothetical protein
2	 32.90	0	914..1375	+	153	67458394	trxA	RF_0002	-	thioredoxin
3	 29.97	0	1381..2124	+	247	67458395	rfbE	RF_0003	-	O-antigen export system ATP-binding protein RfbE
4	 29.09	0	2264..3040	+	258	67458396	rfbA	RF_0004	-	O-antigen export system permease protein RfbA
5	 33.71	0	3037..6264	+	1075	67458397	gltD	RF_0005	-	putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase
6	 38.36	+1	6426..7220	-	264	67458398	lpxA	RF_0006	-	UDP-N-acetylglucosamine acyltransferase
7	 35.84	0	7229..7666	-	145	67458399	fabZ	RF_0007	-	(3R)-hydroxymyristoyl-ACP dehydratase
8	 35.25	0	7897..8937	-	346	67458400	lpxD	RF_0008	-	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase
9	 33.47	0	9700..10440	+	246	67458401	-	RF_0009	-	alpha-beta hydrolase family esterase
10	 26.40	-1	10946..11248	+	100	67458402	-	RF_0010	-	hypothetical protein
11	 29.96	0	11601..12578	-	325	67458403	-	RF_0011	-	ankyrin repeat-containing protein
12	 42.94	+2	13117..14094	+	325	67458404	nifR3	RF_0012	-	nifR3 family TIM-barrel protein
13	 27.08	-1	14243..14626	+	127	67458405	-	RF_0013	-	hypothetical protein
14	 34.13	0	15083..15208	-	41	67458406	-	RF_0014	-	hypothetical protein
15	 30.12	0	15303..15551	+	82	67458407	-	RF_0015	-	antitoxin of toxin-antitoxin system StbD
16	 22.58	-2	15554..15832	+	92	67458408	-	RF_0016	-	toxin of toxin-antitoxin system
17	 29.46	0	15840..16355	-	171	67458409	-	RF_0017	-	hypothetical protein
18	 29.39	0	16343..17356	-	337	67458410	znuA	RF_0018	-	Zinc/manganese ABC transporter substrate binding protein
19	 30.48	0	17353..18510	-	385	67458411	pcnB	RF_0019	-	Poly(A) polymerase
20	 31.52	0	18494..19708	-	404	67458412	-	RF_0020	-	ComEC/Rec2-related protein
21	 33.22	0	19611..20513	-	300	67458413	-	RF_0021	-	ComEC/Rec2-related protein
22	 34.64	0	20794..25905	+	1703	67458414	sca1	RF_0022	-	cell surface antigen Sca1
23	 31.46	0	26398..26718	+	106	67458415	-	RF_0023	-	hypothetical protein
24	 30.25	0	26886..28085	+	399	67458416	-	RF_0024	-	hypothetical protein
25	 27.90	-1	28185..28883	+	232	67458417	-	RF_0025	-	hypothetical protein
26	 28.79	0	28998..30647	+	549	67458418	-	RF_0026	-	TPR repeat-containing protein
27	 28.69	0	30640..31134	-	164	67458419	atpF	RF_0027	-	F0F1 ATP synthase subunit B
28	 28.82	0	31240..31749	-	169	67458420	atpX	RF_0028	-	F0F1 ATP synthase subunit B'
29	 38.22	+1	31768..31992	-	74	67458421	atpE	RF_0029	-	F0F1 ATP synthase subunit C
30	 31.00	0	32229..32957	-	242	67458422	atpB	RF_0030	-	F0F1 ATP synthase subunit A
31	 30.61	0	32962..33291	-	109	67458423	-	RF_0031	-	hypothetical protein
32	 32.02	0	33416..34252	-	278	67458424	dsbG	RF_0032	-	protein-disulfide isomerase
33	 35.21	0	34413..34946	+	177	67458425	-	RF_0033	-	transcriptional regulator
34	 32.40	0	35094..36698	-	534	67458426	-	RF_0034	-	hypothetical protein
35	 32.54	0	36903..38165	-	420	67458427	recF	RF_0035	-	recombination protein F
36	 32.83	0	38035..38823	-	262	67458428	-	RF_0036	-	pyrroloquinoline quinone (coenzyme PQQ) biosynthesis protein C
37	 27.96	-1	38833..39018	-	61	67458429	-	RF_0037	-	dihydrofolate reductase FolA
38	 36.52	+1	39114..39458	-	114	67458430	-	RF_0038	-	dihydrofolate reductase FolA
39	 29.73	0	39448..40836	-	462	67458431	folKP	RF_0039	-	folate synthesis bifunctional protein
40	 32.88	0	41384..42043	-	219	67458432	-	RF_0040	-	hypothetical protein
41	 24.78	-1	42136..44391	-	751	67458433	-	RF_0041	-	hypothetical protein
42	 29.25	0	44367..44831	-	154	67458434	-	RF_0042	-	hypothetical protein
43	 27.14	-1	45059..45655	+	198	67458435	-	RF_0043	-	Sco2 protein precursor
44	 31.58	0	45666..46235	-	189	67458436	-	RF_0044	-	hypothetical protein
45	 26.01	-1	46470..47138	+	222	67458437	cvpA	RF_0045	-	hypothetical protein
46	 32.28	0	47449..48687	+	412	67458438	-	RF_0046	-	cell surface antigen-like protein Sca10
47	 38.81	+1	49122..50600	+	492	67458439	-	RF_0047	-	cell surface antigen-like protein Sca10
48	 37.65	+1	50536..50859	+	107	67458440	-	RF_0048	-	cell surface antigen-like protein Sca10
49	 32.82	0	51062..51643	+	193	67458441	-	RF_0049	-	transposase
50	 36.83	+1	51661..52461	-	266	67458442	-	RF_0050	-	transposase/IS protein
51	 36.71	+1	52458..52901	-	147	67458443	-	RF_0051	-	transposase
52	 35.78	0	52876..53487	-	203	67458444	-	RF_0052	-	transposase
53	 35.91	+1	54547..55866	-	439	67458445	-	RF_0053	-	putative surface antigen
54	 32.80	0	56155..56721	+	188	67458446	dcd	RF_0054	-	deoxycytidine triphosphate deaminase
55	 31.37	0	56930..57388	+	152	67458447	secB	RF_0055	-	preprotein translocase subunit SecB
56	 33.61	0	57613..58326	+	237	67458448	czcR	RF_0056	-	transcriptional activator protein CzcR
57	 29.08	0	58330..59151	+	273	67458449	queF	RF_0057	-	7-cyano-7-deazaguanine reductase
58	 34.22	0	59457..60017	-	186	67458450	-	RF_0058	-	hypothetical protein
59	 37.70	+1	60072..61469	-	465	67458451	pntB	RF_0059	-	NAD(p) transhydrogenase subunit beta
60	 35.24	0	61597..62331	-	244	67458452	ompW	RF_0060	-	OmpW family outer-membrane protein
61	 33.33	0	62487..63371	+	294	67458453	sam	RF_0061	-	S-adenosylmethionine transporter
62	 32.30	0	63358..64614	+	418	67458454	proP1	RF_0062	-	proline/betaine transporter
63	 30.78	0	65057..65761	+	234	67458455	-	RF_0063	-	ankyrin repeat-containing protein
64	 29.98	0	65712..66605	+	297	67458456	-	RF_0064	-	hypothetical protein
65	 33.12	0	66725..67645	+	306	67458457	-	RF_0065	-	transposase
66	 25.89	-1	67629..68300	+	223	67458458	-	RF_0066	-	hypothetical protein
67	 30.13	0	68331..73145	-	1604	67458459	sca2	RF_0067	-	cell surface antigen Sca2
68	 33.62	0	73318..74697	+	459	67458460	cysS	RF_0068	-	cysteinyl-tRNA synthetase
69	 33.11	0	75045..75932	+	295	67458461	rpsB	RF_0069	-	30S ribosomal protein S2
70	 36.13	+1	76101..77030	+	309	67458462	tsf	RF_0070	-	elongation factor Ts
71	 35.31	0	77233..78243	+	336	67458463	-	RF_0071	-	hypothetical protein
72	 33.26	0	78264..79658	-	464	67458464	kdtA	RF_0072	-	3-deoxy-D-manno-octulosonic-acid transferase
73	 30.44	0	79655..80311	-	218	67458465	-	RF_0073	-	hypothetical protein
74	 34.72	0	80419..81648	-	409	67458466	aatA	RF_0074	-	aspartate aminotransferase
75	 24.78	-1	81916..82920	+	334	67458467	-	RF_0075	-	hypothetical protein
76	 35.45	0	82925..83680	+	251	67458468	vacJ	RF_0076	-	VacJ lipoprotein precursor
77	 32.17	0	83700..84299	+	199	67458469	-	RF_0077	-	hypothetical protein
78	 29.37	0	84478..85359	+	293	67458470	prs	RF_0078	-	ribose-phosphate pyrophosphokinase
79	 35.57	0	85356..86744	+	462	67458471	alr	RF_0079	-	alanine racemase
80	 37.18	+1	86878..87657	+	259	67458472	-	RF_0080	-	ABC transporter permease protein
81	 33.07	0	87660..88418	+	252	67458473	mkl	RF_0081	-	ribonucleotide ABC transporter ATP-binding protein
82	 28.11	-1	88420..88668	+	82	67458474	-	RF_0082	-	hypothetical protein
83	 34.69	0	88742..89035	+	97	67458475	rpmB	RF_0083	-	50S ribosomal protein L28
84	 31.65	0	89032..89268	+	78	67458476	rpmE	RF_0084	-	50S ribosomal protein L31
85	 32.08	0	89980..90618	+	212	67458477	-	RF_0085	-	GTPase EngB
86	 27.81	-1	90566..91489	+	307	67458478	argB	RF_0086	-	acetylglutamate kinase
87	 31.25	0	91502..91789	+	95	67458479	virB3	RF_0087	-	Type IV secretory pathway, VirB3-like protein
88	 34.37	0	91953..94370	+	805	67458480	virB4_1	RF_0088	-	type IV secretion/conjugal transfer ATPase
89	 36.41	+1	94545..97961	+	1138	67458481	virB6_1	RF_0089	-	TrbL/VirB6 plasmid conjugative transfer protein
90	 35.07	0	97948..99966	+	672	67458482	virB6_2	RF_0090	-	TrbL/VirB6 plasmid conjugative transfer protein
91	 35.45	0	99973..102906	+	977	67458483	virB6_3	RF_0091	-	TrbL/VirB6 plasmid conjugative transfer protein
92	 32.96	0	103135..105807	+	890	67458484	virB6_4	RF_0092	-	TrbL/VirB6 plasmid conjugative transfer protein
93	 33.85	0	105951..109418	+	1155	67458485	virB6_5	RF_0093	-	TrbL/VirB6 plasmid conjugative transfer protein
94	 31.65	0	109503..109739	+	78	67458486	vapB2	RF_0094	-	antitoxin of toxin-antitoxin system VapB
95	 25.68	-1	109736..110140	+	134	67458487	vapC2	RF_0095	-	toxin of toxin-antitoxin system
96	 39.71	+2	110265..111314	+	349	67458488	pta	RF_0096	-	phosphate acetyltransferase
97	 32.52	0	111250..112473	+	407	67458489	ackA	RF_0097	-	acetate kinase
98	 34.04	0	112672..112956	+	94	67458490	-	RF_0098	-	hypothetical protein
99	 38.01	+1	113044..113748	+	234	67458491	trmD	RF_0099	-	tRNA (guanine-N(1)-)-methyltransferase
100	 34.29	0	113767..114183	+	138	67458492	rplS	RF_0100	-	50S ribosomal protein L19
32.00	MEAN

3.85	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.