IslandPath Analysis: Janthinobacterium sp. Marseille



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 54.72   STD DEV: 4.12
Janthinobacterium sp. Marseille, complete genome - 1..4110251
3697 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 53.94	0	1..1383	+	460	152981050	dnaA	mma_0001	-	chromosomal replication initiator protein DnaA
2	 54.92	0	1732..2838	+	368	152980594	dnaN	mma_0002	-	DNA polymerase III subunit beta
3	 56.02	0	3246..5744	+	832	152980048	gyrB	mma_0003	-	DNA gyrase subunit B
4	 48.11	-1	6002..7192	+	396	152983191	-	mma_0004	-	hypothetical protein
5	 47.36	-1	7435..9024	+	529	152982886	-	mma_0005	-	hypothetical protein
6	 41.78	-2	9021..9233	+	70	152983192	-	mma_0006	-	hypothetical protein
7	 42.55	-2	9999..10931	-	310	152982885	-	mma_0007	-	hypothetical protein
8	 44.52	-2	10955..12232	-	425	152982884	-	mma_0008	-	site-specific DNA methylase
9	 56.42	0	12742..14322	+	526	152981377	fhaC1	mma_0009	-	hemolysin activation/secretion protein
10	 52.93	0	14344..16359	+	671	152982749	-	mma_0010	-	haemagglutinin-like protein
11	 54.59	0	16328..17221	+	297	152982408	-	mma_0011	-	hypothetical protein
12	 55.36	0	17546..18571	-	341	152981055	-	mma_0012	-	response regulator/GGDEF domain-containing protein
13	 56.78	0	18589..19599	-	336	152980555	cheB1	mma_0013	-	chemotaxis-specific methylesterase
14	 57.33	0	19602..21872	-	756	152980535	cheA1	mma_0014	-	CheA chemotaxis protein
15	 57.79	0	21869..22510	-	213	152981926	cheW1	mma_0015	-	CheW purine-binding chemotaxis protein
16	 57.57	0	22536..23810	-	424	152980502	cheR2	mma_0016	-	CheR chemotaxis protein methyltransferase
17	 61.32	+1	23807..24292	-	161	152981925	cheW2	mma_0017	-	CheW purine-binding chemotaxis protein
18	 54.51	0	24304..25932	-	542	152981539	tar1	mma_0018	-	methyl-accepting chemotaxis protein
19	 58.47	0	26241..26801	-	186	152982808	-	mma_0019	-	hypothetical protein
20	 57.02	0	27209..30412	+	1067	152981203	acrB1	mma_0020	-	AcrB/AcrD/AcrF family multidrug efflux protein
21	 55.88	0	30414..31664	+	416	152981819	acrA1	mma_0021	-	membrane fusion protein
22	 57.91	0	31661..33088	+	475	152981317	tolC1	mma_0022	-	outer membrane protein, tolC-like
23	 57.02	0	33158..33841	+	227	152981360	-	mma_0023	-	two-components system response regulator
24	 55.75	0	33838..35229	+	463	152982803	-	mma_0024	-	two-component system sensor protein
25	 59.56	+1	35923..37062	-	379	152981283	-	mma_0025	-	low-specificity D-threonine aldolase
26	 55.51	0	37235..39223	-	662	152981383	tar2	mma_0026	-	methyl-accepting chemotaxis protein
27	 51.81	0	39509..40753	+	414	152980350	pncB	mma_0027	-	nicotinate phosphoribosyltransferase
28	 51.99	0	40754..41482	-	242	152983019	ompW2	mma_0028	-	outer membrane protein W
29	 53.40	0	41613..42554	-	313	152982609	-	mma_0029	-	hypothetical protein
30	 52.19	0	42748..43113	+	121	152982190	-	mma_0030	-	hypothetical protein
31	 56.93	0	43133..44365	-	410	152981445	-	mma_0031	-	hypothetical protein
32	 59.22	+1	44400..45674	-	424	152982577	amaB1	mma_0032	-	allantoate amidohydrolase
33	 54.37	0	45700..46431	-	243	152982233	-	mma_0033	-	ABC-type polar amino acid transport system, ATPase component
34	 54.19	0	46412..47068	-	218	152981388	-	mma_0034	-	ABC-type amino acid transport system, permease component
35	 56.70	0	47065..47736	-	223	152982785	-	mma_0035	-	ABC-type amino-acid transport system, permease component
36	 54.10	0	47821..48600	-	259	152981681	-	mma_0036	-	ABC transporter substrate binding protein
37	 59.06	+1	48597..49451	-	284	152982693	-	mma_0037	-	GntR family transcriptional regulator
38	 55.51	0	49711..51306	-	531	152980973	ahpF	mma_0038	-	alkyl hydroperoxide reductase subunit F
39	 48.40	-1	51402..51965	-	187	152981222	ahpC	mma_0039	-	alkyl hydroperoxide reductase subunit C
40	 57.18	0	52298..53056	+	252	152981597	-	mma_0040	-	hypothetical protein
41	 50.54	-1	53103..53288	+	61	152983193	-	mma_0041	-	4-oxalocrotonate tautomerase
42	 57.18	0	53337..53747	+	136	152982335	-	mma_0042	-	hypothetical protein
43	 56.63	0	53846..54373	+	175	152981797	greB1	mma_0043	-	transcription elongation factor GreB
44	 54.55	0	54437..54733	+	98	152982168	-	mma_0044	-	hypothetical protein
45	 54.23	0	55072..57258	+	728	152982641	-	mma_0045	-	TonB-dependent siderophore receptor
46	 54.99	0	57315..57845	-	176	152981781	-	mma_0046	-	hypothetical protein
47	 53.30	0	57847..58452	-	201	152981913	pnuC	mma_0047	-	nicotinamide mononucleotide transporter pnuC
48	 56.52	0	58613..58819	+	68	152983194	-	mma_0048	-	hypothetical protein
49	 54.22	0	59276..60022	+	248	152982438	-	mma_0049	-	TetR family transcriptional regulator
50	 60.14	+1	60019..61473	+	484	152981451	tolC2	mma_0050	-	outer membrane protein, tolC-like
51	 57.47	0	61506..62690	+	394	152982473	acrA2	mma_0051	-	membrane fusion protein
52	 56.18	0	62699..65827	+	1042	152981188	acrB2	mma_0052	-	cation/multidrug efflux pump
53	 57.73	0	65827..66576	+	249	152982096	-	mma_0053	-	hypothetical protein
54	 51.08	0	66578..66808	+	76	152982735	-	mma_0054	-	hypothetical protein
55	 56.50	0	66830..67321	-	163	152982167	-	mma_0055	-	hypothetical protein
56	 58.13	0	67500..68600	+	366	152981945	-	mma_0056	-	hypothetical protein
57	 54.48	0	68605..70311	-	568	152981065	yjdB	mma_0057	-	inner membrane protein
58	 55.90	0	70430..71674	-	414	152982447	colS1	mma_0058	-	two-component system sensor histidine kinase ColS
59	 59.94	+1	71664..72347	-	227	152983465	colR1	mma_0059	-	two-components system response regulator colR
60	 50.49	-1	72436..72639	-	67	152982027	-	mma_0060	-	hypothetical protein
61	 51.97	0	72653..72931	-	92	152982534	-	mma_0061	-	hypothetical protein
62	 57.28	0	73018..74157	-	379	152981054	-	mma_0062	-	hypothetical protein
63	 50.40	-1	74314..74565	-	83	152982415	-	mma_0063	-	hypothetical protein
64	 55.23	0	75081..75893	-	270	152981581	parA1	mma_0064	-	chromosome partitioning protein ParA
65	 57.59	0	76057..77577	-	506	152982435	-	mma_0065	-	hypothetical protein
66	 56.17	0	77589..79742	-	717	152982643	-	mma_0066	-	TonB-dependent receptor
67	 56.39	0	79771..80208	-	145	152981731	-	mma_0067	-	hypothetical protein
68	 58.06	0	80559..80930	-	123	152982265	-	mma_0068	-	hypothetical protein
69	 55.61	0	81151..81783	+	210	152981400	-	mma_0069	-	hypothetical protein
70	 56.64	0	81841..82269	+	142	152981892	-	mma_0070	-	hypothetical protein
71	 58.50	0	82303..82755	+	150	152982199	-	mma_0071	-	hypothetical protein
72	 52.51	0	82904..83242	+	112	152982434	-	mma_0072	-	hypothetical protein
73	 54.13	0	83320..83622	-	100	152982307	-	mma_0073	-	hypothetical protein
74	 56.04	0	83798..84277	+	159	152981450	creA	mma_0074	-	CreA protein
75	 55.62	0	84302..85315	+	337	152982074	-	mma_0075	-	hypothetical protein
76	 59.82	+1	85330..86571	-	413	152981251	-	mma_0076	-	hypothetical protein
77	 52.01	0	86790..87362	+	190	152980313	tag	mma_0077	-	DNA-3-methyladenine glycosylase I
78	 54.25	0	87982..88416	+	144	152982889	sugE	mma_0078	-	SugE-like protein
79	 50.76	0	88465..88992	-	175	152980894	-	mma_0079	-	hypothetical protein
80	 57.70	0	89265..90971	-	568	152981433	tar3	mma_0080	-	methyl-accepting chemotaxis protein
81	 53.74	0	91089..91583	-	164	152981612	cheW3	mma_0081	-	purine-binding chemotaxis protein CheW
82	 56.58	0	92045..93670	+	541	152981138	-	mma_0082	-	hypothetical protein
83	 56.97	0	93861..95561	+	566	152980930	tar4	mma_0083	-	methyl-accepting chemotaxis protein
84	 54.14	0	95605..96570	-	321	152981076	corA1	mma_0084	-	Mg2+/Co2+ transporter
85	 57.14	0	96674..97387	-	237	152982890	-	mma_0085	-	hypothetical protein
86	 55.10	0	97511..99136	+	541	152982880	-	mma_0086	-	Mg-protoporphyrin IX monomethyl ester oxidative cyclase
87	 52.20	0	99160..99477	-	105	152982891	-	mma_0087	-	hypothetical protein
88	 57.08	0	99502..101181	+	559	152981082	hvsT	mma_0088	-	high affinity sulfate transporter
89	 55.08	0	101235..102002	-	255	152981366	terC1	mma_0089	-	tellurium resistance protein TerC
90	 51.65	0	102310..103128	+	272	152982187	-	mma_0090	-	hypothetical protein
91	 56.73	0	103177..103860	-	227	152980892	-	mma_0091	-	GntR family transcriptional regulator
92	 61.92	+1	104042..104821	+	259	152982373	-	mma_0092	-	hypothetical protein
93	 59.00	+1	104811..106049	+	412	152981171	-	mma_0093	-	alcohol dehydrogenase
94	 56.97	0	106240..107394	+	384	152981427	-	mma_0094	-	major facilitator transporter
95	 56.50	0	107391..108098	-	235	152981290	livF1	mma_0095	-	ABC-type branched-chain amino acid transport systems, ATPase component
96	 55.08	0	108098..108865	-	255	152980928	livG1	mma_0096	-	branched-chain amino acid transporter ATP-binding protein
97	 55.33	0	108862..109893	-	343	152981595	livM1	mma_0097	-	ABC-type branched-chain amino acid transport system, permease component
98	 56.01	0	109890..110771	-	293	152981606	livH1	mma_0098	-	branched chain amino acid ABC transporter permease
99	 53.86	0	110844..112139	-	431	152981674	livK1	mma_0099	-	ABC-type branched-chain amino acid transport systems, periplasmic component
100	 52.81	0	112380..112682	+	100	152983464	-	mma_0100	-	hypothetical protein
54.72	MEAN

4.12	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.