IslandPath Analysis: Deinococcus radiodurans R1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 67.25   STD DEV: 4.30
Deinococcus radiodurans R1 chromosome 1, complete sequence - 1..2648638
2629 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 63.79	0	1..1182	-	393	15805043	-	DR_0001	-	DNA polymerase III, beta subunit
2	 64.47	0	1904..3268	-	454	15805044	-	DR_0002	-	chromosomal replication initiator protein
3	 66.78	0	3412..4287	+	291	15805045	-	DR_0003	-	hypothetical protein
4	 67.90	0	4378..5430	+	350	15805046	-	DR_0004	-	MutT/nudix family protein
5	 69.91	0	5438..6115	+	225	15805047	-	DR_0005	-	hypothetical protein
6	 67.05	0	6162..6944	-	260	15805048	-	DR_0006	-	hypothetical protein
7	 71.09	0	6986..7822	+	278	15805049	-	DR_0007	-	hypothetical protein
8	 71.76	+1	7819..8859	+	346	15805050	-	DR_0008	-	hypothetical protein
9	 68.14	0	8925..10283	+	452	15805051	-	DR_0009	-	hypothetical protein
10	 59.77	-1	10413..11615	+	400	15807617	-	DR_0010	-	putative transposase
11	 65.99	0	11855..12736	-	293	15805052	-	DR_0011	-	hypothetical protein
12	 68.51	0	13333..14199	-	288	15805053	-	DR_0012	-	chromosome partitioning protein
13	 69.70	0	14183..15073	-	296	15805054	-	DR_0013	-	chromosome partitioning ATPase Soj
14	 69.29	0	15101..15862	-	253	15805055	-	DR_0014	-	gidB protein
15	 65.27	0	15859..16215	-	118	15805056	-	DR_0015	-	hypothetical protein
16	 72.06	+1	16307..17047	-	246	15805057	-	DR_0016	-	hypothetical protein
17	 66.91	0	17147..17557	-	136	15805058	-	DR_0017	-	hypothetical protein
18	 68.77	0	17568..18185	-	205	15805059	-	DR_0018	-	hypothetical protein
19	 69.39	0	18182..19063	-	293	15805060	-	DR_0019	-	hypothetical protein
20	 72.15	+1	19258..20643	+	461	15805061	-	DR_0020	-	ribonuclease II family protein
21	 65.17	0	20768..21034	+	88	15805062	-	DR_0021	-	hypothetical protein
22	 61.33	-1	21162..21761	-	199	15805063	-	DR_0022	-	hypothetical protein
23	 69.48	0	22233..22766	+	177	15805064	-	DR_0023	-	phosphoribosylaminoimidazole carboxylase, catalytic subunit
24	 70.53	0	22763..23875	+	370	15805065	-	DR_0024	-	phosphoribosylaminoimidazole carboxylase, ATPase subunit
25	 63.42	0	23983..25182	+	399	15805066	-	DR_0025	-	hypothetical protein
26	 62.72	-1	25273..26082	+	269	15805067	-	DR_0026	-	methyltransferase, putative
27	 66.22	0	26166..27968	-	600	15805068	-	DR_0027	-	tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
28	 66.97	0	28040..29674	+	544	15805069	-	DR_0028	-	aminotransferase, putative
29	 66.40	0	29796..30941	+	381	15805070	-	DR_0029	-	2-oxo acid dehydrogenase, E1 component, alpha subunit
30	 66.47	0	30938..31972	+	344	15805071	-	DR_0030	-	2-oxo acid dehydrogenase, E1 component, beta subunit
31	 66.26	0	32002..32244	+	80	15805072	-	DR_0031	-	hypothetical protein
32	 67.24	0	32248..33825	+	525	15805073	-	DR_0032	-	branched-chain alpha-keto acid dehydrogenase subunit E2
33	 65.40	0	33903..34376	-	157	15805074	-	DR_0033	-	hypothetical protein
34	 65.52	0	34348..34695	+	115	15805075	-	DR_0034	-	hypothetical protein
35	 66.01	0	34829..36046	+	405	15805076	-	DR_0035	-	adenylosuccinate synthetase
36	 65.59	0	36181..36831	+	216	15805077	folE	DR_0036	-	GTP cyclohydrolase I
37	 64.85	0	36859..37464	+	201	15805078	-	DR_0037	-	hypothetical protein
38	 66.13	0	37446..38756	+	436	15805079	-	DR_0038	-	serine hydroxymethyltransferase
39	 71.34	0	38823..39977	+	384	15805080	-	DR_0039	-	hypothetical protein
40	 68.13	0	39999..40475	-	158	15805081	-	DR_0040	-	hypothetical protein
41	 70.29	0	40458..41036	+	192	15805082	-	DR_0041	-	hypothetical protein
42	 66.02	0	41050..41823	+	257	15805083	-	DR_0042	-	hypothetical protein
43	 73.54	+1	41990..42775	-	261	15805084	-	DR_0043	-	hypothetical protein
44	 68.97	0	42772..43899	-	375	15805085	-	DR_0044	-	N-acylamino acid racemase
45	 71.85	+1	43942..44520	+	192	15805086	-	DR_0045	-	hypothetical protein
46	 72.58	+1	44596..45102	+	168	15805087	-	DR_0046	-	hypothetical protein
47	 67.17	0	45124..45321	+	65	15805088	-	DR_0047	-	hypothetical protein
48	 67.06	0	45318..46082	+	254	15805089	-	DR_0048	-	hypothetical protein
49	 69.36	0	46123..47349	+	408	15805090	-	DR_0049	-	hypothetical protein
50	 67.82	0	47370..47891	-	173	15805091	-	DR_0050	-	hypothetical protein
51	 64.15	0	47912..48268	-	118	15805092	-	DR_0051	-	HesB/YadR/YfhF family protein
52	 69.44	0	48296..49051	-	251	15805093	-	DR_0052	-	hypothetical protein
53	 67.07	0	49054..49548	-	164	15805094	-	DR_0053	-	hypothetical protein
54	 67.26	0	49657..49992	+	111	15805095	-	DR_0054	-	hypothetical protein
55	 71.92	+1	49989..50939	+	316	15805096	-	DR_0055	-	repressor protein, putative
56	 70.28	0	51060..52361	+	433	15805097	-	DR_0056	-	benzoate membrane transport protein, putative
57	 69.41	0	52370..52624	-	84	15805098	-	DR_0057	-	hypothetical protein
58	 67.45	0	52646..54421	-	591	15805099	-	DR_0058	-	serine/threonine protein kinase, putative
59	 62.46	-1	54831..55115	+	94	15805100	-	DR_0059	-	hypothetical protein
60	 73.66	+1	55152..55580	+	142	15805101	-	DR_0060	-	hypothetical protein
61	 74.81	+1	55573..57009	+	478	15805102	-	DR_0061	-	hypothetical protein
62	 72.34	+1	57231..58217	-	328	15805103	-	DR_0062	-	ABC transporter, ATP-binding protein
63	 71.09	0	58272..59153	-	293	15805104	-	DR_0063	-	hypothetical protein
64	 66.67	0	59243..60433	-	396	15805105	-	DR_0064	-	hypothetical protein
65	 69.30	0	60568..63186	+	872	15805106	-	DR_0065	-	ATP-dependent helicase, putative
66	 70.58	0	63356..64147	-	263	15805107	-	DR_0066	-	aminoglycoside 3`-phosphotransferase
67	 74.84	+1	64184..65113	+	309	15805108	-	DR_0067	-	hypothetical protein
68	 65.33	0	65110..65484	+	124	15805109	-	DR_0068	-	hypothetical protein
69	 66.39	0	65586..65948	+	120	15805110	-	DR_0069	-	hypothetical protein
70	 66.67	0	66004..66603	+	199	15805111	-	DR_0070	-	hypothetical protein
71	 67.06	0	66759..68792	-	677	15805112	-	DR_0071	-	peptidyl-prolyl cis-trans isomerase
72	 71.30	0	69032..69571	+	179	15805113	-	DR_0072	-	hypothetical protein
73	 68.79	0	69707..71875	-	722	15805114	-	DR_0073	-	phosphate acetyltransferase
74	 68.86	0	71920..72513	-	197	15805115	-	DR_0074	-	TetR family transcriptional regulator
75	 67.82	0	72681..77084	+	1467	15805116	-	DR_0075	-	hypothetical protein
76	 73.63	+1	77159..78364	+	401	15805117	-	DR_0076	-	molybdopterin biosynthesis MoeA
77	 67.27	0	78380..79201	-	273	15805118	aroE	DR_0077	-	shikimate 5-dehydrogenase
78	 66.88	0	79205..80125	-	306	15805119	-	DR_0078	-	N-acetyl-gamma-glutamyl-phosphate reductase
79	 64.73	0	80122..80637	-	171	15805120	-	DR_0079	-	MutT/nudix family protein
80	 65.35	0	80645..81706	-	353	15805121	-	DR_0080	-	ornithine carbamoyltransferase
81	 65.69	0	81769..82482	-	237	15805122	-	DR_0081	-	hypothetical protein
82	 67.74	0	82517..82981	-	154	15805123	-	DR_0082	-	hypothetical protein
83	 63.96	0	83069..84322	-	417	15805124	-	DR_0083	-	2-oxoglutarate dehydrogenase, dihydrolipoamide succinyltransferase E2 component
84	 63.25	0	86474..87790	-	438	15805125	obgE	DR_0084	-	GTPase ObgE
85	 61.96	-1	87904..88179	-	91	15805126	rpmA	DR_0085	-	50S ribosomal protein L27
86	 61.18	-1	88194..88703	-	169	15805127	-	DR_0086	-	ribosomal protein L21
87	 65.19	0	88873..89346	-	157	15805128	-	DR_0087	-	transcriptional regulator NrdR
88	 70.80	0	89343..90140	-	265	15805129	-	DR_0088	-	short chain dehydrogenase/reductase family oxidoreductase
89	 72.79	+1	90184..91260	-	358	15805130	-	DR_0089	-	hypothetical protein
90	 75.82	+1	91257..91955	-	232	15805131	-	DR_0090	-	hypothetical protein
91	 72.42	+1	91945..92883	-	312	15805132	-	DR_0091	-	hypothetical protein
92	 69.93	0	92880..93155	-	91	15805133	-	DR_0092	-	MutT/nudix family protein
93	 67.64	0	93152..94687	-	511	15805134	-	DR_0093	-	phytoene dehydrogenase, putative
94	 58.06	-2	94950..95495	+	181	15805135	-	DR_0094	-	hypothetical protein
95	 70.83	0	95577..97403	-	608	15805136	-	DR_0095	-	ABC transporter, ATP-binding protein
96	 70.49	0	97501..99252	-	583	15805137	-	DR_0096	-	ABC transporter ATP-binding protein
97	 68.42	0	99317..99886	-	189	15805138	-	DR_0097	-	hypothetical protein
98	 61.49	-1	100030..100338	+	102	15805139	rpsF	DR_0098	-	30S ribosomal protein S6
99	 60.19	-1	100371..100802	+	143	15805140	-	DR_0099	-	single-stranded DNA-binding protein
100	 63.23	0	100829..101361	+	177	15807618	ssb	DR_0100	-	single-stranded DNA-binding protein
67.25	MEAN

4.30	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.