IslandPath Analysis: Haemophilus influenzae 86-028NP



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 38.35   STD DEV: 3.58
Haemophilus influenzae 86-028NP, complete genome - 1..1914490
1792 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 40.78	0	2..1021	+	339	68248552	gapA	NTHI0001	-	glyceraldehyde-3-phosphate dehydrogenase
2	 37.45	0	1191..3014	+	607	68248553	-	NTHI0002	-	long chain fatty acid CoA ligase
3	 37.52	0	3051..3839	-	262	68248554	-	NTHI0003	-	hypothetical protein
4	 42.80	+1	3855..4319	-	154	68248555	-	NTHI0004	-	putative metalloprotease
5	 36.53	0	4581..5393	-	270	68248556	fdhD	NTHI0006	-	formate dehydrogenase accessory protein
6	 39.91	0	5664..8750	+	1028	68248557	fdxG	NTHI0007	-	formate dehydrogenase major subunit
7	 41.75	0	8752..9690	+	312	68248558	fdxH	NTHI0010	-	formate dehydrogenase, iron-sulfur subunit
8	 38.08	0	9683..10399	+	238	68248559	fdxI	NTHI0011	-	formate dehydrogenase, cytochrome B556 subunit
9	 36.96	0	10469..11377	+	302	68248560	fdhE	NTHI0012	-	formate dehydrogenase accessory protein FdhE
10	 35.60	0	11421..11861	-	146	68248561	rimI	NTHI0013	-	ribosomal-protein-alanine N-acetyltransferase
11	 40.74	0	11864..12268	-	134	68248562	holD	NTHI0015	-	DNA polymerase III subunit psi
12	 36.46	0	12374..13366	+	330	68248563	rsmC	NTHI0016	-	16S ribosomal RNA m2G1207 methyltransferase
13	 38.50	0	13434..14342	-	302	68248564	era	NTHI0018	-	GTP-binding protein Era
14	 42.11	+1	14339..15022	-	227	68248565	rnc	NTHI0019	-	ribonuclease III
15	 38.86	0	15024..16073	-	349	68248566	lepB	NTHI0020	-	Signal peptidase I
16	 40.46	0	16082..17878	-	598	68248567	lepA	NTHI0021	-	GTP-binding protein LepA
17	 38.28	0	18047..18430	-	127	68248568	-	NTHI0022	-	autonomous glycyl radical cofactor GrcA
18	 39.24	0	18688..19347	+	219	68248569	ung	NTHI0025	-	uracil-DNA glycosylase
19	 41.19	0	19417..20841	-	474	68248570	-	NTHI0026	-	hypothetical protein
20	 40.62	0	21224..22663	-	479	68248571	-	NTHI0027	-	hypothetical protein
21	 37.55	0	22665..24062	-	465	68248572	citG	NTHI0028	-	CitXG
22	 41.12	0	24243..25745	-	500	68248573	citF	NTHI0029	-	citrate lyase alpha chain
23	 42.47	+1	25760..26635	-	291	68248574	citE	NTHI0030	-	citrate lyase beta chain
24	 41.67	0	26632..26919	-	95	68248575	citD	NTHI0031	-	citrate lyase subunit gamma
25	 35.22	0	26957..27964	-	335	68248576	citC	NTHI0032	-	[citrate [pro-3S]-lyase] ligase
26	 40.19	0	28215..29177	-	320	68248577	lipA	NTHI0033	-	lipoyl synthase
27	 38.34	0	29231..29869	-	212	68248578	lipB	NTHI0034	-	lipoyltransferase
28	 32.26	-1	29871..30149	-	92	68248579	-	NTHI0035	-	hypothetical protein
29	 35.36	0	30205..31386	-	393	68248580	dacA	NTHI0036	-	penicillin-binding protein 5 precursor
30	 34.72	-1	31402..32265	-	287	68248581	rlpA	NTHI0037	-	RlpA-like protein
31	 38.53	0	32318..33433	-	371	68248582	mrdB	NTHI0038	-	rod shape-determining protein
32	 38.70	0	33423..35378	-	651	68248583	mrdA	NTHI0039	-	penicillin-binding protein 2
33	 44.44	+1	35400..35867	-	155	68248584	-	NTHI0041	-	SPOUT methyltransferase superfamily protein
34	 37.54	0	35921..36229	-	102	68248585	-	NTHI0042	-	hypothetical protein
35	 41.61	0	36354..38009	-	551	68248586	-	NTHI0043	-	hypothetical protein
36	 36.99	0	38215..39993	+	592	68248587	-	NTHI0044	-	ABC transporter ATP-binding protein
37	 39.84	0	40042..41178	+	378	68248588	mreB	NTHI0045	-	rod shape-determining protein MreB
38	 37.50	0	41258..42313	+	351	68248589	mreC	NTHI0046	-	rod shape-determining protein MreC
39	 34.97	0	42313..42801	+	162	68248590	mreD	NTHI0047	-	rod shape-determining protein MreD
40	 32.05	-1	42852..43628	-	258	68248591	-	NTHI0048	-	hypothetical protein
41	 36.82	0	43638..44441	-	267	68248592	xthA	NTHI0049	-	exonuclease III
42	 35.41	0	44489..45163	-	224	68248593	rluA2	NTHI0050	-	putative pseudouridine synthase
43	 36.15	0	45163..46227	-	354	68248594	-	NTHI0051	-	hypothetical protein
44	 36.05	0	46287..46949	-	220	68248595	-	NTHI0052	-	FtsH-interacting integral membrane protein
45	 36.58	0	47276..47830	-	184	68248596	-	NTHI0053	-	hypothetical protein
46	 33.61	-1	47897..48259	+	120	68248597	phnA	NTHI0054	-	PhnA-like protein
47	 38.34	0	48312..48950	-	212	68248598	eda	NTHI0055	-	keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase
48	 35.61	0	48959..50362	-	467	68248599	uxuC	NTHI0056	-	glucuronate isomerase
49	 33.92	-1	50372..51229	-	285	68248600	-	NTHI0057	-	D-mannonate oxidoreductase
50	 34.04	-1	52192..53463	-	423	68248601	-	NTHI0060	-	putative TRAP-type C4-dicarboxylate transport system, large permease component
51	 30.52	-2	53473..53970	-	165	68248602	-	NTHI0061	-	putative TRAP-type C4-dicarboxylate transport system, small permease component
52	 28.98	-2	54009..54995	-	328	68248603	-	NTHI0062	-	putative TRAP-type C4-dicarboxylate transport system, periplasmic component
53	 34.60	-1	55022..56050	-	342	68248604	-	NTHI0063	-	hypothetical protein
54	 31.09	-2	56160..56960	+	266	68248605	uxuR	NTHI0064	-	uxu operon regulator
55	 38.48	0	56988..58172	+	394	68248606	uxuA	NTHI0065	-	mannonate dehydratase
56	 35.99	0	58225..58938	-	237	68248607	-	NTHI0066	-	putative membrane protein TerC
57	 39.34	0	59036..60865	-	609	68248608	uvrC	NTHI0067	-	excinuclease ABC subunit C
58	 41.83	0	60867..61631	-	254	68248609	kdsB	NTHI0068	-	3-deoxy-manno-octulosonate cytidylyltransferase
59	 40.14	0	61702..62700	-	332	68248610	lpxK	NTHI0069	-	tetraacyldisaccharide 4'-kinase
60	 38.10	0	62773..64536	-	587	68248611	msbA	NTHI0072	-	lipid transporter ATP-binding/permease protein
61	 38.32	0	64577..66943	-	788	68248612	rec2	NTHI0073	-	recombination protein 2
62	 40.18	0	67202..67639	+	145	68248613	dksA	NTHI0074	-	DnaK suppressor protein
63	 40.69	0	67887..69245	+	452	68248614	pcnB	NTHI0076	-	poly polymerase
64	 38.92	0	69254..69736	+	160	68248615	folK	NTHI0077	-	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
65	 34.17	-1	69812..70288	+	158	68248616	-	NTHI0078	-	hypothetical protein
66	 32.64	-1	70296..71594	+	432	68248617	amiB	NTHI0079	-	N-acetylmuramoyl-L-alanine amidase AmiB precursor
67	 39.58	0	71595..73484	+	629	68248618	mutL	NTHI0080	-	DNA mismatch repair protein
68	 43.59	+1	73492..74427	+	311	68248619	miaA	NTHI0081	-	tRNA delta(2)-isopentenylpyrophosphate transferase
69	 38.22	0	74433..77378	+	981	68248620	glnE	NTHI0082	-	glutamate-ammonia-ligase adenylyltransferase
70	 38.04	0	77463..79139	-	558	68248621	recN	NTHI0083	-	DNA repair protein RecN
71	 37.73	0	79251..80069	-	272	68248622	ppnK	NTHI0084	-	inorganic polyphosphate/ATP-NAD kinase
72	 38.87	0	80133..80837	+	234	68248623	grpE	NTHI0085	-	hypothetical protein
73	 37.68	0	80850..81194	-	114	68248624	-	NTHI0086	-	hypothetical protein
74	 31.97	-1	81187..81627	-	146	68248625	-	NTHI0087	-	hypothetical protein
75	 41.76	0	81908..84031	+	707	68248626	nrdD	NTHI0088	-	anaerobic ribonucleoside triphosphate reductase
76	 39.61	0	84150..85010	+	286	68248627	tesB	NTHI0089	-	Acyl-CoA thioesterase II
77	 40.43	0	85171..86550	-	459	68248628	cysS	NTHI0091	-	cysteinyl-tRNA synthetase
78	 36.47	0	86653..87162	+	169	68248629	ppiB	NTHI0092	-	peptidyl-prolyl cis-trans isomerase B
79	 32.18	-1	87166..87597	+	143	68248630	-	NTHI0093	-	hypothetical protein
80	 38.66	0	87739..88527	+	262	68248631	-	NTHI0095	-	putative deoxyribonuclease
81	 44.57	+1	88589..88846	+	85	68248632	-	NTHI0096	-	hypothetical protein
82	 36.23	0	88857..89132	+	91	68248633	-	NTHI0097	-	hypothetical protein
83	 36.11	0	89182..89505	-	107	68248634	trxA	NTHI0098	-	thioredoxin
84	 39.46	0	89625..90620	-	331	68248635	ddh	NTHI0099	-	D-lactate dehydrogenase
85	 38.48	0	90633..91778	-	381	68248636	metB	NTHI0100	-	cystathionine gamma-synthase
86	 36.44	0	92334..93170	+	278	68248637	-	NTHI0101	-	ATPase involved in chromosome partitioning
87	 38.20	0	93172..94527	+	451	68248638	dnaB2	NTHI0102	-	replicative DNA helicase
88	 37.10	0	94520..96220	+	566	68248639	-	NTHI0103	-	hypothetical protein
89	 39.31	0	96220..96771	+	183	68248640	-	NTHI0104	-	hypothetical protein
90	 36.85	0	96921..98144	+	407	68248641	-	NTHI0106	-	hypothetical protein
91	 38.36	0	98441..99196	+	251	68248642	-	NTHI0107	-	hypothetical protein
92	 38.65	0	99196..99684	+	162	68248643	-	NTHI0108	-	hypothetical protein
93	 41.84	0	99930..100352	+	140	68248644	ssb2	NTHI0109	-	single-strand DNA-binding protein
94	 38.15	0	100379..100897	+	172	68248645	-	NTHI0110	-	putative lipoprotein
95	 35.48	0	101113..101670	-	185	68248646	-	NTHI0111	-	hypothetical protein
96	 38.86	0	101746..103806	+	686	68248647	topB2	NTHI0112	-	DNA topoisomerase III
97	 36.60	0	104691..105119	+	142	68248648	-	NTHI0113	-	hypothetical protein
98	 36.56	0	105131..105223	+	30	68248649	-	NTHI0114	-	hypothetical protein
99	 37.85	0	105234..105875	+	213	68248650	-	NTHI0115	-	hypothetical protein
100	 34.31	-1	105910..106317	+	135	68248651	-	NTHI0116	-	hypothetical protein
38.35	MEAN

3.58	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.