IslandPath Analysis: Treponema denticola ATCC 35405



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 37.25   STD DEV: 5.76
Treponema denticola ATCC 35405, complete genome - 1..2843201
2767 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 38.30	0	166..1575	-	469	42525520	dnaA	TDE0001	-	chromosomal replication initiator protein DnaA
2	 44.91	+1	1684..3600	+	638	42525521	gyrB	TDE0002	-	DNA gyrase, B subunit
3	 41.53	0	3623..4342	+	239	42525522	-	TDE0003	-	hypothetical protein
4	 42.22	0	4383..5057	+	224	42525523	-	TDE0004	-	hypothetical protein
5	 40.81	0	5075..6130	-	351	42525524	ltaE	TDE0005	-	L-threonine aldolase, low-specificity
6	 40.73	0	6200..9784	-	1194	42525525	-	TDE0006	-	Snf2 family protein
7	 33.68	0	10014..10868	+	284	42525526	-	TDE0007	-	hypothetical protein
8	 43.24	+1	11031..13706	+	891	42525527	-	TDE0008	-	copper-translocating P-type ATPase
9	 39.17	0	13814..14635	-	273	42525528	-	TDE0009	-	hypothetical protein
10	 39.68	0	14720..15286	+	188	42525529	-	TDE0010	-	MutT/nudix family protein
11	 42.90	0	15548..16195	+	215	42525530	-	TDE0011	-	peroxiredoxin
12	 40.55	0	16308..17762	+	484	42525531	-	TDE0012	-	carbon starvation protein CstA, putative
13	 43.31	+1	17848..18729	-	293	42525532	folD	TDE0013	-	methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase
14	 40.29	0	18930..19547	+	205	42525533	-	TDE0014	-	hypothetical protein
15	 38.34	0	19567..20604	+	345	42525534	-	TDE0015	-	putative lipoprotein
16	 45.02	+1	20597..21922	+	441	42525535	-	TDE0016	-	recombination factor protein RarA
17	 41.79	0	21998..23026	-	342	42525536	-	TDE0017	-	hypothetical protein
18	 42.71	0	23163..23663	-	166	42525537	-	TDE0018	-	LysM domain-containing protein
19	 42.64	0	23755..25419	-	554	42525538	fhs	TDE0019	-	formate--tetrahydrofolate ligase
20	 39.23	0	25586..26941	+	451	42525539	glyS	TDE0020	-	glycyl-tRNA synthetase
21	 33.63	0	26954..27955	+	333	42525540	-	TDE0021	-	CDP-alcohol phosphatidyltransferase family protein
22	 35.26	0	28012..28581	+	189	42525541	-	TDE0022	-	hypothetical protein
23	 33.33	0	28613..29509	-	298	42525542	-	TDE0023	-	acetyltransferase
24	 41.82	0	29509..31182	-	557	42525543	-	TDE0024	-	glycosy hydrolase family protein
25	 36.17	0	31191..31649	-	152	42525544	-	TDE0025	-	hypothetical protein
26	 40.72	0	31916..33106	-	396	42525545	-	TDE0026	-	TraB family protein
27	 37.50	0	33093..34076	-	327	42525546	-	TDE0027	-	DHH superfamily protein, subfamily 1
28	 33.17	0	34146..36020	-	624	42525547	-	TDE0028	-	ABC transporter ATP-binding protein
29	 34.51	0	36034..37812	-	592	42525548	-	TDE0029	-	ABC transporter ATP-binding protein
30	 29.36	-1	38018..38797	-	259	42525549	-	TDE0030	-	prolipoprotein diacylglyceryl transferase, putative
31	 44.06	+1	38925..39185	-	86	42525550	-	TDE0031	-	hypothetical protein
32	 36.01	0	39321..40067	-	248	42525551	-	TDE0032	-	histidine kinase-related ATPase, putative
33	 34.86	0	40067..40786	-	239	42525552	-	TDE0033	-	DNA-binding response regulator
34	 26.02	-1	40803..41540	-	245	42525553	-	TDE0034	-	hypothetical protein
35	 41.27	0	41670..42110	-	146	42525554	-	TDE0035	-	acetyltransferase
36	 28.50	-1	42225..42617	-	130	42525555	-	TDE0036	-	hypothetical protein
37	 34.54	0	42641..42889	-	82	42525556	-	TDE0037	-	AbrB family transcriptional regulator
38	 47.65	+1	43126..44361	-	411	42525557	fabF	TDE0038	-	3-oxoacyl-(acyl-carrier-protein) synthase II
39	 34.85	0	44579..45763	-	394	42525558	-	TDE0039	-	ISTde1, transposase
40	 43.80	+1	45866..47518	-	550	42525559	-	TDE0040	-	AMP-binding protein
41	 44.00	+1	47637..48695	+	352	42525560	birA	TDE0041	-	birA bifunctional protein
42	 47.72	+1	48816..49823	+	335	42525561	pta	TDE0042	-	phosphate acetyltransferase
43	 42.83	0	49828..51711	+	627	42525562	-	TDE0043	-	TPR domain-containing protein
44	 38.02	0	51750..53222	-	490	42525563	-	TDE0044	-	ABC transporter, ATP-binding protein
45	 35.56	0	53359..55203	-	614	42525564	-	TDE0045	-	ABC transporter, ATP-binding protein
46	 46.26	+1	55298..55939	-	213	42525565	-	TDE0046	-	formiminotransferase-cyclodeaminase family protein
47	 44.69	+1	56010..57251	-	413	42525566	hutI	TDE0047	-	imidazolonepropionase
48	 30.82	-1	57277..57912	-	211	42525567	-	TDE0048	-	hypothetical protein
49	 36.48	0	58289..59179	-	296	42525568	-	TDE0049	-	hypothetical protein
50	 41.32	0	59373..60161	-	262	42525569	-	TDE0050	-	RNA methyltransferase
51	 40.19	0	60163..61314	-	383	42525570	-	TDE0051	-	alcohol dehydrogenase, iron-containing
52	 36.30	0	61445..61714	+	89	42525571	fliQ	TDE0052	-	flagellar biosynthetic protein FliQ
53	 39.25	0	61733..62527	+	264	42525572	fliR	TDE0053	-	flagellar biosynthetic protein FliR
54	 39.13	0	62524..63696	+	390	42525573	flhB	TDE0054	-	flagellar biosynthesis protein FlhB
55	 42.35	0	63705..65801	+	698	42525574	flhA	TDE0055	-	flagellar biosynthesis protein FlhA
56	 40.10	0	65846..66052	+	68	42525575	-	TDE0056	-	DNA-directed RNA polymerase, omega subunit, putative
57	 42.25	0	66075..67061	+	328	42525576	miaA-1	TDE0057	-	tRNA delta(2)-isopentenylpyrophosphate transferase
58	 43.54	+1	67126..67458	+	110	42525577	-	TDE0058	-	hypothetical protein
59	 39.81	0	67434..67541	+	35	42525578	-	TDE0059	-	hypothetical protein
60	 35.26	0	67617..67928	-	103	42525579	-	TDE0060	-	hypothetical protein
61	 37.92	0	67988..69034	-	348	42525580	-	TDE0061	-	fic family protein
62	 39.84	0	69230..69721	+	163	42525581	-	TDE0062	-	PTS system, IIA component
63	 36.46	0	69854..71389	+	511	42525582	-	TDE0063	-	hypothetical protein
64	 42.29	0	71425..72741	-	438	42525583	pfk	TDE0064	-	diphosphate--fructose-6-phosphate 1-phosphotransferase
65	 33.71	0	72912..73436	-	174	42525584	-	TDE0065	-	hypothetical protein
66	 34.69	0	73426..74016	-	196	42525585	-	TDE0066	-	hypothetical protein
67	 40.54	0	74031..75278	-	415	42525586	-	TDE0067	-	cyclic nucleotide-binding protein
68	 42.23	0	75437..76672	+	411	42525587	-	TDE0068	-	succinyl-diaminopimelate desuccinylase
69	 42.48	0	76691..77707	+	338	42525588	-	TDE0069	-	hypothetical protein
70	 34.90	0	77853..78680	+	275	42525589	-	TDE0070	-	sigma-70 family RNA polymerase sigma factor
71	 42.08	0	78742..80982	+	746	42525590	-	TDE0071	-	U32 family peptidase
72	 35.34	0	81061..83199	+	712	42525591	-	TDE0072	-	methyl-accepting chemotaxis protein
73	 35.71	0	83249..84172	-	307	42525592	-	TDE0073	-	riboflavin biosynthesis protein RibF, putative
74	 36.53	0	84246..85589	-	447	42525593	-	TDE0074	-	amino acid permease family protein
75	 41.83	0	85617..86663	-	348	42525594	-	TDE0075	-	sorbitol dehydrogenase, putative
76	 42.36	0	86679..87476	-	265	42525595	-	TDE0076	-	aldolase
77	 37.99	0	87512..88822	-	436	42525596	grdE-1	TDE0077	-	glycine reductase complex proprotein GrdE1
78	 40.84	0	88835..90166	-	443	42525597	grdB-1	TDE0078	-	glycine reductase complex selenoprotein GrdB1
79	 35.42	0	90185..90760	-	191	42525598	-	TDE0079	-	DNA-binding protein
80	 39.60	0	90818..92302	-	494	42525599	gbsA	TDE0080	-	betaine aldehyde dehydrogenase
81	 36.21	0	92643..94031	-	462	42525600	-	TDE0081	-	hypothetical protein
82	 37.74	0	94024..94341	-	105	42525601	-	TDE0082	-	MerR family transcriptional regulator
83	 40.32	0	94344..95774	-	476	42525602	engA	TDE0083	-	GTP-binding protein EngA
84	 39.78	0	95761..97545	-	594	42525603	ptsI	TDE0084	-	phosphoenolpyruvate-protein phosphotransferase
85	 33.27	0	97686..101105	-	1139	42525604	-	TDE0085	-	ATP-dependent DNA helicase UvrD
86	 32.45	0	101129..103966	-	945	42525605	-	TDE0086	-	hypothetical protein
87	 39.26	0	104079..105479	+	466	42525606	trkA	TDE0087	-	potassium transporter peripheral membrane component
88	 42.76	0	105487..106929	+	480	42525607	trkH	TDE0088	-	Trk system potassium uptake protein TrkH
89	 37.98	0	106965..108644	-	559	42525608	-	TDE0089	-	transglutaminase-like domain-containing protein
90	 34.84	0	108634..109296	-	220	42525609	-	TDE0090	-	hypothetical protein
91	 38.31	0	109280..109822	-	180	42525610	-	TDE0091	-	RNA polymerase sigma-24 factor, putative
92	 39.15	0	109867..111345	-	492	42525611	cysS	TDE0092	-	cysteinyl-tRNA synthetase
93	 39.20	0	111397..112368	+	323	42525612	-	TDE0093	-	UDP-N-acetylenolpyruvoylglucosamine reductase, putative
94	 24.00	-2	112359..112508	+	49	42525613	-	TDE0094	-	hypothetical protein
95	 34.03	0	112539..112682	+	47	42525614	-	TDE0095	-	hypothetical protein
96	 40.00	0	112863..114197	+	444	42525615	-	TDE0096	-	NADH oxidase
97	 28.57	-1	114337..114861	+	174	42525616	-	TDE0097	-	hypothetical protein
98	 34.44	0	114932..115651	-	239	42525617	-	TDE0098	-	hypothetical protein
99	 35.35	0	115788..117074	+	428	42525618	-	TDE0099	-	adenine-specific DNA modification methyltransferase
100	 41.30	0	117064..119034	-	656	42525619	-	TDE0100	-	hypothetical protein
37.25	MEAN

5.76	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.