IslandPath Analysis: Klebsiella pneumoniae 342



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 57.01   STD DEV: 6.61
Klebsiella pneumoniae 342, complete genome - 1..5641239
5425 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 56.98	0	19..1422	+	467	206580988	dnaA	KPK_0001	-	chromosomal replication initiator protein DnaA
2	 57.58	0	1427..2527	+	366	206578911	dnaN	KPK_0002	-	DNA polymerase III, beta subunit
3	 57.73	0	2674..3747	+	357	206579462	recF	KPK_0003	-	DNA replication and repair protein RecF
4	 56.94	0	3776..6190	+	804	206576571	gyrB	KPK_0004	-	DNA gyrase, B subunit
5	 55.47	0	6391..7203	+	270	206577542	yidA	KPK_0005	-	sugar-phosphatase, YidA
6	 54.94	0	7413..8435	+	340	206577288	-	KPK_0006	-	hypothetical protein
7	 58.91	0	8432..9565	+	377	206578044	-	KPK_0007	-	outer membrane protein, OMP85 family
8	 61.86	0	9643..10869	+	408	206576272	-	KPK_0008	-	hypothetical protein
9	 57.06	0	10871..11203	-	110	206577046	-	KPK_0009	-	putative lipoprotein
10	 55.80	0	11518..11931	+	137	206579141	ibpA	KPK_0010	-	small heat shock protein IbpA
11	 56.64	0	12048..12476	+	142	206579906	ibpB	KPK_0011	-	small heat shock protein IbpB
12	 60.83	0	12622..14283	+	553	206578756	-	KPK_0013	-	putative permease
13	 58.63	0	14251..14997	-	248	206577984	-	KPK_0012	-	transcriptional regulator, GntR family
14	 60.01	0	15296..16918	+	540	206577068	aglA	KPK_0014	-	PTS system, alpha-glucoside-specific EIICB component
15	 56.69	0	16915..18237	+	440	206577516	aglB_1	KPK_0015	-	maltose-6'-phosphate glucosidase
16	 59.77	0	18338..18685	+	115	206580453	-	KPK_0016	-	hypothetical protein
17	 57.58	0	18675..19037	+	120	206576586	-	KPK_0017	-	hypothetical protein
18	 63.27	0	19034..19534	+	166	206576158	-	KPK_0018	-	hypothetical protein
19	 61.49	0	19538..20869	-	443	206577777	dsdA	KPK_0019	-	D-serine ammonia-lyase
20	 58.67	0	20884..22221	-	445	206577218	dsdX	KPK_0020	-	D-serine permease
21	 59.09	0	22446..23369	+	307	206576703	dsdC	KPK_0021	-	D-serine deaminase transcriptional activator
22	 62.70	0	23489..24673	-	394	206575758	emrD	KPK_0022	-	multidrug resistance protein D
23	 62.71	0	24849..25682	-	277	206577793	-	KPK_0023	-	hypothetical protein
24	 59.28	0	25752..26198	-	148	206578360	-	KPK_0024	-	acetyltransferase, GNAT family
25	 62.50	0	27041..27136	+	31	206578626	ivbL	KPK_0025	-	IlvB leader peptide
26	 61.57	0	27241..28929	+	562	206580429	ilvB	KPK_0026	-	acetolactate synthase, large subunit, isozyme I
27	 51.04	0	28933..29220	+	95	206575897	ilvN	KPK_0027	-	acetolactate synthase, isozyme I, small subunit
28	 62.29	0	29373..29966	+	197	206578067	uhpA	KPK_0028	-	transcriptional regulatory protein UhpA
29	 63.34	0	29963..31465	+	500	206578078	uhpB	KPK_0029	-	sensor protein UhpB
30	 62.00	0	31477..32805	+	442	206579558	uhpC	KPK_0030	-	regulatory protein UhpC
31	 58.26	0	32951..34342	+	463	206578802	uhpT	KPK_0031	-	hexose phosphate transport protein
32	 57.62	0	34479..34931	+	150	206577786	-	KPK_0032	-	hypothetical protein
33	 47.84	-1	35061..35384	-	107	206577197	-	KPK_0033	-	helix-turn-helix DNA-binding domain protein
34	 42.22	-2	35368..35727	-	119	206578953	-	KPK_0034	-	hypothetical protein
35	 60.45	0	35894..37132	+	412	206578439	nepI	KPK_0035	-	nucleoside efflux permease
36	 59.78	0	37297..38676	-	459	206580206	-	KPK_0036	-	putative porin
37	 51.49	0	38821..39123	-	100	206580730	-	KPK_0037	-	PTS system, lactose/cellobiose specific IIA subunit
38	 57.22	0	39221..40543	-	440	206576353	-	KPK_0038	-	PTS system, lactose/cellobiose family IIC subunit
39	 53.65	0	40555..40869	-	104	206576962	-	KPK_0039	-	PTS system, lactose/cellobiose family IIB subunit
40	 58.62	0	41160..42104	+	314	206580584	-	KPK_0040	-	transcriptional regulator, LacI family
41	 60.25	0	42316..43686	+	456	206575719	-	KPK_0041	-	putative 4-hydroxybenzoate transporter
42	 58.12	0	43700..44962	+	420	206579972	-	KPK_0043	-	protocatechuate 4,5-dioxygenase, alpha subunit
43	 62.75	0	44959..46185	-	408	206579393	-	KPK_0042	-	transcriptional regulator, LysR family
44	 59.65	0	46313..47053	+	246	206578257	-	KPK_0044	-	GlcNAc-PI de-N-acetylase family protein
45	 63.31	0	47050..47763	+	237	206579096	ligK	KPK_0045	-	4-carboxy-4-hydroxy-2-oxoadipate aldolase/oxaloacetate decarboxylase
46	 64.64	+1	47764..48849	+	361	206576932	-	KPK_0046	-	putative fldA protein
47	 62.15	0	48852..49715	+	287	206576885	-	KPK_0047	-	putative oxidoreductase, NAD-binding
48	 55.43	0	49719..49994	-	91	206577615	-	KPK_0048	-	hypothetical protein
49	 62.02	0	50116..51018	-	300	206578384	-	KPK_0049	-	putative transport protein
50	 63.38	0	51170..52600	-	476	206576235	murP	KPK_0050	-	PTS system, N-acetylmuramic acid-specific EIIBC component
51	 62.02	0	52625..53527	-	300	206575804	murQ	KPK_0051	-	N-acetylmuramic acid 6-phosphate etherase
52	 63.92	+1	53690..54853	-	387	206579124	-	KPK_0052	-	drug resistance transporter, Bcr/CflA subfamily
53	 64.69	+1	54899..56263	-	454	206580081	eefC	KPK_0053	-	multidrug efflux transporter EefC
54	 63.58	0	56267..59374	-	1035	206578026	eefB	KPK_0054	-	multidrug efflux permease EefB
55	 62.67	0	59374..60498	-	374	206578875	eefA	KPK_0055	-	multidrug efflux transporter EefA
56	 29.27	-2	60705..60827	+	40	206579940	-	KPK_0057	-	hypothetical protein
57	 34.19	-2	60787..60903	-	38	206576740	-	KPK_0056	-	hypothetical protein
58	 56.83	0	60878..61294	+	138	206578755	-	KPK_0058	-	acetyltransferase, GNAT family
59	 60.65	0	61396..62043	-	215	206579332	-	KPK_0059	-	transcriptional regulator, TetR family
60	 62.65	0	62124..63617	+	497	206578230	-	KPK_0061	-	drug resistance MFS transporter, drug:H+ antiporter-1 (DHA2) family
61	 65.46	+1	63614..64528	-	304	206577630	-	KPK_0060	-	transcriptional regulator, LysR family
62	 61.43	0	64624..65253	+	209	206578933	-	KPK_0062	-	pyridoxamine 5'-phosphate oxidase family protein
63	 60.30	0	65253..65723	+	156	206579478	-	KPK_0063	-	hypothetical protein
64	 60.34	0	65744..66280	-	178	206577339	-	KPK_0064	-	putative peroxidase
65	 67.00	+1	66397..67302	+	301	206578276	-	KPK_0065	-	transcriptional regulator, AraC family
66	 58.64	0	67430..68239	+	269	206577779	nlpA	KPK_0066	-	lipoprotein NlpA
67	 63.27	0	68264..69118	+	284	206578342	-	KPK_0068	-	hypothetical protein
68	 61.14	0	69108..69668	-	186	206578673	-	KPK_0067	-	putative ADP-ribose pyrophosphatase
69	 60.64	0	69836..70615	+	259	206577111	-	KPK_0069	-	hypothetical protein
70	 64.68	+1	70637..71590	+	317	206576244	-	KPK_0071	-	transcriptional regulator, AraC family
71	 62.86	0	71587..72636	-	349	206576842	-	KPK_0070	-	oxidoreductase, zinc-binding dehydrogenase family
72	 52.07	0	72959..73705	+	248	206577931	-	KPK_0072	-	hypothetical protein
73	 63.57	0	73757..74047	-	96	206577125	-	KPK_0073	-	antibiotic biosynthesis monooxygenase domain protein
74	 64.38	+1	74049..75056	-	335	206576123	-	KPK_0074	-	zinc-binding alcohol dehydrogenase family protein
75	 58.97	0	75169..75636	-	155	206576014	-	KPK_0075	-	hypothetical protein
76	 59.35	0	76191..77585	+	464	206580308	-	KPK_0077	-	sugar transporter, glycoside-pentoside-hexuronide (GPH):cation symporter family
77	 60.24	0	77598..79916	+	772	206580909	yicI	KPK_0078	-	alpha-xylosidase
78	 52.97	0	80075..80797	+	240	206575989	-	KPK_0079	-	transcriptional regulator, RpiR family
79	 56.52	0	81707..83086	-	459	206577985	-	KPK_0080	-	glycosyl hydrolase, family 4
80	 53.97	0	83099..84658	-	519	206577556	-	KPK_0081	-	PTS system, IIBC component
81	 62.96	0	84909..86606	-	565	206579773	-	KPK_0082	-	AsmA family protein
82	 60.63	0	86747..88138	-	463	206581086	-	KPK_0083	-	xanthine permease
83	 60.68	0	88423..89625	+	400	206580320	gltS	KPK_0084	-	sodium/glutamate symporter
84	 59.39	0	89740..91251	-	503	206579874	glpK	KPK_0085	-	glycerol kinase
85	 59.27	0	91273..92124	-	283	206576708	glpF	KPK_0086	-	glycerol uptake facilitator protein
86	 50.00	-1	92567..92812	+	81	206576869	-	KPK_0087	-	hypothetical protein
87	 55.66	0	92964..93953	+	329	206576596	sbp	KPK_0088	-	sulfate-binding protein
88	 61.83	0	94123..94887	+	254	206579576	cdh	KPK_0089	-	CDP-diacylglycerol pyrophosphatase
89	 62.84	0	94952..96256	+	434	206578836	-	KPK_0090	-	sodium:sulfate symporter family protein
90	 57.16	0	96349..97116	-	255	206581122	tpiA	KPK_0091	-	triosephosphate isomerase
91	 56.50	0	97226..97825	-	199	206580296	-	KPK_0092	-	hypothetical protein
92	 60.37	0	97938..98366	+	142	206580307	-	KPK_0093	-	hypothetical protein
93	 59.97	0	98367..99113	-	248	206575838	fpr	KPK_0094	-	ferredoxin--NADP(+) reductase
94	 60.83	0	99264..100274	-	336	206577819	glpX	KPK_0095	-	fructose-1,6-bisphosphatase, class II
95	 62.54	0	100325..102406	-	693	206577391	recG	KPK_0096	-	ATP-dependent DNA helicase RecG
96	 61.30	0	102412..103101	-	229	206577394	trmH	KPK_0097	-	tRNA guanosine-2'-O-methyltransferase
97	 57.33	0	103106..105226	-	706	206579714	spoT	KPK_0098	-	guanosine-3',5'-bis(diphosphate) 3'-diphosphatase
98	 53.62	0	105245..105520	-	91	206580733	rpoZ	KPK_0099	-	DNA-directed RNA polymerase, omega subunit
99	 54.81	0	105575..106198	-	207	206580871	gmk	KPK_0100	-	guanylate kinase
100	 63.98	+1	106456..108132	+	558	206576543	ligB	KPK_0101	-	NAD(+)-dependent DNA ligase LigB
57.01	MEAN

6.61	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.