IslandPath Analysis: Flavobacterium psychrophilum JIP02/86



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 32.65   STD DEV: 3.83
Flavobacterium psychrophilum JIP02/86, complete genome - 1..2861988
2412 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 31.98	0	575..3907	+	1110	150024115	-	FP0001	-	putative chromosome segregation ATPase
2	 31.68	0	3900..4322	+	140	150024116	-	FP0002	-	hypothetical protein
3	 36.65	+1	4533..6404	+	623	150024117	gidA	FP0003	-	tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
4	 30.51	0	6568..7416	+	282	150024118	-	FP0004	-	SAM-dependent methyltransferase
5	 34.57	0	7680..8243	+	187	150024119	-	FP0005	-	OmpH family outer membrane protein
6	 39.98	+1	9077..11557	+	826	150024120	-	FP0006	-	hypothetical protein
7	 35.18	0	11900..14173	+	757	150024121	-	FP0007	-	helicase
8	 26.27	-1	15024..15575	-	183	150024122	-	FP0008	-	hypothetical protein
9	 27.06	-1	15631..16140	-	169	150024123	-	FP0009	-	cAMP-binding protein
10	 37.24	+1	16177..16560	-	127	150024124	-	FP0010	-	hypothetical protein
11	 35.07	0	16691..17839	-	382	150024125	holB	FP0011	-	DNA polymerase III, delta prime subunit
12	 32.88	0	18268..18705	+	145	150024126	-	FP0012	-	hypothetical protein
13	 32.56	0	18740..20032	+	430	150024127	-	FP0013	-	hypothetical protein
14	 35.01	0	20165..21598	+	477	150024128	sprC	FP0014	-	putative adhesin precursor SprC
15	 40.40	+2	21600..25460	+	1286	150024129	sprD	FP0015	-	putative cell surface protein precursor SprD
16	 36.97	+1	25572..35549	+	3325	150024130	sprB	FP0016	-	putative adhesin precursor SprB
17	 35.39	0	35596..36567	+	323	150024131	-	FP0017	-	hypothetical protein
18	 36.87	+1	36696..37883	+	395	150024132	pgk	FP0018	-	phosphoglycerate kinase
19	 31.14	0	37989..40085	+	698	150024133	mltD	FP0019	-	membrane-bound lytic murein transglycosylase D precursor
20	 33.56	0	40142..40591	+	149	150024134	elaA	FP0020	-	ElaA protein
21	 30.53	0	40588..41406	-	272	150024135	-	FP0021	-	OmpA family outer membrane protein
22	 32.89	0	42033..43391	+	452	150024136	yceA	FP0022	-	hypothetical protein
23	 37.50	+1	43562..44953	+	463	150024137	-	FP0023	-	hypothetical protein
24	 30.02	0	44928..45440	+	170	150024138	gldH	FP0024	-	gliding motility protein GldH
25	 39.74	+1	45446..47770	+	774	150024139	mrcA	FP0025	-	penicillin-binding protein 1A
26	 41.92	+2	47939..48637	+	232	150024140	atoD	FP0026	-	3-oxoacid CoA-transferase subunit A family protein AtoD
27	 25.36	-1	48654..51689	+	1011	150024141	-	FP0027	-	type I endonuclease-methyltransferase fusion protein
28	 23.83	-2	51689..52309	+	206	150024142	-	FP0028	-	hypothetical protein
29	 31.31	0	52314..52511	+	65	150024143	-	FP0029	-	hypothetical protein
30	 39.27	+1	52601..53257	+	218	150024144	atoA	FP0030	-	3-oxoacid CoA-transferase subunit B family protein AtoA
31	 34.38	0	53852..55291	-	479	150024145	-	FP0031	-	transmembrane protein of unknown function
32	 32.49	0	55407..56120	-	237	150024146	-	FP0032	-	hypothetical protein
33	 38.85	+1	56226..56696	-	156	150024147	ogt1	FP0033	-	methylated-DNA--[protein]-cysteineS-methyltransf erase
34	 30.56	0	56980..57375	-	131	150024148	-	FP0034	-	cytochrome c551/c552 family protein
35	 39.38	+1	57616..58608	-	330	150024149	hemB	FP0035	-	delta-aminolevulinic acid dehydratase
36	 28.50	-1	58613..59647	-	344	150024150	-	FP0036	-	hypothetical protein
37	 38.32	+1	59655..60557	-	300	150024151	hemF	FP0037	-	coproporphyrinogen III oxidase
38	 34.04	0	60559..61122	-	187	150024152	-	FP0038	-	hypothetical protein
39	 27.59	-1	61126..61647	-	173	150024153	-	FP0039	-	ribosomal-protein-amino-adic N-acetyltransferase
40	 28.36	-1	61656..62459	-	267	150024154	-	FP0040	-	hypothetical protein
41	 38.60	+1	62500..63525	-	341	150024155	hemE	FP0041	-	uroporphyrinogen decarboxylase
42	 30.02	0	63605..64267	-	220	150024156	hemD	FP0042	-	uroporphyrinogen-III synthase
43	 36.79	+1	64267..65193	-	308	150024157	hemC	FP0043	-	hydroxymethylbilane synthase
44	 33.25	0	65262..66503	-	413	150024158	hemA	FP0044	-	glutamyl-tRNA reductase
45	 30.91	0	66733..67599	+	288	150024159	-	FP0045	-	AraC family transcriptional regulator
46	 37.84	+1	67603..68622	+	339	150024160	hemH	FP0046	-	ferrochelatase
47	 30.76	0	68655..69197	+	180	150024161	-	FP0047	-	transmembrane protein of unknown function
48	 32.66	0	69198..70673	+	491	150024162	-	FP0048	-	two-component system sensor histidine kinase
49	 37.16	+1	70677..71459	+	260	150024163	crt	FP0049	-	3-hydroxybutyryl-CoA dehydratase
50	 33.02	0	71468..72115	-	215	150024164	-	FP0050	-	hydrolase
51	 34.95	0	72187..73176	-	329	150024165	-	FP0051	-	putative acyl-[acyl-carrier-protein] desaturase
52	 33.61	0	73212..73946	-	244	150024166	plsC	FP0052	-	1-acylglycerol-3-phosphate O-acyltransferase
53	 40.88	+2	74027..74437	-	136	150024167	yqiW	FP0053	-	hypothetical protein
54	 33.19	0	74600..75289	-	229	150024168	-	FP0054	-	hydrolase, haloacid dehalogenase family protein
55	 38.48	+1	75344..77404	-	686	150024169	metG	FP0055	-	methionyl-tRNA synthetase
56	 29.06	0	77725..77958	+	77	150024170	-	FP0056	-	hypothetical protein
57	 25.20	-1	77964..78983	+	339	150024171	-	FP0057	-	hypothetical protein
58	 35.84	0	79010..79966	+	318	150024172	-	FP0058	-	putative carboxypeptidase
59	 30.45	0	80045..80425	+	126	150024173	-	FP0059	-	hypothetical protein
60	 32.95	0	80426..81466	-	346	150024174	tas	FP0060	-	aldo/keto reductase family oxidoreductase TAS
61	 35.62	0	81601..82563	-	320	150024175	-	FP0061	-	flagellar motor/chemotaxis (MotB)-related protein
62	 37.14	+1	82634..83395	-	253	150024176	xth	FP0062	-	exodeoxyribonuclease III
63	 35.16	0	83592..85397	+	601	150024177	-	FP0063	-	putative hemolysin
64	 38.70	+1	85671..86657	-	328	150024178	-	FP0064	-	putative phosphoglycerate dehydrogenase
65	 23.49	-2	86681..87361	-	226	150024179	-	FP0065	-	hypothetical protein
66	 40.93	+2	87577..88353	-	258	150024180	proC	FP0066	-	pyrroline-5-carboxylate reductase
67	 35.56	0	88364..89713	-	449	150024181	mgtE	FP0067	-	Mg2+ transporter MgtE
68	 33.97	0	89703..90482	-	259	150024182	ksgA	FP0068	-	dimethyladenosine transferase
69	 28.65	-1	90515..91411	-	298	150024183	-	FP0069	-	hypothetical protein
70	 32.70	0	91576..91890	-	104	150024184	-	FP0070	-	hypothetical protein
71	 31.25	0	91963..93741	-	592	150024185	-	FP0071	-	hypothetical protein
72	 36.08	0	93976..95247	-	423	150024186	serS	FP0072	-	seryl-tRNA synthetase
73	 35.85	0	95459..96691	-	410	150024187	-	FP0073	-	hypothetical protein
74	 31.52	0	96688..97128	-	146	150024188	-	FP0074	-	hypothetical protein
75	 38.51	+1	97130..98308	-	392	150024189	-	FP0075	-	lipoprotein precursor
76	 34.94	0	98399..100270	+	623	150024190	mntH	FP0076	-	manganese transport protein mntH
77	 33.18	0	100564..101217	+	217	150024191	sirR	FP0077	-	metal-dependent transcriptional regulator
78	 36.59	+1	101843..102334	-	163	150024192	-	FP0078	-	hypothetical protein
79	 34.85	0	102595..103188	+	197	150024193	-	FP0079	-	hypothetical protein
80	 33.41	0	103517..104851	-	444	150024194	-	FP0081	-	M50 family membrane-associated zinc metalloprotease precursor
81	 37.22	+1	104938..106866	-	642	150024195	-	FP0082	-	M1 family metalloprotease precursor
82	 34.65	0	107000..107380	-	126	150024196	-	FP0083	-	hypothetical protein
83	 29.89	0	108187..108534	+	115	150024197	-	FP0084	-	hypothetical protein
84	 35.04	0	108535..109356	+	273	150024198	yeeZ	FP0085	-	sugar metabolism protein YeeZ
85	 36.49	+1	109411..111471	-	686	150024199	pepO	FP0086	-	M13 family metallopeptidase PepO precursor
86	 36.52	+1	111474..114893	-	1139	150024200	-	FP0087	-	glycosyl hydrolase
87	 30.58	0	114965..115690	+	241	150024201	-	FP0088	-	cytochrome c oxidase biogenesis protein
88	 31.28	0	115786..116028	+	80	150024202	feoA	FP0089	-	ferrous iron transport protein A
89	 33.33	0	116028..118121	+	697	150024203	feoB	FP0090	-	ferrous iron transport protein B
90	 30.30	0	118720..118884	-	54	150024204	-	FP0091	-	hypothetical protein
91	 31.98	0	119212..119877	+	221	150024205	sdhC	FP0092	-	succinate dehydrogenase, cytochrome b subunit
92	 37.51	+1	119887..121896	+	669	150024206	sdhA	FP0093	-	succinate dehydrogenase flavoprotein subunit
93	 25.87	-1	121990..122364	+	124	150024207	-	FP0094	-	hypothetical protein
94	 37.52	+1	122423..123187	+	254	150024208	sdhB	FP0095	-	succinate dehydrogenase/fumarate reductase iron-sulfur subunit
95	 33.91	0	123664..124533	+	289	150024209	-	FP0096	-	hypothetical protein
96	 33.77	0	124551..125699	+	382	150024210	fmo	FP0097	-	flavomodulin
97	 32.62	0	126179..127996	-	605	150024211	-	FP0099	-	hypothetical protein
98	 31.49	0	128126..130081	-	651	150024212	-	FP0100	-	penicillin-binding protein
99	 35.85	0	130088..130603	-	171	150024213	-	FP0101	-	hypothetical protein
100	 28.12	-1	130611..130898	-	95	150024214	-	FP0102	-	hypothetical protein
32.65	MEAN

3.83	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.