IslandPath Analysis: Burkholderia mallei NCTC 10229



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 68.51   STD DEV: 5.10
Burkholderia mallei NCTC 10229 chromosome II, complete sequence - 1..2284095
2177 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 68.06	0	5..76	+	23	124382674	-	BMA10229_0001	-	hypothetical protein
2	 64.04	0	115..228	+	37	124382075	-	BMA10229_0002	-	hypothetical protein
3	 61.75	-1	6230..7063	-	277	124381451	-	BMA10229_0008	-	IS407A, transposase OrfB
4	 56.82	-2	7087..7350	-	87	124382832	-	BMA10229_0009	-	IS407A, transposase OrfA
5	 69.59	0	7496..7906	-	136	124382480	-	BMA10229_0010	-	glcG protein
6	 68.52	0	7966..9366	-	466	124381613	-	BMA10229_0011	-	hypothetical protein
7	 65.72	0	9363..10205	-	280	124381271	-	BMA10229_0012	-	OFeT family iron transporter
8	 64.55	0	10265..10594	-	109	124382630	-	BMA10229_0013	-	hypothetical protein
9	 63.59	0	10654..11205	-	183	124382013	-	BMA10229_0014	-	putative antigen
10	 64.60	0	11429..13552	-	707	124381502	uvrB	BMA10229_0015	-	excinuclease ABC subunit B
11	 66.50	0	13807..15006	+	399	124383084	tyrB-2	BMA10229_0016	-	aromatic amino acid aminotransferase
12	 63.59	0	15120..16613	+	497	124381924	-	BMA10229_0017	-	ISBma2, transposase
13	 65.91	0	16818..17606	-	262	124381292	bdhA-2	BMA10229_0018	-	3-hydroxybutyrate dehydrogenase
14	 61.83	-1	17794..18765	+	323	124381156	-	BMA10229_0019	-	aldo/keto reductase family oxidoreductase
15	 59.93	-1	18914..19759	+	281	124383002	-	BMA10229_0020	-	hypothetical protein
16	 64.87	0	19772..20050	-	92	124382711	-	BMA10229_0021	-	hypothetical protein
17	 56.82	-2	20210..20473	+	87	124381776	-	BMA10229_0022	-	transposase
18	 61.75	-1	20497..21330	+	277	124381989	-	BMA10229_0023	-	IS1404 transposase
19	 64.56	0	21893..22177	-	94	124381505	-	BMA10229_0025	-	hypothetical protein
20	 61.75	-1	22199..23032	-	277	124382506	-	BMA10229_0026	-	IS407A, transposase OrfB
21	 56.82	-2	23056..23319	-	87	124382990	-	BMA10229_0027	-	IS407A, transposase OrfA
22	 74.45	+1	23385..23795	-	136	124381493	-	BMA10229_0028	-	hypothetical protein
23	 66.78	0	23996..24910	-	304	124382023	glsA	BMA10229_0029	-	glutaminase
24	 66.10	0	24955..25308	+	117	124382771	-	BMA10229_0030	-	hypothetical protein
25	 65.68	0	25431..26141	+	236	124382327	-	BMA10229_0031	-	DNA-binding response regulator
26	 76.10	+1	26186..26344	-	52	124382802	-	BMA10229_0032	-	hypothetical protein
27	 69.20	0	26343..27644	+	433	124381414	-	BMA10229_0033	-	sensor histidine kinase
28	 69.77	0	27981..30812	-	943	124381879	-	BMA10229_0034	-	OMP85 family outer membrane protein
29	 71.37	0	31031..32179	+	382	124382635	-	BMA10229_0035	-	putative rod shape-determining protein MreB
30	 68.44	0	32231..32455	-	74	124381999	-	BMA10229_0036	-	cytochrome c4 family protein
31	 69.79	0	32562..33266	+	234	124382747	-	BMA10229_0037	-	HD domain-containing protein
32	 73.14	0	33367..35697	+	776	124383205	-	BMA10229_0038	-	amylo-alpha-1,6-glucosidase
33	 68.18	0	35793..36056	+	87	124381906	-	BMA10229_0039	-	hypothetical protein
34	 71.60	0	36292..36534	-	80	124382246	-	BMA10229_0040	-	hypothetical protein
35	 71.89	0	36534..37394	-	286	124382919	-	BMA10229_0041	-	putative lyase
36	 70.68	0	37397..37645	-	82	124381604	-	BMA10229_0042	-	hypothetical protein
37	 67.09	0	37644..38120	+	158	124382221	-	BMA10229_0043	-	glyoxalase family protein
38	 71.16	0	38167..39078	+	303	124382591	-	BMA10229_0044	-	putative glutathione S-transferase
39	 70.60	0	39119..39829	+	236	124381302	-	BMA10229_0045	-	hypothetical protein
40	 66.67	0	40044..40175	+	43	124381562	-	BMA10229_0046	-	hypothetical protein
41	 73.50	0	41153..41269	+	38	124383150	-	BMA10229_0047	-	hypothetical protein
42	 57.14	-2	41377..41502	+	41	124382526	-	BMA10229_0048	-	hypothetical protein
43	 72.75	0	41737..43116	-	459	124381820	-	BMA10229_0049	-	sensor histidine kinase
44	 70.44	0	43113..43775	-	220	124383153	-	BMA10229_0050	-	DNA-binding response regulator
45	 70.38	0	43936..44796	+	286	124382930	-	BMA10229_0051	-	RpiR family phosphosugar-binding transcriptional regulator
46	 62.22	-1	45182..45451	+	89	124382464	-	BMA10229_0052	-	hypothetical protein
47	 63.42	0	45668..46006	-	112	124381632	-	BMA10229_0053	-	putative immunity protein
48	 69.23	0	46096..46563	-	155	124382925	-	BMA10229_0054	-	rhodanese-like domain-containing protein
49	 72.31	0	46670..47626	+	318	124382606	ftrA	BMA10229_0055	-	transcriptional activator FtrA
50	 67.56	0	47885..48109	+	74	124381382	-	BMA10229_0056	-	hypothetical protein
51	 68.39	0	48194..48658	+	154	124381421	-	BMA10229_0057	-	hypothetical protein
52	 69.90	0	48722..50173	+	483	124383144	-	BMA10229_0058	-	M20/M25/M40 family peptidase
53	 73.50	0	50170..50286	+	38	124382681	-	BMA10229_0059	-	hypothetical protein
54	 71.27	0	50283..50651	+	122	124382186	-	BMA10229_0060	-	hypothetical protein
55	 68.39	0	50887..51756	+	289	124381410	-	BMA10229_0061	-	hypothetical protein
56	 53.73	-2	51814..52014	+	66	124382868	-	BMA10229_0062	-	hypothetical protein
57	 69.29	0	52033..52299	+	88	124383177	-	BMA10229_0063	-	hypothetical protein
58	 58.01	-2	52542..52853	+	103	124381891	-	BMA10229_0064	-	hypothetical protein
59	 61.54	-1	53470..55206	+	578	124382136	-	BMA10229_0065	-	x-prolyl-dipeptidyl aminopeptidase
60	 59.26	-1	55586..56557	+	323	124382611	-	BMA10229_0066	-	hypothetical protein
61	 57.20	-2	56588..56851	+	87	124383311	-	BMA10229_0067	-	transposase
62	 61.63	-1	56875..57708	+	277	124381611	-	BMA10229_0068	-	IS1404 transposase
63	 53.51	-2	57719..58288	-	189	124382412	-	BMA10229_0069	-	peptidase
64	 70.27	0	58623..59261	+	212	124381150	-	BMA10229_0070	-	hypothetical protein
65	 70.11	0	59541..60875	-	444	124381746	-	BMA10229_0071	-	hypothetical protein
66	 68.78	0	60948..61136	-	62	124382358	-	BMA10229_0072	-	hypothetical protein
67	 69.03	0	61187..62584	-	465	124383296	-	BMA10229_0073	-	EmrB/QacA family drug resistance transporter
68	 81.43	+2	62661..63107	-	148	124383269	-	BMA10229_0074	-	hypothetical protein
69	 67.63	0	63088..64956	+	622	162320516	-	BMA10229_0075	-	trehalase
70	 64.33	0	65357..66169	+	270	124381488	-	BMA10229_0076	-	hypothetical protein
71	 68.10	0	66198..66827	+	209	124382957	-	BMA10229_0077	-	cytochrome c oxidase, subunit III family protein
72	 69.64	0	66849..67151	+	100	124382774	-	BMA10229_0078	-	hypothetical protein
73	 70.73	0	67243..68202	-	319	124381986	-	BMA10229_0079	-	LuxR family transcriptional regulator
74	 73.12	0	68266..68451	-	61	124382550	-	BMA10229_0080	-	hypothetical protein
75	 71.39	0	68657..69481	+	274	124382195	-	BMA10229_0081	-	ATP-dependent transcription regulator LuxR
76	 70.02	0	69699..71669	+	656	124381579	asnB-1	BMA10229_0082	-	asparagine synthase (glutamine-hydrolyzing)
77	 73.61	+1	71721..71936	-	71	124381211	-	BMA10229_0083	-	hypothetical protein
78	 69.08	0	72289..72702	-	137	124383042	-	BMA10229_0084	-	hypothetical protein
79	 72.63	0	72810..75041	-	743	124382301	iorB	BMA10229_0085	-	isoquinoline 1-oxidoreductase, beta subunit
80	 69.91	0	75044..75505	-	153	124381863	iorA	BMA10229_0086	-	isoquinoline 1-oxidoreductase, alpha subunit
81	 70.02	0	75706..76689	+	327	124382849	-	BMA10229_0088	-	AraC family transcriptional regulator
82	 74.65	+1	76680..76892	-	70	124381391	-	BMA10229_0087	-	hypothetical protein
83	 64.66	0	76910..77308	+	132	124381801	-	BMA10229_0089	-	hypothetical protein
84	 64.43	0	77740..78096	-	118	124381789	-	BMA10229_0090	-	hypothetical protein
85	 69.57	0	78501..79739	+	412	124381199	-	BMA10229_0091	-	acyl-CoA dehydrogenase domain-containing protein
86	 73.00	0	79744..80958	+	404	124383058	-	BMA10229_0092	-	acyl-CoA dehydrogenase domain-containing protein
87	 70.09	0	81046..82449	+	467	124382064	-	BMA10229_0093	-	monoxygenase
88	 71.67	0	82534..82653	+	39	124383277	-	BMA10229_0094	-	hypothetical protein
89	 70.35	0	82725..84053	-	442	124382718	-	BMA10229_0095	-	sensor histidine kinase
90	 68.60	0	84054..84776	-	240	124382030	-	BMA10229_0096	-	DNA-binding response regulator
91	 67.34	0	85017..85763	+	248	124382390	-	BMA10229_0097	-	hypothetical protein
92	 72.47	0	85787..86974	+	395	124382845	-	BMA10229_0098	-	NAD-dependent epimerase/dehydratase family protein
93	 64.16	0	87018..87455	-	145	124381378	hpaR	BMA10229_0099	-	homoprotocatechuate degradative operon repressor
94	 70.82	0	87612..88310	+	232	124381279	-	BMA10229_0100	-	4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase, N-terminal subunit
95	 68.24	0	88307..89071	+	254	124381926	-	BMA10229_0101	-	4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase, C-terminal subunit
96	 68.31	0	89095..90558	+	487	124383308	hpaE	BMA10229_0102	-	5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase
97	 66.78	0	90628..91476	+	282	124381625	hpaD	BMA10229_0103	-	3,4-dihydroxyphenylacetate 2,3-dioxygenase
98	 65.39	0	91534..91926	+	130	124382518	hpaF	BMA10229_0104	-	5-carboxymethyl-2-hydroxymuconate delta isomerase
99	 67.41	0	91949..92752	+	267	124382939	hpaH	BMA10229_0105	-	2-oxo-hepta-3-ene-1,7-dioic acid hydratase
100	 73.19	0	93504..94346	-	280	124381593	-	BMA10229_0106	-	AraC family transcriptional regulator
68.51	MEAN

5.10	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.