IslandPath Analysis: Staphylococcus epidermidis RP62A



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 32.10   STD DEV: 3.66
Staphylococcus epidermidis RP62A, complete genome - 1..2616530
2494 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 37.68	+1	540..677	+	45	57865940	rpmH	SERP0001	-	50S ribosomal protein L34
2	 30.75	0	836..1183	+	115	57865941	rnpA	SERP0002	-	ribonuclease P
3	 34.86	0	1329..2708	+	459	57865942	trmE	SERP0003	-	tRNA modification GTPase TrmE
4	 35.62	0	2781..4658	+	625	57865943	gidA	SERP0004	-	tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
5	 33.61	0	4658..5377	+	239	57865944	gidB	SERP0005	-	glucose-inhibited division protein B
6	 33.69	0	5421..6260	+	279	57865945	-	SERP0006	-	ParB family chromosome partioning protein
7	 25.85	-1	6313..6459	-	48	57865954	-	SERP0007	-	hypothetical protein
8	 24.07	-2	6522..6683	+	53	57865955	-	SERP0008	-	hypothetical protein
9	 34.72	0	6661..7020	+	119	57865956	-	SERP0009	-	hypothetical protein
10	 36.11	+1	7036..7431	+	131	57865957	-	SERP0010	-	hypothetical protein
11	 26.67	-1	7397..7936	+	179	57865958	-	SERP0011	-	transcriptional regulator, putative
12	 27.19	-1	8156..8725	+	189	57865959	-	SERP0012	-	Cro/CI family transcriptional regulator
13	 28.41	-1	8913..9542	-	209	57865960	-	SERP0013	-	hypothetical protein
14	 32.08	0	9780..10898	+	372	57865961	-	SERP0014	-	RND efflux transporter
15	 34.06	0	10895..11581	+	228	57865968	-	SERP0015	-	ABC transporter, ATP-binding protein
16	 34.75	0	11574..12770	+	398	57865969	-	SERP0016	-	ABC transporter, permease protein
17	 31.18	0	12806..12898	+	30	57865970	-	SERP0017	-	hypothetical protein
18	 35.09	0	13768..15813	+	681	57865971	-	SERP0018	-	lipase, putative
19	 28.65	0	15885..16076	-	63	57865972	-	SERP0019	-	hypothetical protein
20	 29.03	0	16121..18001	-	626	57865973	-	SERP0020	-	ABC transporter, permease protein
21	 34.91	0	17991..18749	-	252	57865974	-	SERP0021	-	ABC transporter, ATP-binding protein
22	 29.40	0	19043..19423	+	126	57865975	-	SERP0022	-	hypothetical protein
23	 43.97	+2	19519..19659	-	46	57865976	-	SERP0023	-	hypothetical protein
24	 32.82	0	20149..20727	+	192	57865986	-	SERP0024	-	signal peptidase I
25	 35.16	0	20789..22153	-	454	57865987	-	SERP0025	-	major facilitator family transporter
26	 39.53	+2	23557..23814	+	85	57865988	-	SERP0026	-	sdrF protein, truncation
27	 35.29	0	23740..23994	-	84	57865989	-	SERP0027	-	ABC transporter, ATP-binding protein, truncation
28	 30.20	0	24022..24756	-	244	57865990	-	SERP0028	-	hypothetical protein
29	 36.27	+1	24753..24956	-	67	57865991	-	SERP0029	-	Cro/CI family transcriptional regulator
30	 30.35	0	25242..25442	+	66	57865992	-	SERP0030	-	hypothetical protein
31	 23.66	-2	25560..25652	-	30	57865993	-	SERP0031	-	hypothetical protein
32	 39.32	+1	26288..27472	+	394	57866008	-	SERP0032	-	acetyl-CoA acetyltransferase
33	 35.48	0	27690..28433	-	247	57866009	-	SERP0033	-	cyclase, putative
34	 34.85	0	28455..30701	-	748	57865964	metE	SERP0034	-	5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase
35	 36.22	+1	30698..32536	-	612	57865965	-	SERP0035	-	bifunctional homocysteine S-methyltransferase/5,10-methylenetetrahydrofolate reductase protein
36	 38.69	+1	32490..33665	-	391	57865966	-	SERP0036	-	trans-sulfuration enzyme family protein
37	 34.69	0	33662..34765	-	367	57865967	-	SERP0037	-	trans-sulfuration enzyme family protein
38	 34.64	0	35494..36336	+	280	57865977	-	SERP0038	-	spoOJ protein
39	 31.16	0	36497..37372	+	291	57865978	-	SERP0039	-	hypothetical protein
40	 33.82	0	37393..37596	+	67	57865979	-	SERP0040	-	hypothetical protein
41	 36.34	+1	37608..38705	+	365	57865980	-	SERP0041	-	translation-associated GTPase
42	 32.81	0	38938..39129	-	63	57865981	-	SERP0042	-	hypothetical protein
43	 32.96	0	39203..40012	-	269	57865982	-	SERP0043	-	lysozyme domain-containing protein
44	 33.00	0	40397..40693	+	98	57865983	rpsF	SERP0044	-	30S ribosomal protein S6
45	 38.63	+1	40716..41225	+	169	57865984	ssb	SERP0045	-	single-stranded DNA-binding protein
46	 37.86	+1	41270..41512	+	80	57865985	rpsR	SERP0046	-	30S ribosomal protein S18
47	 24.52	-2	41982..42242	-	86	57865994	-	SERP0048	-	hypothetical protein
48	 31.37	0	42464..42718	+	84	57865995	-	SERP0049	-	hypothetical protein
49	 29.17	0	42835..42930	+	31	57865996	-	SERP0050	-	hypothetical protein
50	 27.96	-1	43190..43822	+	210	57865997	-	SERP0051	-	amino acid transporter LysE
51	 31.98	0	43843..44433	+	196	57865998	-	SERP0052	-	phosphoglycerate mutase family protein
52	 33.33	0	44849..45079	-	76	57865999	-	SERP0054	-	hypothetical protein
53	 21.21	-2	45180..45278	+	32	57866000	-	SERP0055	-	hypothetical protein
54	 31.75	0	45300..45425	+	41	57866001	-	SERP0056	-	hypothetical protein
55	 29.49	0	45446..46069	-	207	57866002	-	SERP0057	-	hypothetical protein
56	 25.58	-1	46212..46340	+	42	57866003	-	SERP0058	-	hypothetical protein
57	 37.99	+1	46330..47853	-	507	57866004	ahpF	SERP0059	-	alkyl hydroperoxide reductase, F subunit
58	 37.54	+1	47868..48437	-	189	57866005	ahpC	SERP0060	-	alkyl hydroperoxide reductase, C subunit
59	 33.59	0	48882..49661	-	259	57866006	-	SERP0061	-	2-keto-4-pentenoate hydratase, putative
60	 35.85	+1	49802..50557	+	251	57866007	-	SERP0062	-	NAD(P)H-flavin oxidoreductase, putative
61	 36.65	+1	50679..52067	-	462	57866016	-	SERP0063	-	sodium:dicarboxylate symporter family protein
62	 34.55	0	52376..53278	-	300	57866017	-	SERP0064	-	hypothetical protein
63	 30.63	0	53404..54069	-	221	57866018	-	SERP0065	-	hypothetical protein
64	 33.33	0	54197..54604	-	135	57866019	-	SERP0066	-	hypothetical protein
65	 34.72	0	55201..55779	+	192	57866020	xpt	SERP0067	-	xanthine phosphoribosyltransferase
66	 34.52	0	55779..57047	+	422	57866021	pbuX	SERP0068	-	xanthine permease
67	 38.10	+1	57085..58551	+	488	57866022	guaB	SERP0069	-	inosine-5'-monophosphate dehydrogenase
68	 38.13	+1	58718..60259	+	513	57866023	guaA	SERP0070	-	bifunctional GMP synthase/glutamine amidotransferase protein
69	 25.28	-1	60500..61405	-	301	57866032	-	SERP0071	-	hypothetical protein
70	 30.63	0	62664..63218	-	184	57866033	-	SERP0073	-	hypothetical protein
71	 29.29	0	63328..63945	-	205	57866034	-	SERP0074	-	hypothetical protein
72	 20.51	-2	64144..64260	-	38	57866035	-	SERP0075	-	hypothetical protein
73	 27.27	-1	64836..64967	+	43	57866036	-	SERP0076	-	hypothetical protein
74	 28.21	-1	64980..65096	-	38	57866037	-	SERP0077	-	transposase, putative, truncation
75	 39.26	+1	65272..66300	+	342	57866038	pfoR	SERP0078	-	perfringolysin O regulator protein
76	 31.51	0	66815..67198	+	127	57866047	-	SERP0079	-	hypothetical protein
77	 36.49	+1	67369..68571	+	400	57866048	-	SERP0080	-	cobalamin synthesis protein, putative
78	 27.27	-1	68810..69073	-	87	57866049	-	SERP0081	-	hypothetical protein
79	 34.21	0	69325..69438	+	37	57866050	-	SERP0082	-	hypothetical protein
80	 26.09	-1	69480..69548	-	22	57867841	-	SERP0083	-	phenol soluble modulin alpha
81	 34.27	0	70144..71640	+	498	57866051	nuoF	SERP0084	-	NADH dehydrogenase subunit 5
82	 35.63	0	71658..74225	+	855	57866052	-	SERP0085	-	hypothetical protein
83	 19.23	-2	74236..74313	+	25	57866053	-	SERP0086	-	hypothetical protein
84	 33.06	0	74338..74706	+	122	57866054	-	SERP0087	-	hypothetical protein
85	 25.70	-1	74748..74996	-	82	57866055	-	SERP0088	-	hypothetical protein
86	 32.89	0	75248..75919	+	223	57866064	-	SERP0089	-	PAP2 family protein
87	 35.39	0	76026..76754	+	242	57866065	-	SERP0090	-	carboxylesterase, putative
88	 27.98	-1	76769..77011	+	80	57866066	-	SERP0091	-	hypothetical protein
89	 31.38	0	77156..78484	+	442	57866067	-	SERP0092	-	sodium-dependent transporter, putative
90	 24.81	-1	78663..79202	-	179	57866068	-	SERP0093	-	hypothetical protein
91	 37.40	+1	79505..80413	+	302	57866069	-	SERP0094	-	cysteine synthase/cystathionine beta-synthase family protein
92	 35.43	0	80406..81551	+	381	57866070	-	SERP0095	-	trans-sulfuration enzyme family protein
93	 30.48	0	81701..81805	+	34	57866071	-	SERP0096	-	hypothetical protein
94	 32.16	0	81798..82823	+	341	57866079	-	SERP0097	-	ABC transporter, ATP-binding protein
95	 35.45	0	82826..83485	+	219	57866080	-	SERP0098	-	ABC transporter, permease protein
96	 31.32	0	83529..84374	+	281	57866081	-	SERP0099	-	ABC transporter, substrate-binding protein
97	 36.31	+1	84899..85873	+	324	57866082	-	SERP0100	-	LysM domain-containing protein
98	 29.55	0	86000..87505	-	501	57866083	-	SERP0101	-	glycosyl transferase, group 1 family protein
99	 32.26	0	87880..88158	-	92	57866084	-	SERP0102	-	hypothetical protein
100	 34.63	0	88346..88732	+	128	57866085	-	SERP0103	-	MutT/nudix family protein
32.10	MEAN

3.66	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.