IslandPath Analysis: Mycoplasma pulmonis UAB CTIP



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 27.05   STD DEV: 4.11
Mycoplasma pulmonis UAB CTIP, complete genome - 1..963879
782 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 27.06	0	222..1607	+	461	15828472	dnaA	MYPU_0010	-	chromosomal replication initiation protein
2	 22.64	-1	1741..2862	+	373	15828473	-	MYPU_0020	-	DNA polymerase III, beta chain
3	 26.13	0	2864..3085	+	73	15828474	-	MYPU_0030	-	hypothetical protein
4	 20.32	-1	3088..3771	+	227	15828475	-	MYPU_0040	-	hypothetical protein
5	 20.31	-1	3778..4422	-	214	15828476	-	MYPU_0050	-	hypothetical protein
6	 27.63	0	4603..6759	+	718	15828477	-	MYPU_0060	-	hypothetical protein
7	 24.32	0	6759..8189	+	476	15828478	-	MYPU_0070	-	lipoprotein
8	 25.64	0	8190..8540	+	116	15828479	-	MYPU_0080	-	HIT-like protein (cell cycle regulation)
9	 32.15	+1	8703..9296	+	197	161723295	rplK	MYPU_0090	-	50S ribosomal protein L11
10	 30.29	0	9296..9985	+	229	15828481	rplA	MYPU_0100	-	50S ribosomal protein L1
11	 26.51	0	10940..12316	-	458	15828482	-	MYPU_0110	-	hypothetical protein
12	 24.16	0	12519..13205	-	228	15828483	-	MYPU_0120	-	hypothetical protein
13	 28.14	0	13293..14621	+	442	15828484	trmE	MYPU_0130	-	tRNA modification GTPase TrmE
14	 30.04	0	14667..15425	+	252	15828485	-	MYPU_0140	-	hypothetical protein
15	 24.77	0	15426..16184	+	252	15828486	-	MYPU_0150	-	dimethyladenosine transferase (S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase)(16S rRNA dimethylase)(high level kasugamycin resistance protein KSGA) (kasugamycin dimethyltransferase)
16	 23.33	0	16188..16547	+	119	15828487	-	MYPU_0160	-	hypothetical protein
17	 32.32	+1	16711..19086	+	791	15828488	-	MYPU_0170	-	PTS system, glucose-specific IIABC component (EIIABC-glc) (glucose-permease IIABC component) (phosphotransferase enzyme II, ABC component)(EII-glc/EIII-glc)
18	 22.99	0	19400..20608	+	402	15828489	-	MYPU_0180	-	IS1138 transposase
19	 26.64	0	21109..23409	+	766	15828490	-	MYPU_0190	-	lipoprotein
20	 24.17	0	24591..24950	+	119	15828491	-	MYPU_0200	-	hypothetical protein
21	 29.02	0	25127..26494	+	455	15828492	-	MYPU_0210	-	dihydrolipoamide dehydrogenase
22	 30.67	0	26515..27489	+	324	15828493	-	MYPU_0220	-	hypothetical protein
23	 31.66	+1	27742..29178	+	478	15828494	-	MYPU_0230	-	NADH oxidase (NOXASE)
24	 30.21	0	29335..31866	+	843	15828495	-	MYPU_0240	-	lipoprotein
25	 29.83	0	31869..32639	+	256	15828496	-	MYPU_0250	-	lipoprotein
26	 28.23	0	32643..34445	+	600	15828497	-	MYPU_0260	-	ABC transporter ATP-binding protein
27	 30.23	0	34385..35449	+	354	15828498	-	MYPU_0270	-	ABC transporter permease
28	 29.75	0	35388..36392	+	334	15828499	-	MYPU_0280	-	ABC transporter permease
29	 26.88	0	36397..36582	+	61	15828500	-	MYPU_0290	-	hypothetical protein
30	 23.31	0	36626..37114	+	162	15828501	-	MYPU_0300	-	hypothetical protein
31	 24.07	0	37419..37742	+	107	15828502	-	MYPU_0310	-	hypothetical protein
32	 26.69	0	37708..38745	+	345	15828503	-	MYPU_0320	-	lipoate-protein ligase A
33	 28.75	0	38663..39535	+	290	15828504	-	MYPU_0330	-	esterase/lipase 2
34	 29.15	0	39561..40826	+	421	15828505	-	MYPU_0340	-	seryl-tRNA synthetase
35	 30.98	0	40826..41632	+	268	15828506	-	MYPU_0350	-	esterase/lipase 1
36	 28.22	0	41636..42457	+	273	15828507	-	MYPU_0360	-	esterase/lipase 1
37	 27.01	0	42461..43282	+	273	15828508	-	MYPU_0370	-	esterase/lipase 1
38	 29.60	0	43306..44109	+	267	15828509	-	MYPU_0380	-	esterase/lipase 1
39	 21.59	-1	44365..45990	+	541	15828510	-	MYPU_0390	-	ABC transporter ATP-binding protein
40	 22.92	-1	45965..46684	+	239	15828511	-	MYPU_0400	-	ABC transporter permease
41	 21.67	-1	46741..47580	+	279	15828512	-	MYPU_0410	-	ABC transporter ATP-binding protein
42	 20.62	-1	47605..48831	-	408	15828513	-	MYPU_0420	-	hypothetical protein
43	 26.60	0	48813..49703	-	296	15828514	-	MYPU_0430	-	CpG DNA methylase (cytosine-specific methyltransferase)
44	 26.51	0	49651..50031	-	126	15828515	-	MYPU_0440	-	CpG DNA methylase (cytosine-specific methyltransferase)
45	 26.55	0	50136..51005	+	289	15828516	-	MYPU_0450	-	methionyl-tRNA formyltransferase
46	 33.24	+1	51034..52083	+	349	15828517	-	MYPU_0460	-	glyceraldehyde 3-phosphate dehydrogenase
47	 25.47	0	52127..52393	-	88	15828518	-	MYPU_0470	-	hypothetical protein
48	 25.24	0	52206..53144	+	312	15828519	-	MYPU_0480	-	hypothetical protein
49	 25.97	0	53235..55745	+	836	15828520	-	MYPU_0490	-	DNA polymerase III subunits gamma and tau
50	 27.72	0	55738..56040	+	100	15828521	-	MYPU_0500	-	hypothetical protein
51	 25.00	0	56053..56628	+	191	15828522	recR	MYPU_0510	-	recombination protein RecR
52	 29.08	0	56612..57316	+	234	15828523	-	MYPU_0520	-	thymidylate kinase (dTMP kinase)
53	 23.60	0	57333..58226	+	297	15828524	-	MYPU_0530	-	DNA polymerase III subunit delta'
54	 28.70	0	58219..58887	+	222	15828525	-	MYPU_0540	-	hypothetical protein
55	 28.33	0	59090..60787	-	565	15828526	-	MYPU_0550	-	5'-nucleotidase precursor
56	 25.06	0	60793..61215	-	140	15828527	-	MYPU_0560	-	lipoprotein
57	 26.16	0	61414..62598	+	394	15828528	-	MYPU_0570	-	lipoprotein
58	 18.69	-2	63374..64582	+	402	15828529	-	MYPU_0580	-	hypothetical protein
59	 23.56	0	64840..65739	+	299	15828530	-	MYPU_0590	-	hypothetical protein
60	 17.48	-2	65724..66644	+	306	15828531	-	MYPU_0600	-	hypothetical protein
61	 25.35	0	67316..67741	+	141	15828532	-	MYPU_0610	-	hypothetical protein
62	 19.50	-1	67762..68730	+	322	15828533	-	MYPU_0620	-	hypothetical protein
63	 20.29	-1	68967..69518	+	183	15828534	-	MYPU_0630	-	hypothetical protein
64	 24.30	0	69521..70018	+	165	15828535	-	MYPU_0640	-	ABC transporter ATP-binding protein
65	 19.79	-1	70034..71458	+	474	15828536	-	MYPU_0650	-	ABC transporter permease
66	 22.68	-1	71473..73752	+	759	15828537	-	MYPU_0660	-	ABC transporter ATP-binding protein
67	 26.34	0	74114..74914	+	266	15828538	-	MYPU_0670	-	lipoprotein
68	 31.94	+1	75081..76010	-	309	15828539	-	MYPU_0680	-	hypothetical protein
69	 30.15	0	76135..77577	+	480	15828540	-	MYPU_0690	-	ATP-dependent RNA helicase
70	 20.29	-1	78401..78607	-	68	15828541	-	MYPU_0700	-	hypothetical protein
71	 23.12	0	79639..79824	+	61	15828542	-	MYPU_0710	-	hypothetical protein
72	 17.86	-2	79960..80127	+	55	15828543	-	MYPU_0720	-	hypothetical protein
73	 24.28	0	80311..81006	-	231	15828544	-	MYPU_0730	-	hypothetical protein
74	 17.70	-2	81360..81602	-	80	15828545	-	MYPU_0740	-	hypothetical protein
75	 18.30	-2	81640..81792	+	50	15828546	-	MYPU_0750	-	hypothetical protein
76	 19.58	-1	82641..82829	+	62	15828547	-	MYPU_0760	-	hypothetical protein
77	 23.93	0	82741..83655	+	304	15828548	-	MYPU_0770	-	restriction-modification enzyme subunit R3 (fragment)
78	 25.88	0	83710..84849	+	379	15828549	-	MYPU_0780	-	restriction-modification enzyme subunit R3 (fragment)
79	 23.85	0	85156..85482	-	108	15828550	-	MYPU_0790	-	hypothetical protein
80	 27.17	0	85553..85828	+	91	15828551	-	MYPU_0800	-	hypothetical protein
81	 25.00	0	85856..86239	+	127	15828552	-	MYPU_0810	-	restriction-modification enzyme subunit M3 (fragment)
82	 28.03	0	86433..87431	+	332	15828553	-	MYPU_0820	-	restriction-modification enzyme subunit M3 (fragment)
83	 20.74	-1	87468..88547	+	359	15828554	-	MYPU_0830	-	restriction-modification enzyme subunit S3A
84	 23.11	0	88549..89595	-	348	15828555	-	MYPU_0840	-	restriction-modification enzyme subunit S3B
85	 28.25	0	89890..90381	-	163	15828556	-	MYPU_0850	-	hypothetical protein
86	 25.53	0	90469..90942	+	157	15828557	recU	MYPU_0860	-	Holliday junction-specific endonuclease
87	 24.67	0	90932..91312	-	126	15828558	-	MYPU_0870	-	DNA-binding protein HU
88	 28.90	0	91276..92583	-	435	15828559	engA	MYPU_0880	-	GTP-binding protein EngA
89	 28.57	0	92561..93232	-	223	15828560	-	MYPU_0890	-	cytidylate kinase (CK) (cytidine monophosphate kinase) (CMP kinase)
90	 20.37	-1	93239..93670	-	143	15828561	-	MYPU_0900	-	hypothetical protein
91	 27.50	0	93745..93864	-	39	15828562	-	MYPU_0910	-	hypothetical protein
92	 29.26	0	93935..95749	+	604	15828563	-	MYPU_0920	-	lipoprotein
93	 29.46	0	95918..98341	-	807	15828564	leuS	MYPU_0930	-	leucyl-tRNA synthetase
94	 26.81	0	98487..99620	+	377	15828565	-	MYPU_0940	-	hypothetical protein
95	 26.30	0	99647..100783	+	378	15828566	-	MYPU_0950	-	methylated-DNA--protein-cysteine methyltransferase (6-O-methylguanine-DNA methyltransferase) (O-6-methylguanine-DNA-alkyltransferase)
96	 29.79	0	100778..102751	-	657	15828567	-	MYPU_0960	-	excinuclease ABC subunit B
97	 26.89	0	102808..103257	+	149	15828568	-	MYPU_0970	-	lipopolysaccharide core biosynthesis protein KDTB-like protein
98	 31.68	+1	103276..104730	-	484	15828569	-	MYPU_0980	-	sugar ABC transporter
99	 24.93	0	104711..106471	-	586	15828570	-	MYPU_0990	-	sugar ABC transporter ATP-binding protein
100	 26.07	0	106472..107338	-	288	15828571	-	MYPU_1000	-	sugar ABC transporter permease
27.05	MEAN

4.11	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.