IslandPath Analysis: Thermosipho melanesiensis BI429



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 31.05   STD DEV: 3.59
Thermosipho melanesiensis BI429, complete genome - 1..1915238
1879 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 29.76	0	162..1475	+	437	150019914	-	Tmel_0001	-	chromosomal replication initiator protein DnaA
2	 37.70	+1	1517..1699	+	60	150019915	-	Tmel_0002	-	4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
3	 23.73	-2	5349..5702	-	117	150019916	-	Tmel_0005	-	hypothetical protein
4	 27.33	-1	6140..6805	-	221	150019917	-	Tmel_0006	-	hypothetical protein
5	 25.46	-1	6807..8114	-	435	150019918	-	Tmel_0007	-	ABC transporter related
6	 32.91	0	8798..10666	-	622	150019919	-	Tmel_0008	-	NADH:flavin oxidoreductase/NADH oxidase
7	 35.71	+1	10663..10956	-	97	150019920	-	Tmel_0009	-	4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
8	 32.72	0	10975..11298	-	107	150019921	-	Tmel_0010	-	dinitrogenase iron-molybdenum cofactor biosynthesis protein
9	 32.46	0	11311..11655	-	114	150019922	-	Tmel_0011	-	dinitrogenase iron-molybdenum cofactor biosynthesis protein
10	 33.22	0	11672..12544	-	290	150019923	-	Tmel_0012	-	cobyrinic acid a,c-diamide synthase
11	 32.51	0	12541..13389	-	282	150019924	-	Tmel_0013	-	cobyrinic acid a,c-diamide synthase
12	 34.67	+1	13589..15157	-	522	150019925	-	Tmel_0014	-	putative delta-1-pyrroline-5-carboxylate dehydrogenase
13	 24.85	-1	15352..17166	+	604	150019926	-	Tmel_0015	-	hypothetical protein
14	 36.16	+1	17183..18280	+	365	150019927	-	Tmel_0016	-	basic membrane lipoprotein
15	 32.68	0	18377..19900	+	507	150019928	-	Tmel_0017	-	ABC transporter related
16	 37.68	+1	19902..20936	+	344	150019929	-	Tmel_0018	-	inner-membrane translocator
17	 37.71	+1	20933..21892	+	319	150019930	-	Tmel_0019	-	inner-membrane translocator
18	 27.54	0	21970..22107	+	45	150019931	-	Tmel_0020	-	hypothetical protein
19	 30.65	0	22599..23306	-	235	150019932	-	Tmel_0021	-	hypothetical protein
20	 30.33	0	23321..24187	-	288	150019933	-	Tmel_0022	-	degV family protein
21	 32.66	0	24177..25511	-	444	150019934	-	Tmel_0023	-	DNA repair protein RadA
22	 35.00	+1	25504..27960	-	818	150019935	-	Tmel_0024	-	ATPase
23	 30.37	0	28033..30261	-	742	150019936	-	Tmel_0025	-	phosphotransferase domain-containing protein
24	 30.40	0	30360..30836	+	158	150019937	-	Tmel_0026	-	phosphodiesterase
25	 30.20	0	30930..31856	+	308	150019938	-	Tmel_0027	-	Mg2+ transporter protein, CorA family protein
26	 37.54	+1	32947..33636	-	229	150019939	-	Tmel_0029	-	hypothetical protein
27	 30.88	0	33675..34613	-	312	150019940	-	Tmel_0030	-	radical SAM domain-containing protein
28	 32.96	0	34601..35395	-	264	150019941	-	Tmel_0031	-	FAD-dependent pyridine nucleotide-disulphide oxidoreductase
29	 31.17	0	35380..35934	-	184	150019942	-	Tmel_0032	-	isochorismatase hydrolase
30	 31.76	0	35931..36821	-	296	150019943	-	Tmel_0033	-	radical SAM domain-containing protein
31	 30.75	0	36832..39153	-	773	150019944	-	Tmel_0034	-	ATP-dependent DNA helicase RecG
32	 32.74	0	39157..39834	-	225	150019945	-	Tmel_0035	-	ABC transporter related
33	 28.76	0	39891..40502	+	203	150019946	-	Tmel_0036	-	thiamine pyrophosphokinase
34	 30.59	0	40481..41539	+	352	150019947	-	Tmel_0037	-	1-deoxy-D-xylulose 5-phosphate reductoisomerase
35	 30.73	0	41784..42665	+	293	150019948	-	Tmel_0038	-	periplasmic binding protein
36	 30.56	0	42662..43633	+	323	150019949	-	Tmel_0039	-	transport system permease protein
37	 30.72	0	43659..44462	+	267	150019950	-	Tmel_0040	-	HAD family hydrolase
38	 28.82	0	44469..45089	+	206	150019951	-	Tmel_0041	-	RNA polymerase factor sigma-70
39	 30.91	0	45676..46128	-	150	150019952	-	Tmel_0042	-	riboflavin synthase
40	 30.39	0	46125..47246	-	373	150019953	-	Tmel_0043	-	bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein
41	 28.57	0	47224..47790	-	188	150019954	-	Tmel_0044	-	riboflavin synthase subunit alpha
42	 30.97	0	47783..48796	-	337	150019955	-	Tmel_0045	-	riboflavin biosynthesis protein RibD
43	 30.73	0	48975..50666	-	563	150019956	-	Tmel_0046	-	methyl-accepting chemotaxis sensory transducer
44	 26.96	-1	50684..51091	-	135	150019957	-	Tmel_0047	-	NifU family SUF system FeS assembly protein
45	 31.64	0	51081..52322	-	413	150019958	-	Tmel_0048	-	SufS subfamily cysteine desulfurase
46	 30.03	0	52297..53415	-	372	150019959	-	Tmel_0049	-	SufBD protein
47	 34.12	0	53426..54817	-	463	150019960	-	Tmel_0050	-	FeS assembly protein SufB
48	 29.97	0	54822..55565	-	247	150019961	-	Tmel_0051	-	FeS assembly ATPase SufC
49	 36.11	+1	55681..57300	-	539	150019962	-	Tmel_0052	-	chaperonin GroEL
50	 33.33	0	57317..57589	-	90	150019963	-	Tmel_0053	-	chaperonin Cpn10
51	 31.76	0	57948..58328	+	126	150019964	-	Tmel_0054	-	ribonuclease III
52	 31.53	0	58325..60043	+	572	150019965	-	Tmel_0055	-	hypothetical protein
53	 36.21	+1	60048..61436	+	462	150019966	-	Tmel_0056	-	peptidase U62, modulator of DNA gyrase
54	 31.27	0	61433..62740	+	435	150019967	-	Tmel_0057	-	peptidase U62, modulator of DNA gyrase
55	 30.60	0	62849..63910	+	353	150019968	-	Tmel_0058	-	alanine racemase domain-containing protein
56	 29.76	0	63937..65028	-	363	150019969	-	Tmel_0059	-	hypothetical protein
57	 33.03	0	65163..66167	-	334	150019970	-	Tmel_0060	-	S-adenosylmethionine--tRNA-ribosyltransferase-isomerase
58	 32.94	0	66217..66471	-	84	150019971	-	Tmel_0061	-	ribosomal protein S15
59	 34.22	0	67257..68951	-	564	150019972	-	Tmel_0063	-	prolyl-tRNA synthetase
60	 33.33	0	68948..70357	-	469	150019973	-	Tmel_0064	-	cysteinyl-tRNA synthetase
61	 33.33	0	70362..71783	-	473	150019974	-	Tmel_0065	-	glutamyl-tRNA synthetase
62	 33.83	0	72024..73235	+	403	150019975	-	Tmel_0066	-	uracil-xanthine permease
63	 30.95	0	73811..73936	-	41	150019976	-	Tmel_0068	-	hypothetical protein
64	 18.64	-2	73936..74214	-	92	150019977	-	Tmel_0069	-	hypothetical protein
65	 26.04	-1	74657..75685	-	342	150019978	-	Tmel_0070	-	hypothetical protein
66	 28.92	0	75769..77061	+	430	150019979	-	Tmel_0071	-	RNA modification protein
67	 31.25	0	77080..77943	+	287	150019980	-	Tmel_0072	-	hypothetical protein
68	 28.25	0	77953..78483	+	176	150019981	-	Tmel_0073	-	isochorismatase hydrolase
69	 29.72	0	78485..79426	+	313	150019982	-	Tmel_0074	-	cation diffusion facilitator family transporter
70	 25.46	-1	79389..80480	+	363	150019983	-	Tmel_0075	-	hypothetical protein
71	 36.14	+1	80501..81499	-	332	150019984	-	Tmel_0076	-	galactose-1-phosphate uridylyltransferase
72	 31.60	0	81513..82958	-	481	150019985	-	Tmel_0077	-	glycogen/starch synthase, ADP-glucose type
73	 31.59	0	82964..83593	-	209	150019986	-	Tmel_0078	-	beta-lactamase domain-containing protein
74	 31.56	0	83583..85277	-	564	150019987	-	Tmel_0079	-	sigma-54 dependent trancsriptional regulator
75	 36.25	+1	85279..85689	-	136	150019988	-	Tmel_0080	-	hypothetical protein
76	 29.90	0	85686..86618	-	310	150019989	-	Tmel_0081	-	D-alanine--D-alanine ligase
77	 36.29	+1	86615..88240	-	541	150019990	-	Tmel_0082	-	cobalamin B12-binding domain-containing protein
78	 34.44	0	88237..89316	-	359	150019991	-	Tmel_0083	-	NAD/NADP octopine/nopaline dehydrogenase
79	 31.97	0	89330..90280	-	316	150019992	-	Tmel_0084	-	D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding
80	 33.09	0	90286..91497	-	403	150019993	-	Tmel_0085	-	hydroxypyruvate reductase
81	 31.43	0	91502..92341	-	279	150019994	-	Tmel_0086	-	NAD+ synthetase
82	 35.20	+1	92325..93446	-	373	150019995	-	Tmel_0087	-	chaperone protein DnaJ
83	 30.98	0	93451..94002	-	183	150019996	-	Tmel_0088	-	GrpE protein
84	 31.56	0	94018..95031	-	337	150019997	-	Tmel_0089	-	heat-inducible transcription repressor HrcA
85	 33.25	0	95135..96403	-	422	150019998	-	Tmel_0090	-	major facilitator transporter
86	 33.73	0	96403..96906	-	167	150019999	-	Tmel_0091	-	3H domain-containing protein
87	 29.68	0	97024..97653	-	209	150020000	-	Tmel_0092	-	hemolysin III family channel protein
88	 34.76	+1	97650..98069	-	139	150020001	-	Tmel_0093	-	peptidylprolyl isomerase, FKBP-type
89	 25.06	-1	98443..99663	-	406	150020002	-	Tmel_0094	-	major facilitator transporter
90	 31.65	0	99647..100597	-	316	150020003	-	Tmel_0095	-	radical SAM domain-containing protein
91	 34.61	0	100684..101703	+	339	150020004	-	Tmel_0096	-	peptidase M42 family protein
92	 32.24	0	101703..102707	+	334	150020005	-	Tmel_0097	-	cellulase
93	 30.26	0	102732..102959	-	75	150020006	-	Tmel_0098	-	DNA-directed RNA polymerase, omega subunit
94	 31.22	0	102961..103575	-	204	150020007	-	Tmel_0099	-	guanylate kinase
95	 31.93	0	103577..103861	-	94	150020008	-	Tmel_0100	-	hypothetical protein
96	 29.78	0	103880..104752	-	290	150020009	-	Tmel_0101	-	hypothetical protein
97	 36.50	+1	104889..105425	-	178	150020010	-	Tmel_0102	-	pyruvate ferredoxin/flavodoxin oxidoreductase
98	 37.32	+1	105422..106174	-	250	150020011	-	Tmel_0103	-	thiamine pyrophosphate binding domain-containing protein
99	 38.43	+2	106180..107238	-	352	150020012	-	Tmel_0104	-	2-ketoisovalerate ferredoxin reductase
100	 33.33	0	107251..107472	-	73	150020013	-	Tmel_0105	-	4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
31.05	MEAN

3.59	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.