IslandPath Analysis: Petrotoga mobilis SJ95



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 33.98   STD DEV: 3.25
Petrotoga mobilis SJ95, complete genome - 1..2169548
1898 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 32.60	0	53..1417	+	454	160901492	-	Pmob_0001	-	chromosomal replication initiator protein DnaA
2	 34.71	0	1526..2323	-	265	160901493	-	Pmob_0002	-	Linocin_M18 bacteriocin protein
3	 36.91	0	2355..2717	-	120	160901494	-	Pmob_0003	-	hypothetical protein
4	 29.56	-1	2768..2926	-	52	160901495	-	Pmob_0004	-	hypothetical protein
5	 38.50	+1	2992..3204	-	70	160901496	-	Pmob_0005	-	hypothetical protein
6	 27.87	-1	3402..4115	+	237	160901497	-	Pmob_0006	-	hypothetical protein
7	 30.41	-1	4112..5650	-	512	160901498	-	Pmob_0007	-	binding-protein-dependent transport systems inner membrane component
8	 36.61	0	5655..6632	-	325	160901499	-	Pmob_0008	-	ABC transporter periplasmic-binding protein
9	 32.80	0	6976..7725	+	249	160901500	-	Pmob_0009	-	deoxyribose-phosphate aldolase
10	 38.89	+1	7792..7989	-	65	160901501	-	Pmob_0010	-	cold-shock DNA-binding domain-containing protein
11	 36.56	0	8317..8874	+	185	160901502	-	Pmob_0011	-	translation elongation factor P
12	 35.36	0	8919..10352	-	477	160901503	-	Pmob_0012	-	MATE efflux family protein
13	 30.32	-1	10353..10817	-	154	160901504	-	Pmob_0013	-	MarR family transcriptional regulator
14	 35.02	0	11017..12378	-	453	160901505	-	Pmob_0014	-	MATE efflux family protein
15	 30.82	0	12618..13055	+	145	160901506	-	Pmob_0015	-	transcriptional regulator, TrmB
16	 30.87	0	13058..14719	+	553	160901507	-	Pmob_0016	-	hypothetical protein
17	 30.23	-1	14722..16782	+	686	160901508	-	Pmob_0017	-	hypothetical protein
18	 34.71	0	16798..17598	+	266	160901509	-	Pmob_0018	-	patatin
19	 30.75	0	17595..18368	+	257	160901510	-	Pmob_0019	-	patatin
20	 33.01	0	18365..18991	+	208	160901511	-	Pmob_0020	-	OstA family protein
21	 33.53	0	18994..19509	+	171	160901512	-	Pmob_0021	-	hypothetical protein
22	 32.23	0	19511..19963	+	150	160901513	-	Pmob_0022	-	hypothetical protein
23	 31.52	0	19998..21266	+	422	160901514	-	Pmob_0023	-	hypothetical protein
24	 31.40	0	21274..21894	+	206	160901515	-	Pmob_0024	-	phosphoribosyltransferase
25	 29.33	-1	21864..22787	-	307	160901516	-	Pmob_0025	-	ribokinase-like domain-containing protein
26	 29.00	-1	22873..23403	-	176	160901517	-	Pmob_0026	-	dihydrofolate reductase region
27	 38.89	+1	23726..24967	+	413	160901518	-	Pmob_0027	-	extracellular solute-binding protein
28	 36.43	0	25072..25974	+	300	160901519	-	Pmob_0028	-	binding-protein-dependent transport systems inner membrane component
29	 36.38	0	25988..26839	+	283	160901520	-	Pmob_0029	-	binding-protein-dependent transport systems inner membrane component
30	 33.86	0	26845..28167	+	440	160901521	-	Pmob_0030	-	phosphoglucosamine mutase
31	 38.40	+1	28229..29590	-	453	160901522	-	Pmob_0031	-	protease Do
32	 34.69	0	29680..30270	-	196	160901523	-	Pmob_0032	-	orotate phosphoribosyltransferase
33	 31.71	0	30374..31111	-	245	160901524	-	Pmob_0033	-	alpha/beta hydrolase fold
34	 36.43	0	31131..32456	-	441	160901525	-	Pmob_0034	-	transcription termination factor Rho
35	 35.72	0	32866..33828	-	320	160901526	-	Pmob_0035	-	hypothetical protein
36	 31.76	0	33812..34066	-	84	160901527	-	Pmob_0036	-	hypothetical protein
37	 41.33	+2	34069..34368	-	99	160901528	-	Pmob_0037	-	stage V sporulation protein S
38	 35.38	0	34762..35640	+	292	160901529	-	Pmob_0038	-	periplasmic binding protein
39	 34.72	0	35637..36647	+	336	160901530	-	Pmob_0039	-	transport system permease protein
40	 33.72	0	36644..37414	+	256	160901531	-	Pmob_0040	-	ABC transporter related
41	 32.80	0	37425..38177	+	250	160901532	-	Pmob_0041	-	ribokinase-like domain-containing protein
42	 32.67	0	38187..38639	-	150	160901533	-	Pmob_0042	-	BadM/Rrf2 family transcriptional regulator
43	 34.98	0	38780..39325	-	181	160901534	-	Pmob_0043	-	signal transduction histidine kinase, LytS
44	 32.91	0	39354..40055	-	233	160901535	-	Pmob_0044	-	2-phosphosulfolactate phosphatase
45	 35.63	0	40087..40740	-	217	160901536	-	Pmob_0045	-	phosphoglycerate mutase
46	 37.01	0	40758..42281	-	507	160901537	-	Pmob_0046	-	bifunctional GMP synthase/glutamine amidotransferase protein
47	 32.56	0	42312..43604	-	430	160901538	-	Pmob_0047	-	hypothetical protein
48	 36.36	0	43994..44752	+	252	160901539	-	Pmob_0048	-	stationary-phase survival protein SurE
49	 36.87	0	44757..45293	+	178	160901540	-	Pmob_0049	-	peptide deformylase
50	 34.27	0	45290..46249	+	319	160901541	-	Pmob_0050	-	methionyl-tRNA formyltransferase
51	 33.46	0	46236..47003	-	255	160901542	-	Pmob_0051	-	TatD family hydrolase
52	 32.39	0	47038..47460	-	140	160901543	-	Pmob_0052	-	hypothetical protein
53	 32.01	0	47667..48500	+	277	160901544	-	Pmob_0053	-	Cof-like hydrolase
54	 29.86	-1	48487..49263	+	258	160901545	-	Pmob_0054	-	hypothetical protein
55	 37.05	0	49297..50589	+	430	160901546	-	Pmob_0055	-	UDP-N-acetylglucosamine 1-carboxyvinyltransferase
56	 39.10	+1	50651..51985	-	444	160901547	-	Pmob_0056	-	hypothetical protein
57	 38.24	+1	52090..53046	-	318	160901548	-	Pmob_0057	-	S-layer domain-containing protein
58	 32.83	0	53146..54339	-	397	160901549	-	Pmob_0058	-	tyrosyl-tRNA synthetase
59	 35.86	0	54355..54591	-	78	160901550	-	Pmob_0059	-	preprotein translocase, SecG subunit
60	 33.52	0	55067..56134	+	355	160901551	-	Pmob_0060	-	LacI family transcription regulator
61	 37.44	+1	56209..58908	+	899	160901552	-	Pmob_0061	-	pullulanase, type I
62	 37.40	+1	59054..59962	+	302	160901553	-	Pmob_0062	-	NQR2 and RnfD family protein
63	 36.76	0	59959..60570	+	203	160901554	-	Pmob_0063	-	FMN-binding domain-containing protein
64	 34.97	0	60570..61181	+	203	160901555	-	Pmob_0064	-	RnfA-Nqr electron transport subunit
65	 35.52	0	61181..61774	+	197	160901556	-	Pmob_0065	-	RnfA-Nqr electron transport subunit
66	 36.28	0	61785..62903	+	372	160901557	-	Pmob_0066	-	oxidoreductase FAD/NAD(P)-binding subunit
67	 32.23	0	62927..63379	+	150	160901558	-	Pmob_0067	-	hypothetical protein
68	 35.25	0	63400..64389	+	329	160901559	-	Pmob_0068	-	ornithine carbamoyltransferase
69	 36.94	0	64395..65336	+	313	160901560	-	Pmob_0069	-	carbamate kinase-like carbamoyl phosphate synthetase
70	 36.67	0	65359..66168	-	269	160901561	-	Pmob_0070	-	RpiR family transcriptional regulator
71	 35.03	0	66188..67369	-	393	160901562	-	Pmob_0071	-	glycosyl transferase family protein
72	 35.90	0	67403..68377	-	324	160901563	-	Pmob_0072	-	binding-protein-dependent transport systems inner membrane component
73	 34.24	0	68371..69255	-	294	160901564	-	Pmob_0073	-	binding-protein-dependent transport systems inner membrane component
74	 38.45	+1	69325..70614	-	429	160901565	-	Pmob_0074	-	extracellular solute-binding protein
75	 33.33	0	71051..71599	+	182	160901566	-	Pmob_0075	-	appr-1-p processing domain-containing protein
76	 29.65	-1	71604..72932	+	442	160901567	-	Pmob_0076	-	coenzyme F390 synthetase
77	 33.00	0	72964..75654	+	896	160901568	-	Pmob_0077	-	DNA polymerase I
78	 31.65	0	75928..77235	+	435	160901569	-	Pmob_0078	-	MiaB-like tRNA modifying enzyme YliG
79	 34.51	0	77232..77741	+	169	160901570	-	Pmob_0079	-	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase
80	 33.66	0	77763..78371	+	202	160901571	-	Pmob_0080	-	2'-5' RNA ligase
81	 35.05	0	78364..79470	+	368	160901572	-	Pmob_0081	-	recombinase A
82	 32.48	0	79448..79918	+	156	160901573	-	Pmob_0082	-	regulatory protein RecX
83	 34.49	0	79921..81474	+	517	160901574	-	Pmob_0083	-	RNA binding metal dependent phosphohydrolase
84	 29.90	-1	81513..84632	-	1039	160901575	-	Pmob_0084	-	exonuclease sbcC
85	 33.24	0	84629..85753	-	374	160901576	-	Pmob_0085	-	nuclease SbcCD, D subunit
86	 31.76	0	85816..86322	-	168	160901577	-	Pmob_0086	-	rubrerythrin
87	 29.25	-1	86412..86999	-	195	160901578	-	Pmob_0087	-	hypothetical protein
88	 29.79	-1	87030..87932	-	300	160901579	-	Pmob_0088	-	cation diffusion facilitator family transporter
89	 31.62	0	87944..88468	-	174	160901580	-	Pmob_0089	-	hypothetical protein
90	 35.76	0	88506..89000	-	164	160901581	-	Pmob_0090	-	hypothetical protein
91	 37.58	+1	89065..89535	-	156	160901582	-	Pmob_0091	-	PEBP family protein
92	 34.52	0	89658..90248	-	196	160901583	-	Pmob_0092	-	hypothetical protein
93	 27.74	-1	90363..91865	+	500	160901584	-	Pmob_0093	-	hypothetical protein
94	 28.58	-1	91886..93232	+	448	160901585	-	Pmob_0094	-	hypothetical protein
95	 30.81	0	93291..93965	+	224	160901586	-	Pmob_0095	-	two component transcriptional regulator
96	 32.16	0	94006..95283	+	425	160901587	-	Pmob_0096	-	integral membrane sensor signal transduction histidine kinase
97	 34.39	0	95297..96430	+	377	160901588	-	Pmob_0097	-	aminotransferase class V
98	 31.19	0	96468..97352	+	294	160901589	-	Pmob_0098	-	hypothetical protein
99	 33.68	0	97467..97754	+	95	160901590	-	Pmob_0099	-	hypothetical protein
100	 32.35	0	97757..98365	+	202	160901591	-	Pmob_0100	-	guanylate kinase
33.98	MEAN

3.25	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.