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IslandPath Analysis: Aeropyrum pernix K1

Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).

A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 56.58 STD DEV: 5.58

Aeropyrum pernix K1, complete genome - 1..1669696
1700 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 37.74	-2	213..938	-	241	14600380	-	APE_0001	-	hypothetical protein
2	 45.13	-2	938..1276	-	112	14600381	-	APE_0002	-	PadR family transcriptional regulator
3	 42.51	-2	1260..2174	-	304	14600382	-	APE_0004	-	hypothetical protein
4	 40.56	-2	2270..2836	+	188	118430836	-	APE_0006.1	-	hypothetical protein
5	 50.91	-1	3905..5440	+	511	118430837	-	APE_0007.1	-	hypothetical protein
6	 39.30	-2	5774..6058	-	94	118430838	-	APE_0009.1	-	putative mercury ion binding protein
7	 47.95	-1	6213..7820	-	535	118430839	-	APE_0010.1	-	putative amino acid transporter
8	 49.94	-1	8071..8889	+	272	118430840	fba	APE_0011.1	-	fructose-bisphosphate aldolase
9	 48.23	-1	8908..9840	+	310	14600388	-	APE_0012	-	ATP-dependent 6-phosphofructokinase
10	 55.78	0	9991..11652	+	553	118430841	ilvD	APE_0013.1	-	dihydroxy-acid dehydratase
11	 56.34	0	12387..13907	-	506	118430842	-	APE_0017.1	-	carbohydrate kinase
12	 56.20	0	13925..15319	-	464	118430843	-	APE_0020.1	-	putative pyridoxal-dependent decarboxylase
13	 50.87	-1	15391..15909	-	172	118430844	-	APE_0023.1	-	hypothetical protein
14	 44.61	-2	16021..16419	-	132	118430845	-	APE_0024.1	-	hypothetical protein
15	 49.51	-1	16416..16823	-	135	118430846	-	APE_0025.1	-	TrmB family transcriptional regulator
16	 48.80	-1	16932..18800	+	622	14600396	-	APE_0026	-	hypothetical protein
17	 50.53	-1	18728..19384	+	218	14600397	-	APE_0028	-	hypothetical protein
18	 47.56	-1	19396..20850	+	484	118430847	-	APE_0031.1	-	putative MFS transporter
19	 51.09	0	20910..22379	+	489	118430848	pckA	APE_0033.1	-	phosphoenolpyruvate carboxykinase
20	 53.45	0	22506..23912	+	468	118430849	-	APE_0035.1	-	ABC transporter, substrate binding protein
21	 49.72	-1	23927..24823	+	298	118430850	-	APE_0038.1	-	ABC transporter, permease protein
22	 51.10	0	24838..25698	+	286	118430851	-	APE_0040.1	-	ABC transporter, permease protein
23	 53.48	0	25706..26812	+	368	118430852	-	APE_0043.1	-	ABC transporter, ATP binding protein
24	 52.23	0	26994..28115	+	373	14600404	pstS	APE_0045	-	phosphate ABC transporter, phosphate binding protein
25	 51.45	0	28128..29060	+	310	118430853	pstC	APE_0047.1	-	phosphate ABC transporter, permease protein
26	 51.35	0	29053..29907	+	284	14600406	pstA	APE_0048	-	phosphate ABC transporter, permease protein
27	 50.66	-1	29907..30668	+	253	14600407	pstB	APE_0050	-	phosphate ABC transporter, ATP binding protein
28	 50.66	-1	30668..31273	+	201	14600408	-	APE_0051	-	phosphate transport system protein PhoU
29	 53.88	0	31407..31922	-	171	118430854	-	APE_0052.1	-	hypothetical protein
30	 51.45	0	32017..32877	-	286	118430855	-	APE_0053.1	-	fumarylacetoacetate hydrolase family protein
31	 46.33	-1	33058..33588	-	176	118430856	-	APE_0054.1	-	hypothetical protein
32	 49.34	-1	33674..34966	-	430	14600412	-	APE_0055	-	hypothetical protein
33	 54.58	0	35035..35787	-	250	118430857	-	APE_0056.1	-	enoyl-CoA hydratase/isomerase family protein
34	 48.76	-1	35926..40392	+	1488	118430858	-	APE_0057.1	-	hypothetical protein
35	 52.99	0	40405..41106	+	233	118430859	-	APE_0060.1	-	hypothetical protein
36	 55.35	0	41221..42510	+	429	118430860	-	APE_0061.1	-	hypothetical protein
37	 56.46	0	42608..44086	+	492	14600419	-	APE_0063	-	ABC transporter, ATP binding protein
38	 53.53	0	44083..45018	+	311	14600420	-	APE_0065	-	ABC transporter, permease protein
39	 56.95	0	45034..45867	+	277	118430861	-	APE_0067.1	-	ABC transporter, permease protein
40	 52.16	0	45961..46422	+	153	118430862	-	APE_0067a	-	hypothetical protein
41	 51.46	0	46629..47108	+	159	118430863	dut	APE_0069.1	-	deoxyuridine 5'-triphosphate nucleotidohydrolase
42	 45.49	-1	47135..47677	-	180	118430864	-	APE_0070.1	-	hypothetical protein
43	 49.24	-1	47940..48599	-	219	118430865	-	APE_0071.1	-	hypothetical protein
44	 52.79	0	49294..50331	+	345	14600426	-	APE_0072	-	heme exporter protein C
45	 54.94	0	50407..52197	+	596	118430866	-	APE_0073.1	-	hypothetical protein
46	 55.16	0	52159..53010	-	283	118430867	-	APE_0076.1	-	hypothetical protein
47	 53.49	0	53276..53791	+	171	14600431	mogA	APE_0077	-	molybdopterin biosynthesis protein MogA
48	 50.90	-1	53788..54009	-	73	118430868	-	APE_0077a	-	hypothetical protein
49	 53.88	0	54129..54527	+	132	14600432	speH	APE_0079	-	S-adenosylmethionine decarboxylase proenzyme
50	 52.23	0	54512..56533	-	673	118430869	-	APE_0080.1	-	hypothetical protein
51	 47.51	-1	56575..57759	-	394	118430870	-	APE_0082.1	-	hypothetical protein
52	 51.82	0	57823..58536	-	237	118430871	-	APE_0084.1	-	NADH dehydrogenase
53	 53.03	0	58607..59266	-	219	118430872	-	APE_0085.1	-	hypothetical protein
54	 46.76	-1	59379..59825	+	148	118430873	-	APE_0085a	-	hypothetical protein
55	 47.97	-1	59910..60401	+	163	14600438	-	APE_0086	-	thiol peroxidase
56	 47.94	-1	60406..60720	-	104	118430874	-	APE_0087.1	-	hypothetical protein
57	 47.02	-1	60867..61838	+	323	118430875	-	APE_0088.1	-	hypothetical protein
58	 49.41	-1	62549..63997	+	482	118430876	-	APE_0089.1	-	peptidase
59	 52.22	0	64012..65361	+	449	14600442	-	APE_0091	-	peptidase
60	 53.04	0	65371..66471	-	366	14602183	-	APE_0092.1	-	hypothetical protein
61	 48.07	-1	66579..67616	-	345	118430877	-	APE_0093.1	-	hypothetical protein
62	 51.61	0	67976..68473	+	165	118430878	-	APE_0096.1	-	hypothetical protein
63	 51.78	0	68480..69124	-	214	118430879	-	APE_0097.1	-	hypothetical protein
64	 50.14	-1	69239..72118	-	959	14600448	-	APE_0099	-	DNA polymerase I
65	 54.78	0	72760..74778	+	672	118430880	-	APE_0101.1	-	putative iron-sulfur protein
66	 50.21	-1	74775..75242	-	155	118430881	-	APE_0103.1	-	small heat shock protein
67	 54.10	0	75287..76066	-	259	118430882	-	APE_0104.1	-	hypothetical protein
68	 56.44	0	76192..76416	+	74	118430883	fdxA	APE_0104a.1	-	ferredoxin
69	 53.79	0	76470..77261	+	263	14600453	-	APE_0105	-	putative GTP-binding protein
70	 60.22	0	77364..77735	-	123	118430884	-	APE_0106.1	-	hypothetical protein
71	 55.21	0	77777..79417	-	546	14600455	herA	APE_0107	-	bipolar DNA helicase
72	 57.30	0	79401..80606	-	401	118430885	-	APE_0109.1	-	5' to 3' nuclease repair protein NurA
73	 55.14	0	80633..83392	-	919	14600457	-	APE_0110	-	DNA double-strand break repair rad50 ATPase
74	 54.39	0	83399..84628	-	409	14600458	-	APE_0113	-	double-strand break repair protein MRE11
75	 48.37	-1	84782..84934	-	50	14600459	rpl40e	APE_0113a	-	50S ribosomal protein L40e
76	 57.64	0	85004..86056	-	350	77640971	fen	APE_0115.1	-	flap endonuclease-1
77	 51.08	0	86208..86765	+	185	118430886	-	APE_0116.1	-	hypothetical protein
78	 47.57	-1	86999..87286	+	95	118430887	-	APE_0116a	-	hypothetical protein
79	 57.66	0	87535..88800	-	421	118430888	-	APE_0117.1	-	misacylated tRNAthr hydrolase
80	 53.23	0	88998..89957	+	319	14600463	radA	APE_0119	-	DNA repair and recombination protein RadA
81	 58.84	0	89933..90673	+	246	14600464	-	APE_0121	-	hypothetical protein
82	 51.87	0	90727..91260	+	177	118430889	-	APE_0122.1	-	hypothetical protein
83	 54.05	0	91264..92262	+	332	14600466	-	APE_0124	-	hypothetical protein
84	 56.06	0	92399..93850	+	483	118430890	-	APE_0125.1	-	hypothetical protein
85	 54.39	0	93855..94856	+	333	118430891	-	APE_0126.1	-	hypothetical protein
86	 54.39	0	94864..95808	+	314	14600469	-	APE_0127	-	hypothetical protein
87	 54.48	0	95774..96889	+	371	118430892	-	APE_0129.1	-	hypothetical protein
88	 54.80	0	96896..97999	+	367	118430893	-	APE_0130.1	-	hypothetical protein
89	 54.03	0	98101..98646	-	181	118430894	-	APE_0131.1	-	hypothetical protein
90	 48.25	-1	98849..99163	+	104	118430895	-	APE_0132.1	-	hypothetical protein
91	 50.81	-1	99284..100084	+	266	118430896	etfB	APE_0134.1	-	electron transfer flavoprotein beta-subunit
92	 50.70	-1	100104..101030	+	308	14600475	etfA	APE_0135	-	electron transfer flavoprotein alpha-subunit
93	 49.69	-1	101126..102256	+	376	118430897	-	APE_0136.1	-	hypothetical protein
94	 59.87	0	102380..103879	+	499	14600477	ggt	APE_0137	-	gamma-glutamyltranspeptidase
95	 49.94	-1	103961..104827	+	288	118430898	-	APE_0140.1	-	ATP-dependent universal stress protein
96	 52.54	0	104888..106090	+	400	118430899	-	APE_0141.1	-	hypothetical protein
97	 48.62	-1	106321..106863	+	180	14600480	-	APE_0142	-	DtxR family transcriptional regulator
98	 53.57	0	107051..107722	-	223	118430900	-	APE_0143.1	-	hypothetical protein
99	 51.42	0	107854..108594	+	246	14600482	-	APE_0145	-	hypothetical protein
100	 53.21	0	108844..109683	-	279	118430901	-	APE_0146.1	-	pyrroline-5-carboxylate reductase
56.58	MEAN

5.58	STD DEV

Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.