IslandPath Analysis: Delftia acidovorans SPH-1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 66.62   STD DEV: 5.21
Delftia acidovorans SPH-1, complete genome - 1..6767514
6040 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 62.97	0	16..1422	+	468	160895451	-	Daci_0001	-	chromosomal replication initiator protein DnaA
2	 63.81	0	1544..2662	+	372	160895452	-	Daci_0002	-	DNA polymerase III, beta subunit
3	 65.27	0	2865..5444	+	859	160895453	-	Daci_0003	-	DNA gyrase, B subunit
4	 60.00	-1	5770..6699	-	309	160895454	-	Daci_0004	-	LysR family transcriptional regulator
5	 66.05	0	6915..7727	+	270	160895455	-	Daci_0005	-	hypothetical protein
6	 67.07	0	7781..8029	+	82	160895456	-	Daci_0006	-	hypothetical protein
7	 69.46	0	8040..9437	+	465	160895457	-	Daci_0007	-	acetyl-CoA carboxylase, biotin carboxylase
8	 66.01	0	9434..10345	+	303	160895458	-	Daci_0008	-	allophanate hydrolase subunit 1
9	 67.08	0	10335..11312	+	325	160895459	-	Daci_0009	-	urea amidolyase related protein
10	 64.69	0	11432..12595	-	387	160895460	-	Daci_0010	-	L-carnitine dehydratase/bile acid-inducible protein F
11	 63.08	0	12690..13610	-	306	160895461	-	Daci_0011	-	LysR family transcriptional regulator
12	 69.34	0	13737..14708	+	323	160895462	-	Daci_0012	-	hypothetical protein
13	 66.67	0	14720..15184	+	154	160895463	-	Daci_0013	-	dehydratase
14	 63.97	0	15195..15713	+	172	160895464	-	Daci_0014	-	hypothetical protein
15	 68.59	0	15884..17290	-	468	160895465	-	Daci_0015	-	histidine kinase
16	 69.07	0	17295..18083	-	262	160895466	-	Daci_0016	-	two component transcriptional regulator
17	 70.04	0	18230..19651	-	473	160895467	-	Daci_0017	-	outer membrane efflux protein
18	 67.05	0	19638..22742	-	1034	160895468	-	Daci_0018	-	CzcA family heavy metal efflux protein
19	 70.50	0	22764..23912	-	382	160895469	-	Daci_0019	-	RND family efflux transporter MFP subunit
20	 53.85	-2	24333..24644	+	103	160895470	-	Daci_0020	-	hypothetical protein
21	 68.06	0	24810..26888	+	692	160895471	-	Daci_0021	-	ATP-dependent DNA helicase DinG
22	 66.37	0	28449..29111	-	220	160895472	-	Daci_0022	-	hypothetical protein
23	 70.81	0	29287..29841	-	184	160895473	-	Daci_0023	-	hypothetical protein
24	 67.52	0	30152..31207	+	351	160895474	-	Daci_0024	-	recombination associated protein
25	 68.94	0	31268..32455	-	395	160895475	-	Daci_0025	-	beta-ketothiolase
26	 73.89	+1	32555..33343	-	262	160895476	-	Daci_0026	-	enoyl-CoA hydratase/isomerase
27	 68.68	0	33353..35188	-	611	160895477	-	Daci_0027	-	AMP-dependent synthetase and ligase
28	 66.67	0	35334..36152	-	272	160895478	-	Daci_0028	-	ABC transporter related
29	 65.06	0	36178..37359	-	393	160895479	-	Daci_0029	-	extracellular ligand-binding receptor
30	 66.67	0	37397..38434	-	345	160895480	-	Daci_0030	-	inner-membrane translocator
31	 69.39	0	38457..39338	-	293	160895481	-	Daci_0031	-	inner-membrane translocator
32	 70.17	0	39335..40219	-	294	160895482	-	Daci_0032	-	ABC transporter related
33	 68.48	0	40350..41120	+	256	160895483	-	Daci_0033	-	TetR family transcriptional regulator
34	 70.80	0	41147..41581	-	144	160895484	-	Daci_0034	-	MerR family transcriptional regulator
35	 65.64	0	41626..41820	-	64	160895485	-	Daci_0035	-	heavy metal transport/detoxification protein
36	 67.90	0	42121..43824	+	567	160895486	-	Daci_0036	-	methyl-accepting chemotaxis sensory transducer
37	 69.62	0	43930..45048	-	372	160895487	-	Daci_0037	-	NADH:flavin oxidoreductase/NADH oxidase
38	 68.56	0	45130..45711	-	193	160895488	-	Daci_0038	-	NADPH-dependent FMN reductase
39	 71.18	0	45716..46690	-	324	160895489	-	Daci_0039	-	hypothetical protein
40	 66.30	0	46791..47342	-	183	160895490	-	Daci_0040	-	glyoxalase/bleomycin resistance protein/dioxygenase
41	 68.48	0	47355..47741	-	128	160895491	-	Daci_0041	-	NIPSNAP family protein
42	 71.96	+1	47755..48510	-	251	160895492	-	Daci_0042	-	short-chain dehydrogenase/reductase SDR
43	 71.45	0	48625..49398	+	257	160895493	-	Daci_0043	-	IclR family transcriptional regulator
44	 65.75	0	49470..50120	-	216	160895494	-	Daci_0044	-	glutathione S-transferase domain-containing protein
45	 71.60	0	50174..50761	-	195	160895495	-	Daci_0045	-	NADPH-dependent FMN reductase
46	 66.87	0	51062..53041	+	659	160895496	-	Daci_0046	-	tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
47	 68.18	0	53038..53697	+	219	160895497	-	Daci_0047	-	methyltransferase GidB
48	 64.07	0	53804..54418	+	204	160895498	-	Daci_0048	-	lysine exporter protein LysE/YggA
49	 65.11	0	54432..55202	+	256	160895499	-	Daci_0049	-	cobyrinic acid ac-diamide synthase
50	 70.05	0	55374..55934	+	186	160895500	-	Daci_0050	-	hypothetical protein
51	 67.63	0	55948..56883	+	311	160895501	-	Daci_0051	-	parB-like partition protein
52	 69.18	0	57079..58113	+	344	160895502	-	Daci_0052	-	peptidoglycan binding domain-containing protein
53	 73.84	+1	58302..59123	+	273	160895503	-	Daci_0053	-	methyltransferase type 12
54	 69.25	0	59137..59484	-	115	160895504	-	Daci_0054	-	cytochrome c, class I
55	 71.13	0	59571..60824	-	417	160895505	-	Daci_0055	-	oxidoreductase molybdopterin binding
56	 72.62	+1	60896..61483	-	195	160895506	-	Daci_0056	-	hypothetical protein
57	 69.88	0	61480..62070	-	196	160895507	-	Daci_0057	-	ECF subfamily RNA polymerase sigma-24 factor
58	 70.54	0	62127..63056	-	309	160895508	-	Daci_0058	-	AraC family transcriptional regulator
59	 69.54	0	63263..64516	+	417	160895509	-	Daci_0059	-	major facilitator transporter
60	 67.52	0	64674..65963	+	429	160895510	-	Daci_0060	-	glutamate carboxypeptidase
61	 68.46	0	66152..67153	-	333	160895511	-	Daci_0061	-	hypothetical protein
62	 70.22	0	67225..68433	-	402	160895512	-	Daci_0062	-	L-carnitine dehydratase/bile acid-inducible protein F
63	 69.54	0	68563..69468	+	301	160895513	-	Daci_0063	-	LysR family transcriptional regulator
64	 67.79	0	69458..70882	-	474	160895514	-	Daci_0064	-	FAD linked oxidase domain-containing protein
65	 63.14	0	70965..71333	-	122	160895515	-	Daci_0065	-	signal transduction protein
66	 68.41	0	71515..72087	+	190	160895516	-	Daci_0066	-	ATP--cobalamin adenosyltransferase
67	 70.20	0	72141..73046	+	301	160895517	-	Daci_0067	-	LysR family transcriptional regulator
68	 63.34	0	73214..74146	+	310	160895518	-	Daci_0068	-	hypothetical protein
69	 73.62	+1	74836..76071	-	411	160895519	-	Daci_0069	-	D-amino-acid dehydrogenase
70	 63.83	0	76294..77175	+	293	160895520	-	Daci_0070	-	extracellular solute-binding protein
71	 73.10	+1	77190..77951	+	253	160895521	-	Daci_0071	-	aspartate racemase
72	 68.71	0	77945..79264	-	439	160895522	-	Daci_0072	-	benzoyl-CoA oxygenase/reductase, BoxA protein
73	 67.51	0	79291..80718	-	475	160895523	-	Daci_0073	-	benzoyl-CoA oxygenase component B
74	 70.26	0	80757..82427	-	556	160895524	-	Daci_0074	-	enoyl-CoA hydratase
75	 69.73	0	82621..83535	-	304	160895525	-	Daci_0075	-	anaerobic benzoate catabolism transcriptional regulator
76	 69.75	0	83710..85266	+	518	160895526	-	Daci_0076	-	benzoate-CoA ligase family
77	 66.15	0	85325..86488	+	387	160895527	-	Daci_0077	-	extracellular ligand-binding receptor
78	 66.32	0	86539..87411	+	290	160895528	-	Daci_0078	-	inner-membrane translocator
79	 69.71	0	87415..88500	+	361	160895529	-	Daci_0079	-	inner-membrane translocator
80	 72.33	+1	88493..89251	+	252	160895530	-	Daci_0080	-	ABC transporter related
81	 70.73	0	89244..89957	+	237	160895531	-	Daci_0081	-	ABC transporter related
82	 64.18	0	89990..90835	-	281	160895532	-	Daci_0082	-	hypothetical protein
83	 67.48	0	90832..91446	-	204	160895533	-	Daci_0083	-	hypothetical protein
84	 70.25	0	91554..92027	-	157	160895534	-	Daci_0084	-	thioesterase superfamily protein
85	 67.59	0	92166..93680	-	504	160895535	-	Daci_0085	-	succinate CoA transferase
86	 66.28	0	93888..95195	-	435	160895536	-	Daci_0086	-	uracil-xanthine permease
87	 70.73	0	95340..97454	+	704	160895537	-	Daci_0087	-	acetoacetyl-CoA synthetase
88	 69.34	0	97543..98700	+	385	160895538	-	Daci_0088	-	acyl-CoA dehydrogenase domain-containing protein
89	 72.59	+1	98869..99897	+	342	160895539	-	Daci_0089	-	acyl-CoA dehydrogenase domain-containing protein
90	 70.09	0	99921..100709	+	262	160895540	-	Daci_0090	-	enoyl-CoA hydratase
91	 68.50	0	100809..101624	+	271	160895541	-	Daci_0091	-	septum site-determining protein MinC
92	 64.21	0	101674..102486	+	270	160895542	-	Daci_0092	-	septum site-determining protein MinD
93	 60.23	-1	102493..102756	+	87	160895543	-	Daci_0093	-	cell division topological specificity factor MinE
94	 68.64	0	102986..104047	-	353	160895544	-	Daci_0094	-	amino acid permease-associated region
95	 69.25	0	104602..105105	-	167	160895545	-	Daci_0096	-	flavin reductase domain-containing protein
96	 72.01	+1	105296..105931	-	211	160895546	-	Daci_0097	-	DNA polymerase III, epsilon subunit
97	 70.26	0	105976..106476	-	166	160895547	-	Daci_0098	-	MarR family transcriptional regulator
98	 70.80	0	106551..107372	-	273	160895548	-	Daci_0099	-	2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase
99	 69.97	0	107391..108845	-	484	160895549	-	Daci_0100	-	succinic semialdehyde dehydrogenase
100	 68.59	0	108891..109724	-	277	160895550	-	Daci_0101	-	2-oxo-hepta-3-ene-1,7-dioic acid hydratase
66.62	MEAN

5.21	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.