IslandPath Analysis: Methanococcus vannielii SB



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 32.06   STD DEV: 3.89
Methanococcus vannielii SB, complete genome - 1..1720048
1678 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 28.88	0	5036..5551	+	171	150398761	-	Mevan_0001	-	flavin reductase domain-containing protein
2	 32.81	0	5608..6180	+	190	150398762	-	Mevan_0002	-	imidazoleglycerol-phosphate dehydratase
3	 30.45	0	6323..7189	+	288	150398763	-	Mevan_0003	-	hypothetical protein
4	 33.79	0	7243..8121	-	292	150398764	-	Mevan_0004	-	diaminopimelate epimerase
5	 35.69	0	8346..8600	-	84	150398765	-	Mevan_0005	-	PRC-barrel domain-containing protein
6	 27.23	-1	8601..9206	-	201	150398766	-	Mevan_0006	-	5'-deoxyadenosylcobinamide phosphate nucleotidyltransferase
7	 34.04	0	9339..10049	+	236	150398767	-	Mevan_0007	-	hypothetical protein
8	 28.57	0	10071..10448	+	125	150398768	-	Mevan_0008	-	hypothetical protein
9	 29.69	0	10569..10760	+	63	150398769	-	Mevan_0009	-	4-oxalocrotonate tautomerase
10	 37.78	+1	10868..11452	+	194	150398770	-	Mevan_0010	-	NADPH-dependent FMN reductase
11	 29.14	0	11535..11963	+	142	150398771	-	Mevan_0011	-	hypothetical protein
12	 35.00	0	11997..12476	-	159	150398772	-	Mevan_0012	-	SNARE associated Golgi protein
13	 35.16	0	12483..12866	-	127	150398773	-	Mevan_0013	-	signal transduction protein
14	 30.28	0	13034..13426	+	130	150398774	-	Mevan_0014	-	transcriptional regulator, TrmB
15	 33.02	0	13459..14406	+	315	150398775	-	Mevan_0015	-	ribonuclease Z
16	 33.86	0	14519..15088	+	189	150398776	-	Mevan_0016	-	hypothetical protein
17	 34.52	0	15172..16179	+	335	150398777	-	Mevan_0017	-	selenophosphate synthetase
18	 30.38	0	16480..16716	+	78	150398778	-	Mevan_0018	-	hypothetical protein
19	 33.33	0	16774..17169	+	131	150398779	-	Mevan_0019	-	hypothetical protein
20	 33.14	0	17233..18276	+	347	150398780	-	Mevan_0020	-	small GTP-binding protein
21	 29.32	0	18341..19012	-	223	150398781	-	Mevan_0021	-	rhodanese domain-containing protein
22	 28.48	0	19028..19687	-	219	150398782	-	Mevan_0022	-	ATP/GTP-binding motif-containing protein
23	 34.39	0	19823..21049	-	408	150398783	argJ	Mevan_0023	-	bifunctional ornithine acetyltransferase/N-acetylglutamate synthase protein
24	 25.89	-1	21153..22442	-	429	150398784	-	Mevan_0024	-	polysaccharide biosynthesis protein
25	 26.94	-1	22511..23104	-	197	150398785	-	Mevan_0025	-	TPR repeat-containing protein
26	 27.64	-1	23135..23485	-	116	150398786	-	Mevan_0026	-	TPR repeat-containing protein
27	 36.66	+1	23701..24633	-	310	150398787	-	Mevan_0027	-	GMP synthase subunit B
28	 33.96	0	24675..26279	-	534	150398788	-	Mevan_0028	-	CTP synthetase
29	 33.33	0	26578..27147	-	189	150398789	-	Mevan_0029	-	exonuclease RNase T and DNA polymerase III
30	 29.39	0	27367..29622	-	751	150398790	-	Mevan_0030	-	DEAD/DEAH box helicase domain-containing protein
31	 36.31	+1	29960..30598	+	212	150398791	-	Mevan_0031	-	cobalt transport protein CbiM
32	 34.25	0	30591..30917	+	108	150398792	-	Mevan_0032	-	cobalt transport protein CbiN
33	 25.74	-1	31061..31363	+	100	150398793	-	Mevan_0033	-	stress responsive alpha-beta barrel domain-containing protein
34	 27.84	-1	31494..32258	+	254	150398794	-	Mevan_0034	-	cobalt ABC transporter, inner membrane subunit CbiQ
35	 27.46	-1	32447..33655	+	402	150398795	-	Mevan_0035	-	TPR repeat-containing protein
36	 31.12	0	33762..34259	+	165	150398796	-	Mevan_0036	-	hypothetical protein
37	 27.64	-1	34295..35260	+	321	150398797	-	Mevan_0037	-	hypothetical protein
38	 33.56	0	35283..36164	-	293	150398798	-	Mevan_0038	-	AIR synthase related protein
39	 25.58	-1	36414..36800	+	128	150398799	-	Mevan_0039	-	hypothetical protein
40	 33.63	0	36893..37906	+	337	150398800	-	Mevan_0040	-	isopropylmalate/isohomocitrate dehydrogenase
41	 34.17	0	38064..39608	+	514	150398801	-	Mevan_0041	-	seryl-tRNA synthetase
42	 31.55	0	39884..40276	-	130	150398802	-	Mevan_0042	-	ribonuclease P-related
43	 28.75	0	40314..41207	+	297	150398803	-	Mevan_0043	-	nicotinate-nucleotide pyrophosphorylase
44	 30.68	0	41250..42305	+	351	150398804	cofG	Mevan_0044	-	FO synthase subunit 1
45	 34.08	0	42322..43920	-	532	150398805	-	Mevan_0045	-	S-layer protein
46	 30.05	0	44104..44955	+	283	150398806	-	Mevan_0046	-	methyltransferase type 12
47	 25.90	-1	44993..46513	-	506	150398807	-	Mevan_0047	-	TPR repeat-containing protein
48	 32.46	0	46591..47505	-	304	150398808	-	Mevan_0048	-	porphobilinogen deaminase
49	 32.16	0	47712..48905	-	397	150398809	-	Mevan_0049	-	hypothetical protein
50	 30.16	0	49601..50041	-	146	150398810	-	Mevan_0051	-	CMP/dCMP deaminase zinc-binding
51	 31.97	0	50483..51652	+	389	150398811	-	Mevan_0052	-	glycine betaine/L-proline ABC transporter, ATPase subunit
52	 34.29	0	51668..52501	+	277	150398812	-	Mevan_0053	-	binding-protein-dependent transport systems inner membrane component
53	 35.71	0	52556..53440	+	294	150398813	-	Mevan_0054	-	substrate-binding region of ABC-type glycine betaine transport system
54	 31.70	0	53555..54958	+	467	150398814	-	Mevan_0055	-	aminotransferase class-III
55	 27.93	-1	55010..56176	-	388	150398815	-	Mevan_0056	-	sodium/hydrogen exchanger
56	 30.19	0	56186..56662	-	158	150398816	-	Mevan_0057	-	signal transduction protein
57	 29.91	0	56858..57178	-	106	150398817	-	Mevan_0058	-	dinitrogenase iron-molybdenum cofactor biosynthesis protein
58	 35.73	0	57144..58520	-	458	150398818	-	Mevan_0059	-	nitrogenase
59	 38.50	+1	58530..59960	-	476	150398819	-	Mevan_0060	-	nitrogenase MoFe cofactor biosynthesis protein NifE
60	 39.74	+1	59986..61374	-	462	150398820	-	Mevan_0061	-	nitrogenase
61	 39.57	+1	61371..62798	-	475	150398821	-	Mevan_0062	-	nitrogenase alpha chain
62	 34.70	0	62898..63263	-	121	150398822	-	Mevan_0063	-	nitrogen regulatory protein P-II
63	 34.91	0	63272..63589	-	105	150398823	-	Mevan_0064	-	nitrogen regulatory protein P-II
64	 41.79	+2	63631..64458	-	275	150398824	nifH	Mevan_0065	-	nitrogenase reductase
65	 25.79	-1	64726..65202	+	158	150398825	-	Mevan_0066	-	hypothetical protein
66	 35.79	0	65270..66574	-	434	150398826	-	Mevan_0067	-	molybdopterin oxidoreductase
67	 38.17	+1	66630..68594	-	654	150398827	-	Mevan_0068	-	4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
68	 34.59	0	68684..69877	-	397	150398828	-	Mevan_0069	-	4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
69	 36.51	+1	69886..71301	-	471	150398829	-	Mevan_0070	-	nickel-dependent hydrogenase large subunit
70	 37.43	+1	71323..72225	-	300	150398830	-	Mevan_0071	-	NADH ubiquinone oxidoreductase 20 kDa subunit
71	 39.48	+1	72243..72665	-	140	150398831	-	Mevan_0072	-	methyl-viologen-reducing hydrogenase delta subunit
72	 35.93	0	73023..74255	+	410	150398832	-	Mevan_0073	-	nickel-dependent hydrogenase large subunit
73	 33.73	0	74266..74766	+	166	150398833	-	Mevan_0074	-	coenzyme F420-reducing hydrogenase delta subunit
74	 37.72	+1	74777..75505	+	242	150398834	-	Mevan_0075	-	coenzyme F420 hydrogenase
75	 36.16	+1	75527..76375	+	282	150398835	-	Mevan_0076	-	coenzyme F420-reducing hydrogenase subunit beta
76	 23.40	-2	76468..76950	-	160	150398836	-	Mevan_0077	-	flavodoxin-like protein
77	 24.31	-1	77008..77439	-	143	150398837	-	Mevan_0078	-	hypothetical protein
78	 28.21	0	77604..79166	+	520	150398838	-	Mevan_0079	-	type I restriction-modification system, M subunit
79	 28.33	0	79169..80347	+	392	150398839	-	Mevan_0080	-	restriction modification system DNA specificity subunit
80	 27.50	-1	80350..81807	+	485	150398840	-	Mevan_0081	-	putative transcriptional regulator
81	 26.27	-1	81811..84855	+	1014	150398841	-	Mevan_0082	-	HsdR family type I site-specific deoxyribonuclease
82	 25.00	-1	85039..85266	+	75	150398842	-	Mevan_0083	-	seryl-tRNA synthetase-like protein
83	 31.39	0	85261..85878	-	205	150398843	-	Mevan_0084	-	CRISPR-associated DNA-binding protein
84	 28.52	0	86006..89056	+	1016	150398844	-	Mevan_0085	-	UvrD/REP helicase
85	 23.87	-2	89088..89309	+	73	150398845	-	Mevan_0086	-	hypothetical protein
86	 30.38	0	89363..94231	+	1622	150398846	-	Mevan_0087	-	superfamily I DNA/RNA helicase
87	 33.00	0	94332..94931	-	199	150398847	-	Mevan_0088	-	resolvase domain-containing protein
88	 33.50	0	95281..96447	-	388	150398848	-	Mevan_0089	-	TPR repeat-containing protein
89	 24.06	-2	97624..98421	-	265	150398849	-	Mevan_0090	-	hypothetical protein
90	 26.99	-1	98439..101624	+	1061	150398850	-	Mevan_0091	-	heat shock protein DnaJ domain-containing protein
91	 25.31	-1	101618..102514	+	298	150398851	-	Mevan_0092	-	hypothetical protein
92	 33.62	0	102534..104255	+	573	150398852	-	Mevan_0093	-	2-alkenal reductase
93	 33.80	0	104352..104780	+	142	150398853	-	Mevan_0094	-	hypothetical protein
94	 30.23	0	105487..106776	-	429	150398854	-	Mevan_0095	-	filamentation induced by cAMP protein Fic
95	 29.25	0	107037..108308	+	423	150398855	-	Mevan_0096	-	hypothetical protein
96	 27.56	-1	108760..108915	+	51	150398856	-	Mevan_0097	-	hypothetical protein
97	 29.60	0	109263..109664	-	133	150398857	-	Mevan_0098	-	hypothetical protein
98	 24.24	-2	109657..109953	-	98	150398858	-	Mevan_0099	-	hypothetical protein
99	 27.12	-1	110228..110533	-	101	150398859	-	Mevan_0100	-	hypothetical protein
100	 30.94	0	112796..113632	-	278	150398860	-	Mevan_0102	-	hypothetical protein
32.06	MEAN

3.89	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.