IslandPath Analysis: Campylobacter curvus 525.92



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 44.26   STD DEV: 5.45
Campylobacter curvus 525.92, complete genome - 1..1971264
1931 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 39.36	0	1..1311	+	436	154174998	dnaA	CCV52592_2056	-	chromosomal replication initiation protein
2	 34.93	-1	1465..2532	+	355	154174460	dnaN	CCV52592_2055	-	DNA polymerase III subunit beta
3	 42.37	0	2542..4854	+	770	154173892	gyrB	CCV52592_2054	-	DNA gyrase subunit B
4	 41.97	0	5515..6753	+	412	154174828	-	CCV52592_2052	-	hydrolase
5	 39.31	0	6952..7386	+	144	154174040	-	CCV52592_2051	-	hypothetical protein
6	 43.02	0	7494..7937	+	147	154173731	-	CCV52592_2050	-	hypothetical protein
7	 46.32	0	7983..9584	-	533	154174960	-	CCV52592_2049	-	hypothetical protein
8	 46.61	0	9593..10300	-	235	154174409	-	CCV52592_2048	-	flagellar basal body rod modification protein
9	 42.53	0	10310..11734	-	474	154173938	-	CCV52592_2047	-	hypothetical protein
10	 49.75	+1	11866..13668	+	600	154175347	typA	CCV52592_2046	-	GTP-binding protein TypA/BipA
11	 43.06	0	13821..14396	+	191	154174326	-	CCV52592_2045	-	putative membrane-bound tetrahaem cytochrome TorC/YecK
12	 52.18	+1	14513..16963	+	816	154173751	-	CCV52592_2044	-	trimethylamine-n-oxide reductase 1 (tmaoreductase 1) (trimethylamine oxidase 1)
13	 43.86	0	17171..17683	+	170	154173629	-	CCV52592_2043	-	HuvX protein
14	 32.97	-2	17720..17992	-	90	154175273	-	CCV52592_2042	-	putative cytochrome c
15	 33.33	-2	17979..18308	-	109	154175033	-	CCV52592_2041	-	hypothetical protein
16	 45.65	0	18398..20857	-	819	154174192	flgE	CCV52592_2040	-	flagellar hook protein FlgE
17	 49.42	0	21317..22684	-	455	154174388	-	CCV52592_2039	-	transport protein
18	 41.22	0	22776..23168	-	130	154173940	-	CCV52592_2038	-	hypothetical protein
19	 50.73	+1	23282..24103	+	273	154174851	-	CCV52592_2037	-	peptidoglycan binding domain-containing protein
20	 55.56	+2	24339..26012	+	557	154175263	ilvD	CCV52592_2036	-	dihydroxy-acid dehydratase
21	 46.36	0	26043..27923	+	626	154173929	-	CCV52592_2035	-	putative transducer
22	 44.44	0	27937..28386	+	149	154174418	-	CCV52592_2034	-	hypothetical protein
23	 50.22	+1	28409..30001	+	530	154175087	-	CCV52592_2033	-	RmuC domain-containing protein
24	 50.93	+1	30008..30757	-	249	154174692	-	CCV52592_2032	-	4-carboxymuconolactone decarboxylase
25	 47.37	0	30757..30870	-	37	154175110	-	CCV52592_2031	-	hypothetical protein
26	 44.44	0	30851..31075	-	74	154173861	-	CCV52592_2030	-	hypothetical protein
27	 53.76	+1	31423..31941	-	172	154174964	-	CCV52592_2028	-	aldo/keto reductase family oxidoreductase
28	 50.68	+1	32530..32823	-	97	154175063	-	CCV52592_2026	-	antibiotic biosynthesis monooxygenase domain-containing protein
29	 41.67	0	32774..32905	-	43	154175452	-	CCV52592_2025	-	hypothetical protein
30	 52.49	+1	34019..34780	-	253	154174618	-	CCV52592_2023	-	oxidoreductase
31	 48.01	0	34864..35817	-	317	154175203	-	CCV52592_2022	-	aldo/keto reductase family oxidoreductase
32	 35.09	-1	35846..35959	+	37	154174595	-	CCV52592_2127	-	hypothetical protein
33	 42.86	0	35937..36062	-	41	154174033	-	CCV52592_2021	-	hypothetical protein
34	 52.14	+1	36040..36576	-	178	154174930	-	CCV52592_2020	-	cupin 2, barrel
35	 54.37	+1	37791..38270	-	159	154173989	-	CCV52592_2018	-	flavodoxin
36	 53.64	+1	38311..38901	-	196	154175404	-	CCV52592_2017	-	NAD-dependent epimerase/dehydratase family protein
37	 52.79	+1	38925..40070	-	381	154174869	-	CCV52592_2016	-	NADH-dependent butanol dehydrogenase a (bdh i)
38	 37.68	-1	40089..40226	-	45	154174232	-	CCV52592_2015	-	hypothetical protein
39	 52.93	+1	40589..42619	-	676	154175407	cooS	CCV52592_1131	-	carbon-monoxide dehydrogenase, catalytic subunit
40	 21.97	-2	42635..42766	+	43	154175214	-	CCV52592_2128	-	hypothetical protein
41	 47.71	0	42811..43728	+	305	154174813	-	CCV52592_1130	-	twin-arginine translocation pathway signal
42	 52.20	+1	43725..44450	+	241	154174059	-	CCV52592_1129	-	taurine transport system permease protein TauC
43	 46.24	0	44447..45190	+	247	154175209	-	CCV52592_1128	-	putative ABC transporter, ATP-binding protein
44	 52.04	+1	45195..46103	-	302	154174943	-	CCV52592_1127	-	oxidoreductase W
45	 44.69	0	46163..46840	-	225	154173832	-	CCV52592_1126	-	anaerobic ribonucleoside-triphosphate reductase activating protein
46	 47.96	0	47086..49191	-	701	154175399	nrdD	CCV52592_1124	-	anaerobic ribonucleoside triphosphate reductase
47	 22.22	-2	49294..49419	-	41	154175005	-	CCV52592_1123	-	hypothetical protein
48	 52.93	+1	49451..51823	-	790	154174561	-	CCV52592_1122	-	ribonucleotide-diphosphate reductase subunit alpha
49	 54.91	+1	51946..53289	-	447	154173857	purB	CCV52592_1121	-	adenylosuccinate lyase
50	 48.47	0	53426..54343	+	305	154175159	-	CCV52592_1120	-	putative prophage LambdaCh01, recombination protein Bet
51	 48.39	0	55175..56290	-	371	154175427	-	CCV52592_1119	-	radical SAM protein
52	 39.54	0	56287..57027	-	246	154174295	-	CCV52592_1118	-	purine nucleoside phosphorylase
53	 52.83	+1	57065..57823	-	252	154174514	hisF	CCV52592_1117	-	imidazoleglycerol phosphate synthase, cyclase subunit
54	 41.14	0	57979..58836	+	285	154174948	ksgA	CCV52592_1116	-	dimethyladenosine transferase
55	 50.12	+1	59195..60916	+	573	154175541	-	CCV52592_1115	-	hypothetical protein
56	 48.08	0	60928..61890	+	320	154174038	-	CCV52592_1114	-	arabinose 5-phosphate isomerase
57	 47.03	0	61892..62665	+	257	154174771	-	CCV52592_1113	-	RNA-uridine isomerase
58	 43.06	0	62707..63282	-	191	154173624	-	CCV52592_1112	-	YbaK/prolyl-tRNA synthetase associated region
59	 42.24	0	63347..64042	+	231	154174163	ung	CCV52592_1111	-	uracil-DNA glycosylase
60	 44.44	0	64973..67123	+	716	154174721	-	CCV52592_1110	-	TonB-dependent receptor domain-containing protein
61	 48.24	0	69948..70430	-	160	154173883	-	CCV52592_0353	-	putative pyruvate kinase
62	 54.13	+1	71098..71775	-	225	154173925	-	CCV52592_0352	-	hypothetical protein
63	 54.88	+1	71813..72796	-	327	154175233	purM	CCV52592_0351	-	phosphoribosylaminoimidazole synthetase
64	 42.16	0	72866..73477	+	203	154175090	coaE	CCV52592_0349	-	dephospho-CoA kinase
65	 41.33	0	73458..74207	+	249	154174386	dapF	CCV52592_0348	-	diaminopimelate epimerase
66	 40.90	0	74249..74605	-	118	154174891	rplT	CCV52592_0347	-	50S ribosomal protein L20
67	 41.15	0	74696..74887	-	63	154174571	rpmI	CCV52592_0346	-	50S ribosomal protein L35
68	 47.26	0	75094..76587	+	497	154173679	-	CCV52592_0344	-	C69 family peptidase
69	 33.33	-2	76564..76704	-	46	154174005	-	CCV52592_0345	-	hypothetical protein
70	 34.19	-1	76670..76786	-	38	154175308	-	CCV52592_2129	-	hypothetical protein
71	 32.48	-2	76816..76932	+	38	154174666	-	CCV52592_0343	-	hypothetical protein
72	 45.25	0	76943..79207	+	754	154174273	metE	CCV52592_0342	-	5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase
73	 45.73	0	79270..80205	-	311	154173841	-	CCV52592_0341	-	hypothetical protein
74	 48.62	0	80246..80971	-	241	154175147	-	CCV52592_0340	-	carbon-nitrogen family hydrolase
75	 48.04	0	81241..81750	-	169	154174214	-	CCV52592_0339	-	SNARE associated Golgi protein
76	 47.60	0	81747..82475	-	242	154174205	-	CCV52592_0338	-	glycosyltransferase involved in cell wall biogenesis
77	 40.74	0	82562..83209	-	215	154173668	-	CCV52592_0337	-	putative response regulator ArlR
78	 44.52	0	86424..87692	-	422	154175040	-	CCV52592_0332	-	membrane protein
79	 42.25	0	87830..88693	+	287	154174424	-	CCV52592_0331	-	hypothetical protein
80	 51.13	+1	89014..90834	+	606	154174749	thrS	CCV52592_0330	-	threonyl-tRNA synthetase
81	 49.52	0	90831..91349	+	172	154175144	infC	CCV52592_0329	-	translation initiation factor IF-3
82	 50.96	+1	91452..91922	+	156	154173827	-	CCV52592_2131	-	diamine acetyltransferase 2
83	 36.24	-1	92013..92768	-	251	154173739	-	CCV52592_0756	-	hypothetical protein
84	 50.98	+1	92896..94017	+	373	154174328	proB	CCV52592_0755	-	glutamate 5-kinase
85	 53.57	+1	94028..95356	+	442	154175538	proA	CCV52592_0754	-	gamma-glutamyl phosphate reductase
86	 42.31	0	95576..96466	+	296	154174052	mrr	CCV52592_0753	-	Mrr restriction system protein
87	 54.39	+1	96535..97446	+	303	154174862	proC	CCV52592_0752	-	pyrroline-5-carboxylate reductase
88	 42.86	0	97453..97578	+	41	154175219	-	CCV52592_2132	-	transformation system protein
89	 50.11	+1	97950..98885	+	311	154174022	-	CCV52592_0751	-	hypothetical protein
90	 53.31	+1	98905..99675	+	256	154175316	-	CCV52592_0750	-	putative branched-chain amino acid transport protein
91	 48.94	0	99677..99817	-	46	154174893	-	CCV52592_0749	-	hypothetical protein
92	 51.81	+1	99896..101335	-	479	154174589	-	CCV52592_0748	-	acetyl-CoA carboxylase
93	 49.24	0	101438..101569	-	43	154174147	-	CCV52592_0747	-	hypothetical protein
94	 48.59	0	101592..102194	-	200	154175444	-	CCV52592_0746	-	RNA polymerase sigma factor RpoD
95	 43.45	0	102226..102660	-	144	154175056	-	CCV52592_0745	-	flagellin
96	 45.00	0	102670..103029	-	119	154174799	-	CCV52592_0744	-	TM2
97	 45.19	0	103065..103511	-	148	154174466	lspA	CCV52592_0743	-	lipoprotein signal peptidase
98	 46.91	0	103504..104844	-	446	154173619	glmM	CCV52592_0742	-	phosphoglucosamine mutase
99	 40.00	0	105016..105285	+	89	154174486	rpsT	CCV52592_0741	-	30S ribosomal protein S20
100	 49.63	0	105295..106362	+	355	154174699	prfA	CCV52592_0740	-	peptide chain release factor 1
44.26	MEAN

5.45	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.