IslandPath Analysis: Xanthomonas axonopodis pv. citri str. 306



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 64.79   STD DEV: 3.85
Xanthomonas axonopodis pv. citri str. 306, complete genome - 1..5175554
4312 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 65.24	0	42..1370	+	442	21240775	dnaA	XAC0001	-	chromosomal replication initiation protein
2	 62.49	0	1647..2747	+	366	21240776	dnaN	XAC0002	-	DNA polymerase III subunit beta
3	 65.40	0	3799..4905	+	368	21240777	recF	XAC0003	-	recombination protein F
4	 64.95	0	5020..7464	+	814	21240778	gyrB	XAC0004	-	DNA gyrase subunit B
5	 67.98	0	7685..8368	+	227	21240779	-	XAC0005	-	hypothetical protein
6	 64.44	0	8552..9358	+	268	21240780	-	XAC0006	-	hypothetical protein
7	 60.13	-1	9636..10829	+	397	21240781	-	XAC0007	-	hypothetical protein
8	 64.43	0	10983..11654	+	223	21240782	tonB	XAC0008	-	TonB protein
9	 64.96	0	11740..12501	+	253	21240783	exbB	XAC0009	-	biopolymer transport ExbB protein
10	 59.57	-1	12548..12970	+	140	21240784	exbD1	XAC0010	-	biopolymer transport ExbD1 protein
11	 59.66	-1	12974..13387	+	137	21240785	exbD2	XAC0011	-	biopolymer transport ExbD2 protein
12	 65.23	0	13649..14416	-	255	21240786	pdxJ	XAC0012	-	pyridoxal phosphate biosynthetic protein PdxJ
13	 69.37	+1	14424..14756	-	110	21240787	-	XAC0013	-	hypothetical protein
14	 66.46	0	14768..16228	-	486	21240788	cls	XAC0014	-	cardiolipin synthetase
15	 54.39	-2	16671..17330	+	219	21240789	-	XAC0015	-	hypothetical protein
16	 56.01	-2	17330..17920	+	196	21240790	-	XAC0016	-	hypothetical protein
17	 65.07	0	18131..19258	-	375	21240791	-	XAC0017	-	hypothetical protein
18	 63.53	0	19442..20143	-	233	77748500	-	XAC0018	-	hypothetical protein
19	 67.11	0	20413..21753	-	446	21240793	ompP1	XAC0019	-	outer membrane protein
20	 67.68	0	21972..22664	+	230	21240794	-	XAC0020	-	hypothetical protein
21	 60.12	-1	22773..23093	+	106	21240795	-	XAC0021	-	hypothetical protein
22	 69.39	+1	23093..24085	+	330	21240796	serA	XAC0022	-	D-3-phosphoglycerate dehydrogenase
23	 68.50	0	24251..25777	-	508	21240797	ctp	XAC0023	-	carboxyl-terminal protease
24	 67.56	0	25882..27117	-	411	21240798	-	XAC0024	-	hypothetical protein
25	 65.14	0	27278..27934	+	218	21240799	-	XAC0025	-	hypothetical protein
26	 67.06	0	28096..29892	+	598	21240800	-	XAC0026	-	hypothetical protein
27	 63.74	0	30212..30655	-	147	21240801	-	XAC0027	-	hypothetical protein
28	 61.90	0	30948..32081	-	377	21240802	egl	XAC0028	-	cellulase
29	 61.25	0	32718..33770	-	350	21240803	egl	XAC0029	-	cellulase
30	 63.04	0	34548..35621	-	357	21240804	egl	XAC0030	-	cellulase
31	 64.78	0	35929..36987	+	352	21240805	yahK	XAC0031	-	alcohol dehydrogenase
32	 68.15	0	37522..39003	-	493	21240806	gltD	XAC0032	-	glutamate synthase subunit beta
33	 67.76	0	39132..43604	-	1490	21240807	gltB	XAC0033	-	glutamate synthase subunit alpha
34	 65.46	0	43807..44220	-	137	21240808	-	XAC0034	-	hypothetical protein
35	 65.01	0	44433..45521	+	362	21240809	-	XAC0035	-	hypothetical protein
36	 66.96	0	45728..46072	-	114	21240810	-	XAC0036	-	hypothetical protein
37	 64.91	0	46368..47507	+	379	21240811	-	XAC0037	-	penicillin acylase
38	 64.37	0	47588..48457	-	289	21240812	-	XAC0038	-	hypothetical protein
39	 65.53	0	48629..49504	+	291	21240813	-	XAC0039	-	transcriptional regulator
40	 66.08	0	49519..50031	-	170	21240814	-	XAC0040	-	hypothetical protein
41	 64.30	0	50146..51288	+	380	21240815	wbdB	XAC0041	-	mannosyltransferase B
42	 62.57	0	51285..52457	+	390	21240816	wbpZ	XAC0042	-	glycosyltransferase
43	 66.52	0	52524..53933	+	469	21240817	wcaJ	XAC0043	-	UDP-glucose lipid carrier transferase
44	 65.86	0	53953..55071	+	372	21240818	bplD	XAC0044	-	lipopolysaccharide biosynthesis protein
45	 66.82	0	55159..56427	-	422	21240819	-	XAC0045	-	hypothetical protein
46	 68.13	0	56424..57854	-	476	77748501	rffM	XAC0046	-	UDP-N-acetyl-D-mannosamine transferase
47	 66.76	0	57197..58276	-	359	21240821	-	XAC0047	-	galactosyltransferase
48	 67.89	0	58280..59671	-	463	21240822	-	XAC0048	-	hypothetical protein
49	 70.69	+1	59608..60900	-	430	21240823	-	XAC0049	-	hypothetical protein
50	 67.69	0	60851..61633	-	260	21240824	-	XAC0050	-	hypothetical protein
51	 66.61	0	61865..63706	-	613	21240825	asnB	XAC0051	-	asparagine synthase
52	 68.62	0	63759..65141	-	460	21240826	-	XAC0052	-	hypothetical protein
53	 62.98	0	65102..65941	-	279	21240827	-	XAC0053	-	methyltransferase
54	 68.97	+1	66191..67147	-	318	21240828	rmd	XAC0054	-	degenerated UDP-glucose epimerase
55	 67.12	0	67144..68472	-	442	21240829	-	XAC0055	-	hypothetical protein
56	 70.89	+1	68506..69735	-	409	21240830	-	XAC0056	-	polysaccharide export protein
57	 68.90	+1	69732..71480	-	582	21240831	hetA	XAC0057	-	transport protein
58	 72.19	+1	71477..71965	-	162	21240832	-	XAC0058	-	hypothetical protein
59	 69.37	+1	72303..74228	-	641	21240833	asn	XAC0059	-	asparagine synthetase like protein
60	 66.42	0	74626..75426	+	266	21240834	-	XAC0060	-	hypothetical protein
61	 62.39	0	75448..75774	+	108	21240835	-	XAC0061	-	hypothetical protein
62	 66.34	0	75798..76718	+	306	21240836	-	XAC0062	-	hypothetical protein
63	 67.03	0	76715..77539	+	274	21240837	-	XAC0063	-	aryl sulfotransferase
64	 66.31	0	77555..78121	-	188	21240838	-	XAC0064	-	acetyltransferase
65	 64.29	0	78079..78666	-	195	21240839	-	XAC0065	-	microcystin dependent protein
66	 65.22	0	78691..79242	-	183	21240840	-	XAC0066	-	microcystin dependent protein
67	 65.57	0	79267..79812	-	181	77748502	mdpB	XAC0067	-	microcystin dependent protein
68	 65.93	0	80281..81369	+	362	21240842	-	XAC0068	-	hypothetical protein
69	 66.67	0	81857..82243	+	128	21240843	mecI	XAC0069	-	methicillin resistance protein
70	 69.34	+1	82247..83968	+	573	21240844	-	XAC0070	-	ankyrin-like protein
71	 67.05	0	84643..85683	+	346	21240845	-	XAC0071	-	hypothetical protein
72	 68.70	+1	85767..86897	+	376	21240846	-	XAC0072	-	hypothetical protein
73	 63.87	0	87037..87822	-	261	21240847	-	XAC0073	-	hypothetical protein
74	 67.91	0	87833..90397	-	854	77748503	cirA	XAC0074	-	TonB-dependent receptor
75	 68.31	0	90593..91750	+	385	21240849	xylR	XAC0075	-	xylose repressor-like protein
76	 64.15	0	91940..94084	+	714	21240850	avrBs2	XAC0076	-	avirulence protein
77	 68.95	+1	94574..96061	-	495	77748504	-	XAC0077	-	hypothetical protein
78	 66.79	0	96058..98466	-	802	21240852	-	XAC0078	-	ATP-dependent RNA helicase
79	 65.75	0	98737..99393	+	218	21240853	-	XAC0079	-	hemolysin III
80	 59.30	-1	99461..99718	+	85	21240854	-	XAC0080	-	hypothetical protein
81	 60.33	-1	99706..100005	+	99	21240855	-	XAC0081	-	hypothetical protein
82	 69.11	+1	100185..101084	-	299	21240856	-	XAC0082	-	short chain oxidoreductase
83	 66.80	0	101144..101881	-	245	21240857	-	XAC0083	-	short chain dehydrogenase
84	 66.67	0	102007..102918	+	303	21240858	yhjC	XAC0084	-	LysR family transcriptional regulator
85	 61.78	0	103084..104085	-	333	21240859	-	XAC0085	-	hypothetical protein
86	 61.82	0	104350..104865	+	171	21240860	-	XAC0086	-	hypothetical protein
87	 62.93	0	105104..105424	+	106	21240861	-	XAC0087	-	hypothetical protein
88	 61.43	0	105661..106137	-	158	21240862	-	XAC0088	-	NAD(P)H oxidoreductase
89	 42.48	-2	106232..107182	-	316	21240863	abiR	XAC0089	-	abortive infection phage resistance protein
90	 62.27	0	107220..107492	+	90	21240864	-	XAC0090	-	ISxac3 transposase
91	 62.58	0	107546..108352	+	268	21240865	-	XAC0091	-	ISxac3 transposase
92	 42.84	-2	108392..109222	-	276	21240866	-	XAC0092	-	hypothetical protein
93	 61.98	0	109267..110481	-	404	21240867	-	XAC0093	-	ISxac1 transposase
94	 62.65	0	110518..111015	+	165	21240868	-	XAC0094	-	hypothetical protein
95	 64.86	0	111185..111406	-	73	21240869	-	XAC0095	-	hypothetical protein
96	 56.05	-2	111806..113746	-	646	21240870	-	XAC0096	-	hypothetical protein
97	 50.39	-2	113716..114354	-	212	21240871	-	XAC0097	-	hypothetical protein
98	 44.98	-2	114472..114780	-	102	21240872	-	XAC0098	-	hypothetical protein
99	 64.06	0	115510..115893	-	127	21240873	-	XAC0099	-	hypothetical protein
100	 59.79	-1	116066..116254	-	62	21240874	-	XAC0100	-	hypothetical protein
64.79	MEAN

3.85	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.