IslandPath Analysis: Burkholderia pseudomallei 1106a



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 67.62   STD DEV: 5.36
Burkholderia pseudomallei 1106a chromosome I, complete sequence - 1..3988455
4019 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 62.28	0	1..1116	-	371	126452997	-	BURPS1106A_0001	-	carboxylate-amine ligase
2	 66.34	0	1161..2375	-	404	126451647	-	BURPS1106A_0002	-	monovalent cation:proton antiporter-2 (CPA2) family protein
3	 71.44	0	3114..5249	-	711	126455325	mnmC	BURPS1106A_0003	-	5-methylaminomethyl-2-thiouridine methyltransferase
4	 62.01	-1	5488..5766	+	92	126453925	hupA	BURPS1106A_0004	-	DNA-binding protein HU-alpha
5	 67.79	0	5869..7209	-	446	126452541	-	BURPS1106A_0005	-	CobW/P47K family protein
6	 61.93	-1	7528..8013	-	161	126455047	-	BURPS1106A_0006	-	putative invasion protein
7	 66.80	0	8395..10668	+	757	126454161	gspD	BURPS1106A_0007	-	general secretion pathway protein D
8	 69.68	0	10665..12158	+	497	126454977	gspE	BURPS1106A_0008	-	general secretory pathway protein E
9	 68.80	0	12163..13380	+	405	126454081	gspF	BURPS1106A_0009	-	general secretion pathway protein F
10	 71.29	0	13452..13862	-	136	126452667	gspC	BURPS1106A_0010	-	general secretion pathway protein C
11	 58.33	-1	13861..13992	+	43	126453917	-	BURPS1106A_0011	-	hypothetical protein
12	 62.47	0	14010..14462	+	150	126452305	gspG	BURPS1106A_0012	-	general secretion pathway protein G
13	 72.50	0	14497..15096	+	199	126455158	gspH	BURPS1106A_0013	-	general secretion pathway protein H
14	 71.78	0	15093..15503	+	136	126455288	gspI	BURPS1106A_0014	-	general secretion pathway protein I
15	 72.02	0	15481..16209	+	242	126454552	gspJ	BURPS1106A_0015	-	general secretion pathway protein J
16	 71.46	0	16211..17461	+	416	126452956	gspK	BURPS1106A_0016	-	general secretion pathway protein K
17	 73.69	+1	17507..18916	+	469	126454319	gspL	BURPS1106A_0017	-	general secretion pathway protein L
18	 70.08	0	18892..19419	+	175	126454827	gspM	BURPS1106A_0018	-	general secretory pathway protein M
19	 70.58	0	19458..20249	+	263	126452123	gspN	BURPS1106A_0019	-	general secretory pathway protein N
20	 73.90	+1	20494..22110	-	538	126452553	-	BURPS1106A_0020	-	NodT family efflux transporter outer membrane lipoprotein
21	 73.99	+1	22332..22604	-	90	126452562	-	BURPS1106A_0021	-	hypothetical protein
22	 69.68	0	22797..23294	+	165	126454172	-	BURPS1106A_0022	-	MarR family transcriptional regulator
23	 66.79	0	23442..25004	+	520	126455044	-	BURPS1106A_0023	-	EmrB/QacA family drug resistance transporter
24	 70.67	0	25064..25987	-	307	126452277	-	BURPS1106A_0024	-	LysR family transcriptional regulator
25	 75.80	+1	26127..26597	+	156	126452971	-	BURPS1106A_0025	-	LrgA family protein
26	 68.88	0	26666..27388	+	240	126454133	-	BURPS1106A_0026	-	LrgB-like family protein
27	 80.83	+2	27877..28116	-	79	126451729	-	BURPS1106A_0027	-	hypothetical protein
28	 66.67	0	28217..28714	+	165	126452861	fliL	BURPS1106A_0028	-	flagellar basal body-associated protein FliL
29	 63.26	0	28737..29735	+	332	126453439	fliM	BURPS1106A_0029	-	flagellar motor switch protein FliM
30	 68.07	0	29728..30225	+	165	126454703	fliN	BURPS1106A_0030	-	flagellar motor switch protein FliN
31	 76.88	+1	30222..30887	+	221	126452949	-	BURPS1106A_0031	-	flagellar biosynthesis protein FliO
32	 66.79	0	30889..31719	+	276	126453057	fliP	BURPS1106A_0032	-	flagellar biosynthesis protein FliP
33	 67.77	0	31745..32017	+	90	126454577	fliQ	BURPS1106A_0033	-	flagellar biosynthesis protein FliQ
34	 67.94	0	32136..32918	+	260	126455304	fliR	BURPS1106A_0034	-	flagellar biosynthetic protein FliR
35	 72.73	0	33238..33666	-	142	126452153	-	BURPS1106A_0035	-	MerR family transcriptional regulator
36	 72.26	0	33748..34623	+	291	126453010	-	BURPS1106A_0036	-	putative methyltransferase
37	 76.63	+1	34616..35137	+	173	126454837	-	BURPS1106A_0037	-	hypothetical protein
38	 66.67	0	35295..36308	+	337	126455050	-	BURPS1106A_0038	-	hypothetical protein
39	 66.04	0	36392..37189	+	265	126452146	-	BURPS1106A_0039	-	ABC transporter, ATP-binding protein
40	 67.84	0	37217..38065	+	282	126453348	-	BURPS1106A_0040	-	ABC transporter, permease protein
41	 71.38	0	38143..39522	+	459	126454126	-	BURPS1106A_0041	-	sensor histidine kinase
42	 67.40	0	39533..40210	+	225	126451555	-	BURPS1106A_0042	-	DNA-binding response regulator
43	 61.90	-1	40377..40544	-	55	126452167	-	BURPS1106A_0043	-	hypothetical protein
44	 65.20	0	40500..41660	+	386	126454428	-	BURPS1106A_0044	-	putative porin
45	 73.22	+1	41696..41878	+	60	126453561	-	BURPS1106A_0045	-	hypothetical protein
46	 68.29	0	42115..44148	+	677	126452068	-	BURPS1106A_0046	-	type III DNA modification methyltransferase
47	 68.18	0	44189..47218	+	1009	126453237	-	BURPS1106A_0047	-	Type III restriction enzyme, res subunit
48	 69.28	0	47459..47611	+	50	126451908	-	BURPS1106A_0048	-	hypothetical protein
49	 66.21	0	47756..48856	+	366	126454786	-	BURPS1106A_0049	-	putative porin
50	 66.56	0	49256..50215	+	319	126454299	-	BURPS1106A_0050	-	putative transcriptional regulator
51	 71.04	0	50338..51069	-	243	126454494	-	BURPS1106A_0051	-	ABC transporter, ATP-binding protein
52	 77.19	+1	51054..51452	-	132	126452361	-	BURPS1106A_0052	-	hypothetical protein
53	 70.68	0	51442..52164	-	240	126454078	-	BURPS1106A_0053	-	ABC transporter, ATP-binding protein
54	 73.43	+1	52161..53210	-	349	126455437	-	BURPS1106A_0054	-	ABC transporter, permease protein
55	 72.92	0	53207..54085	-	292	126452864	-	BURPS1106A_0055	-	ABC transporter, permease protein
56	 67.70	0	54090..55349	-	419	126452961	-	BURPS1106A_0056	-	putative ABC transporter, substrate-binding protein
57	 70.52	0	55566..57071	-	501	126453750	-	BURPS1106A_0057	-	putative phenylacetaldehyde dehydrogenase
58	 67.43	0	57126..57518	-	130	126454852	-	BURPS1106A_0058	-	hypothetical protein
59	 67.65	0	57529..58338	-	269	126451520	-	BURPS1106A_0059	-	hypothetical protein
60	 73.31	+1	58384..59181	-	265	126452583	-	BURPS1106A_0060	-	short chain dehydrogenase/reductase family oxidoreductase
61	 69.96	0	59266..60936	-	556	126453283	-	BURPS1106A_0061	-	GMC oxidoreductase
62	 64.62	0	61663..62004	+	113	126452383	-	BURPS1106A_0062	-	PadR family transcriptional regulator
63	 69.95	0	62001..63188	+	395	126451988	-	BURPS1106A_0063	-	hypothetical protein
64	 59.17	-1	63268..63387	+	39	126455307	-	BURPS1106A_0064	-	hypothetical protein
65	 60.13	-1	63532..63837	-	101	126453760	-	BURPS1106A_0065	-	hypothetical protein
66	 70.11	0	63861..64847	-	328	126452876	-	BURPS1106A_0066	-	fatty acid desaturase family protein
67	 72.28	0	64877..65713	-	278	126452984	-	BURPS1106A_0067	-	hypothetical protein
68	 72.11	0	66153..67382	-	409	126453968	-	BURPS1106A_0068	-	AraC family transcriptional regulator
69	 66.93	0	67381..68517	+	378	126455128	-	BURPS1106A_0069	-	acyl-CoA dehydrogenase
70	 78.22	+1	68565..68789	-	74	126452204	-	BURPS1106A_0070	-	hypothetical protein
71	 74.83	+1	68772..68918	+	48	126453086	-	BURPS1106A_0071	-	hypothetical protein
72	 70.98	0	69172..70377	+	401	126454300	-	BURPS1106A_0072	-	acetyl-CoA acetyltransferase
73	 70.86	0	70390..72513	+	707	126454240	-	BURPS1106A_0073	-	putative 3-hydroxyacyl-CoA dehydrogenase
74	 72.22	0	72510..72653	+	47	126455425	-	BURPS1106A_0074	-	hypothetical protein
75	 71.96	0	72919..74052	+	377	126451519	-	BURPS1106A_0075	-	CAIB/BAIF family protein
76	 67.90	0	74129..74695	-	188	126452654	-	BURPS1106A_0076	-	putative lipoprotein
77	 64.74	0	74801..74956	-	51	126452680	-	BURPS1106A_0077	-	hypothetical protein
78	 68.11	0	75043..75528	-	161	126453765	-	BURPS1106A_0078	-	hypothetical protein
79	 67.49	0	75535..76503	+	322	126452333	-	BURPS1106A_0079	-	hypothetical protein
80	 68.83	0	76490..76858	+	122	126453223	-	BURPS1106A_0080	-	putative lipoprotein
81	 58.64	-1	77081..77242	+	53	126451666	-	BURPS1106A_0082	-	hypothetical protein
82	 74.19	+1	77239..77517	-	92	126455423	-	BURPS1106A_0081	-	hypothetical protein
83	 74.70	+1	77544..78302	-	252	126451600	prtR	BURPS1106A_0083	-	transmembrane regulator PrtR
84	 68.41	0	78299..78814	-	171	126452547	-	BURPS1106A_0084	-	sigma-70 family RNA polymerase sigma factor
85	 70.63	0	78975..80060	+	361	126453938	-	BURPS1106A_0085	-	putative catalase
86	 64.77	0	80057..80584	+	175	126454920	-	BURPS1106A_0086	-	putative [Ni] hydrogenase, b-type cytochrome subunit
87	 51.22	-2	81137..82036	+	299	126454298	-	BURPS1106A_0087	-	methionine sulfoxide reductase A
88	 55.56	-2	82233..82385	+	50	126455421	-	BURPS1106A_0088	-	hypothetical protein
89	 56.44	-2	82644..82907	+	87	126451486	-	BURPS1106A_0089	-	transposase subfamily protein
90	 61.11	-1	82931..83092	+	53	126452608	-	BURPS1106A_0090	-	A, transposase OrfB
91	 56.70	-2	83097..83387	+	96	126452362	-	BURPS1106A_0091	-	transposase A
92	 62.46	0	83381..84235	+	284	126451517	-	BURPS1106A_0092	-	transposase B
93	 55.08	-2	84389..85225	-	278	126453892	-	BURPS1106A_0093	-	hypothetical protein
94	 60.66	-1	85693..86940	-	415	126452777	-	BURPS1106A_0094	-	hypothetical protein
95	 59.26	-1	87362..87685	+	107	126452186	-	BURPS1106A_0095	-	XRE family transcriptional regulator
96	 58.62	-1	87678..88547	+	289	126455121	-	BURPS1106A_0096	-	hypothetical protein
97	 58.36	-1	88777..91245	+	822	126453526	-	BURPS1106A_0097	-	type I restriction-modification system M subunit
98	 52.85	-2	91595..92542	+	315	126452645	-	BURPS1106A_0098	-	restriction endonuclease S subunits
99	 59.66	-1	92566..95835	+	1089	126453319	-	BURPS1106A_0099	-	type I site-specific deoxyribonuclease HsdR
100	 59.78	-1	95976..96527	+	183	126452415	-	BURPS1106A_0100	-	hypothetical protein
67.62	MEAN

5.36	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.