IslandPath Analysis: Rickettsia prowazekii str. Madrid E



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 30.02   STD DEV: 3.38
Rickettsia prowazekii str. Madrid E, complete genome - 1..1111523
835 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 26.28	-1	1..822	+	273	15603882	-	RP001	-	hypothetical protein
2	 29.26	0	906..1298	+	130	15603883	-	RP002	-	thioredoxin (trxA)
3	 27.67	0	1309..2067	+	252	15603884	-	RP003	-	O-antigen export system ATP-binding protein RFBE (rfbE)
4	 26.38	-1	2064..2840	+	258	15603885	-	RP004	-	O-antigen export system permease protein RFBA (rfbA)
5	 27.25	0	2837..3724	+	295	15603886	-	RP005	-	hypothetical protein
6	 29.66	0	3757..5877	+	706	15603887	-	RP006	-	hypothetical protein
7	 33.71	+1	6227..7021	-	264	15603888	-	RP007	-	UDP-N-acetylglucosamine acyltransferase
8	 33.79	+1	7031..7468	-	145	15603889	fabZ	RP008	-	(3R)-hydroxymyristoyl-ACP dehydratase
9	 32.56	0	7659..8699	-	346	15603890	lpxD	RP009	-	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase
10	 35.09	+1	9661..10686	+	341	15603891	-	RP011	-	NIFR3-like protein (nifR3)
11	 26.91	0	10683..11756	+	357	15603892	-	RP012	-	hypothetical protein
12	 27.36	0	11821..12255	-	144	15603893	-	RP013	-	hypothetical protein
13	 24.89	-1	12243..13142	-	299	15603894	-	RP014	-	hypothetical protein
14	 27.15	0	13139..14302	-	387	15603895	-	RP015	-	poly(A) polymerase (pcnB)
15	 31.46	0	15067..15975	+	302	15603896	-	RP016	-	hypothetical protein
16	 30.57	0	15972..17855	+	627	15603897	-	RP017	-	hypothetical protein
17	 28.26	0	17954..18997	+	347	15603898	-	RP018	-	190 kDa antigen precursor
18	 28.37	0	21182..21685	-	167	15603899	-	RP020	-	F0F1 ATP synthase subunit B
19	 23.06	-2	21685..22161	-	158	15603900	-	RP021	-	F0F1 ATP synthase subunit B'
20	 36.44	+1	22174..22398	-	74	15603901	-	RP022	-	F0F1 ATP synthase subunit C
21	 28.26	0	22432..23160	-	242	15603902	-	RP023	-	F0F1 ATP synthase subunit A
22	 24.90	-1	23165..23413	-	82	15603903	-	RP024	-	hypothetical protein
23	 27.96	0	23465..24283	-	272	15603904	-	RP025	-	hypothetical protein
24	 33.33	0	24374..24979	+	201	15603905	-	RP026	-	hypothetical protein
25	 26.88	0	25233..25991	-	252	15603906	-	RP027	-	hypothetical protein
26	 30.15	0	26086..26838	-	250	15603907	-	RP028	-	hypothetical protein
27	 28.53	0	27089..28171	-	360	15603908	recF	RP029	-	recombination protein F
28	 28.64	0	30132..30791	-	219	15603909	-	RP030	-	hypothetical protein
29	 24.48	-1	32622..33197	+	191	15603910	-	RP031	-	SCO2 protein precursor (sco2)
30	 30.18	0	33213..33782	-	189	15603911	-	RP032	-	hypothetical protein
31	 24.51	-1	33843..34499	+	218	15603912	-	RP033	-	hypothetical protein
32	 30.91	0	34755..36077	-	440	15603913	-	RP034	-	hypothetical protein
33	 33.06	0	36622..37347	-	241	15603914	-	RP035	-	acetoacetyl-CoA reductase
34	 34.03	+1	38374..40950	+	858	15603915	-	RP036	-	protein disaggregation chaperone
35	 31.53	0	41533..42696	-	387	15603916	-	RP037	-	O-sialoglycoprotein endopeptidase
36	 29.80	0	42820..44007	-	395	15603917	-	RP038	-	acyl-COA desaturase 1 (aco1)
37	 26.50	-1	44799..45164	+	121	15603918	rpsF	RP039	-	30S ribosomal protein S6
38	 31.60	0	45189..45476	+	95	15603919	rpsR	RP040	-	30S ribosomal protein S18
39	 29.46	0	45488..46003	+	171	15603920	rplI	RP041	-	50S ribosomal protein L9
40	 26.30	-1	46162..47454	+	430	15603921	-	RP042	-	cell cycle protein MESJ (mesJ)
41	 36.10	+1	47505..49418	+	637	15603922	-	RP043	-	cell division protein FTSH (ftsH)
42	 35.75	+1	49663..50448	+	261	15603923	sdhB	RP044	-	succinate dehydrogenase iron-sulfur subunit
43	 29.25	0	50908..51984	-	358	15603924	-	RP045	-	hypothetical protein
44	 29.12	0	51963..52769	-	268	15603925	-	RP046	-	prolipoprotein diacylglyceryl transferase
45	 26.14	-1	52968..54134	+	388	15603926	-	RP047	-	hypothetical protein
46	 28.40	0	54283..55965	+	560	15603927	-	RP048	-	putative inner membrane protein translocase component YidC
47	 26.56	-1	55965..56510	+	181	15603928	-	RP049	-	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase (pgsA)
48	 28.87	0	56520..57101	+	193	15603929	-	RP050	-	hypothetical protein
49	 26.56	-1	57171..57554	-	127	15603930	-	RP051	-	hypothetical protein
50	 28.62	0	58644..58919	-	91	15603931	-	RP052	-	hypothetical protein
51	 29.53	0	59296..60792	+	498	15603932	-	RP053	-	ADP,ATP carrier protein
52	 33.26	0	60865..62154	+	429	15603933	-	RP054	-	glycerol-3-phosphate transporter (glpT)
53	 30.97	0	62317..62739	+	140	15603934	ndk	RP055	-	nucleoside diphosphate kinase
54	 31.19	0	62743..64608	+	621	15603935	-	RP056	-	tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
55	 23.44	-1	64592..65167	+	191	15603936	gidB	RP057	-	glucose-inhibited division protein B
56	 26.95	0	65164..65931	+	255	15603937	-	RP058	-	SOJ protein (soj)
57	 26.83	0	65918..66778	+	286	15603938	-	RP059	-	stage 0 sporulation protein J (spo0J)
58	 29.50	0	66950..68617	+	555	15603939	-	RP060	-	putative ABC transporter ATP-binding protein
59	 19.22	-2	68678..68932	+	84	15603940	-	RP061	-	hypothetical protein
60	 31.64	0	68967..69794	+	275	15603941	-	RP062	-	2-dehydro-3-deoxyphosphooctonate aldolase
61	 30.33	0	71334..71666	-	110	15603942	-	RP063	-	HESB protein (hesB1)
62	 30.12	0	71916..73067	+	383	15603943	-	RP064	-	deoxyguanosinetriphosphate triphosphohydrolase-like protein
63	 32.06	0	73076..74806	+	576	15603944	argS	RP065	-	arginyl-tRNA synthetase
64	 28.40	0	74869..75537	+	222	15603945	-	RP066	-	hypothetical protein
65	 32.88	0	75660..77876	+	738	15603946	-	RP067	-	DNA topoisomerase IV subunit A
66	 32.96	0	78218..79540	-	440	15603947	-	RP068	-	hypothetical protein
67	 32.10	0	79807..80373	+	188	15603948	dcd	RP069	-	deoxycytidine triphosphate deaminase
68	 29.63	0	80570..81028	+	152	15603949	-	RP070	-	preprotein translocase subunit SecB
69	 30.81	0	81225..81938	+	237	15603950	-	RP071	-	transcriptional activator protein CZCR (czcR)
70	 27.01	0	81942..82763	+	273	15603951	queF	RP072	-	7-cyano-7-deazaguanine reductase
71	 32.26	0	82791..83351	-	186	15603952	-	RP073	-	hypothetical protein
72	 33.26	0	83408..84805	-	465	15603953	-	RP074	-	NAD(P) transhydrogenase subunit BETA (pntB)
73	 30.72	0	84904..85707	-	267	15603954	-	RP075	-	hypothetical protein
74	 32.43	0	85783..86667	+	294	15603955	-	RP076	-	hypothetical protein
75	 30.39	0	86654..87910	+	418	15603956	-	RP077	-	proline/betaine transporter (proP1)
76	 30.03	0	88164..88466	+	100	15603957	secG	RP079	-	preprotein translocase subunit SecG
77	 24.84	-1	88459..88611	-	50	15603958	-	RP080	-	hypothetical protein
78	 28.27	0	89074..90099	-	341	15603959	-	RP081	-	190 kDa antigen precursor
79	 30.79	0	90112..90543	-	143	15603960	-	RP082	-	hypothetical protein
80	 26.31	-1	90485..92050	-	521	15603961	-	RP083	-	hypothetical protein
81	 31.12	0	92196..92693	-	165	15603962	-	RP084	-	hypothetical protein
82	 31.15	0	94769..96142	+	457	15603963	cysS	RP085	-	cysteinyl-tRNA synthetase
83	 31.54	0	96550..97440	+	296	15603964	rpsB	RP086	-	30S ribosomal protein S2
84	 30.54	0	97595..98524	+	309	15603965	tsf	RP087	-	elongation factor Ts
85	 29.44	0	98802..98981	+	59	15603966	-	RP088	-	hypothetical protein
86	 29.15	0	99717..101102	-	461	15603967	-	RP089	-	3-deoxy-D-manno-octulosonic-acid transferase
87	 28.92	0	101099..101755	-	218	15603968	-	RP090	-	hypothetical protein
88	 32.45	0	101880..103118	-	412	15603969	-	RP091	-	aspartate aminotransferase
89	 21.79	-2	103293..104297	+	334	15603970	-	RP092	-	hypothetical protein
90	 32.01	0	104302..105057	+	251	15603971	-	RP093	-	VACJ lipoprotein precursor (vacJ)
91	 28.50	0	105077..105676	+	199	15603972	-	RP094	-	hypothetical protein
92	 32.76	0	106459..107673	+	404	15603973	alr	RP095	-	alanine racemase
93	 32.82	0	107825..108604	+	259	15603974	-	RP096	-	hypothetical protein
94	 31.09	0	108607..109365	+	252	15603975	-	RP097	-	ribonucleotide ABC transporter ATP-binding protein
95	 24.21	-1	109367..109618	+	83	15603976	-	RP098	-	hypothetical protein
96	 31.29	0	111301..111594	+	97	15603977	rpmB	RP099	-	50S ribosomal protein L28
97	 31.22	0	111591..111827	+	78	15603978	-	RP100	-	50S ribosomal protein L31
98	 28.99	0	112320..112964	+	214	15603979	-	RP102	-	GTPase EngB
99	 32.09	0	114023..116440	+	805	15603980	-	RP103	-	VIRB4 protein precursor (virB4)
100	 33.13	0	116558..119932	+	1124	15603981	-	RP104	-	hypothetical protein
30.02	MEAN

3.38	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.