IslandPathversion 1.0

IslandPath Analysis: Yersinia pestis Antiqua



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 48.01 STD DEV: 4.91
Yersinia pestis Antiqua, complete genome - 1..4702289
4167 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 42.86	-1	270..710	-	146	108805999	-	YPA_0001	-	flavodoxin
2	 41.34	-1	803..1264	-	153	108806000	-	YPA_0002	-	DNA-binding transcriptional regulator AsnC
3	 45.52	0	1434..2426	+	330	108806001	-	YPA_0003	-	asparagine synthetase AsnA
4	 47.72	0	2525..3991	-	488	108806002	yieM	YPA_0004	-	hypothetical protein
5	 46.71	0	3995..5482	-	495	108806003	-	YPA_0005	-	regulatory ATPase RavA
6	 52.79	0	5552..6574	+	340	108806004	-	YPA_0006	-	transposase for insertion sequence IS100
7	 50.38	0	6574..7353	+	259	108806005	-	YPA_0007	-	transposase/IS protein
8	 45.95	0	7397..7507	-	36	108806006	-	YPA_0008	-	hypothetical protein
9	 45.80	0	7781..9649	+	622	108806007	trkD	YPA_0009	-	potassium transport protein Kup
10	 48.10	0	9854..10273	+	139	108806008	-	YPA_0010	-	D-ribose pyranase
11	 50.05	0	10324..11250	+	308	108806009	-	YPA_0011	-	ribokinase
12	 49.71	0	11303..11473	+	56	108806010	-	YPA_0012	-	hypothetical protein
13	 46.46	0	11470..12894	-	474	108806011	-	YPA_0013	-	putative membrane transport protein
14	 44.01	0	12974..13666	-	230	108806012	-	YPA_0014	-	putative GntR-famly transcriptional regulator
15	 44.52	0	20351..21280	+	309	108806013	-	YPA_0015	-	homoserine O-succinyltransferase
16	 25.00	-2	21480..21623	-	47	108806014	-	YPA_0016	-	hypothetical protein
17	 47.90	0	21701..23299	+	532	108806015	-	YPA_0017	-	malate synthase
18	 51.30	0	23346..24653	+	435	108806016	-	YPA_0018	-	isocitrate lyase
19	 46.41	0	24909..26636	+	575	108806017	aceK	YPA_0019	-	bifunctional isocitrate dehydrogenase kinase/phosphatase protein
20	 53.70	+1	26756..27349	-	197	108806018	-	YPA_0020	-	repressor of aceBA operon
21	 51.92	0	27815..31510	+	1231	108806019	metH	YPA_0021	-	B12-dependent methionine synthase
22	 44.58	0	31606..36513	-	1635	108806020	-	YPA_0022	-	hemolysin
23	 47.47	0	36583..38082	-	499	108806021	-	YPA_0023	-	hemolysin activator protein
24	 46.84	0	38012..38359	-	115	108806022	-	YPA_0024	-	hypothetical protein
25	 52.74	0	38840..40225	-	461	108806023	-	YPA_0025	-	aspartate kinase III
26	 48.69	0	40595..42241	+	548	108806024	pgi	YPA_0026	-	glucose-6-phosphate isomerase
27	 38.97	-1	42376..42783	+	135	108806025	-	YPA_0027	-	phosphate-starvation-inducible protein PsiE
28	 52.75	0	42926..43816	-	296	108806026	malG	YPA_0028	-	maltose transporter permease
29	 48.42	0	43830..45407	-	525	108806027	malF	YPA_0029	-	maltose transporter membrane protein
30	 48.60	0	45594..46805	-	403	108806028	malE	YPA_0030	-	maltose ABC transporter periplasmic protein
31	 53.59	+1	47393..47629	+	78	108806029	-	YPA_0031	-	hypothetical protein
32	 53.51	+1	47633..48742	+	369	108806030	-	YPA_0032	-	maltose/maltodextrin transporter ATP-binding protein
33	 48.66	0	48813..50084	+	423	108806031	lamB	YPA_0033	-	maltoporin
34	 51.64	0	50325..51236	+	303	108806032	-	YPA_0034	-	maltose regulon periplasmic protein
35	 31.87	-2	51575..51985	+	136	108806033	-	YPA_0035	-	hypothetical protein
36	 48.94	0	52137..52655	-	172	108806034	-	YPA_0036	-	hypothetical protein
37	 43.78	0	53179..53676	+	165	108806035	-	YPA_0037	-	hypothetical protein
38	 49.60	0	53744..55225	+	493	108806036	-	YPA_0038	-	hypothetical protein
39	 47.62	0	55232..55672	+	146	108806037	-	YPA_0039	-	hypothetical protein
40	 48.00	0	55672..56898	+	408	108806038	-	YPA_0040	-	hypothetical protein
41	 46.44	0	56788..57573	-	261	108806039	-	YPA_0041	-	transposase for insertion sequence IS1661
42	 47.86	0	57627..58163	-	178	108806040	-	YPA_0042	-	insertion element IS1661 DNA-binding protein
43	 48.52	0	58229..58498	-	89	108806041	rpsO	YPA_0043	-	30S ribosomal protein S15
44	 49.44	0	58620..59594	-	324	108806042	truB	YPA_0044	-	tRNA pseudouridine synthase B
45	 44.53	0	59594..60004	-	136	108806043	rbfA	YPA_0045	-	ribosome-binding factor A
46	 49.60	0	60070..62724	-	884	108806044	infB	YPA_0046	-	translation initiation factor IF-2
47	 49.13	0	62749..64236	-	495	108806045	nusA	YPA_0047	-	transcription elongation factor NusA
48	 46.80	0	64258..64710	-	150	108806046	-	YPA_0048	-	hypothetical protein
49	 48.21	0	65242..65577	-	111	108806047	secG	YPA_0049	-	preprotein translocase subunit SecG
50	 47.65	0	65800..67140	-	446	108806048	glmM	YPA_0050	-	phosphoglucosamine mutase
51	 47.60	0	67150..67983	-	277	108806049	folP	YPA_0051	-	dihydropteroate synthase
52	 46.98	0	68103..70037	-	644	108806050	hflB	YPA_0052	-	ATP-dependent metalloprotease
53	 45.56	0	70094..70723	-	209	108806051	rrmJ	YPA_0053	-	23S rRNA methyltransferase J
54	 43.88	0	70870..71163	+	97	108806052	-	YPA_0054	-	hypothetical protein
55	 42.35	-1	71291..71767	-	158	108806053	greA	YPA_0055	-	transcription elongation factor GreA
56	 48.24	0	72025..73473	+	482	108806054	-	YPA_0056	-	D-alanyl-D-alanine carboxypeptidase/endopeptidase
57	 49.32	0	73479..74141	+	220	108806055	-	YPA_0057	-	DNA-binding transcriptional regulator BasR
58	 46.82	0	74138..75205	+	355	108806056	-	YPA_0058	-	sensor protein BasS/PmrB
59	 48.93	0	75300..76472	-	390	108806057	obgE	YPA_0059	-	GTPase ObgE
60	 48.63	0	76473..77459	-	328	108806058	-	YPA_0060	-	hypothetical protein
61	 48.84	0	77547..77804	-	85	108806059	rpmA	YPA_0061	-	50S ribosomal protein L27
62	 45.51	0	77824..78135	-	103	108806060	rplU	YPA_0062	-	50S ribosomal protein L21
63	 48.97	0	78395..79366	+	323	108806061	-	YPA_0063	-	octaprenyl diphosphate synthase
64	 46.84	0	79463..79810