IslandPath Analysis: Yersinia pestis Antiqua



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 48.01   STD DEV: 4.91
Yersinia pestis Antiqua, complete genome - 1..4702289
4167 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 42.86	-1	270..710	-	146	108805999	-	YPA_0001	-	flavodoxin
2	 41.34	-1	803..1264	-	153	108806000	-	YPA_0002	-	DNA-binding transcriptional regulator AsnC
3	 45.52	0	1434..2426	+	330	108806001	-	YPA_0003	-	asparagine synthetase AsnA
4	 47.72	0	2525..3991	-	488	108806002	yieM	YPA_0004	-	hypothetical protein
5	 46.71	0	3995..5482	-	495	108806003	-	YPA_0005	-	regulatory ATPase RavA
6	 52.79	0	5552..6574	+	340	108806004	-	YPA_0006	-	transposase for insertion sequence IS100
7	 50.38	0	6574..7353	+	259	108806005	-	YPA_0007	-	transposase/IS protein
8	 45.95	0	7397..7507	-	36	108806006	-	YPA_0008	-	hypothetical protein
9	 45.80	0	7781..9649	+	622	108806007	trkD	YPA_0009	-	potassium transport protein Kup
10	 48.10	0	9854..10273	+	139	108806008	-	YPA_0010	-	D-ribose pyranase
11	 50.05	0	10324..11250	+	308	108806009	-	YPA_0011	-	ribokinase
12	 49.71	0	11303..11473	+	56	108806010	-	YPA_0012	-	hypothetical protein
13	 46.46	0	11470..12894	-	474	108806011	-	YPA_0013	-	putative membrane transport protein
14	 44.01	0	12974..13666	-	230	108806012	-	YPA_0014	-	putative GntR-famly transcriptional regulator
15	 44.52	0	20351..21280	+	309	108806013	-	YPA_0015	-	homoserine O-succinyltransferase
16	 25.00	-2	21480..21623	-	47	108806014	-	YPA_0016	-	hypothetical protein
17	 47.90	0	21701..23299	+	532	108806015	-	YPA_0017	-	malate synthase
18	 51.30	0	23346..24653	+	435	108806016	-	YPA_0018	-	isocitrate lyase
19	 46.41	0	24909..26636	+	575	108806017	aceK	YPA_0019	-	bifunctional isocitrate dehydrogenase kinase/phosphatase protein
20	 53.70	+1	26756..27349	-	197	108806018	-	YPA_0020	-	repressor of aceBA operon
21	 51.92	0	27815..31510	+	1231	108806019	metH	YPA_0021	-	B12-dependent methionine synthase
22	 44.58	0	31606..36513	-	1635	108806020	-	YPA_0022	-	hemolysin
23	 47.47	0	36583..38082	-	499	108806021	-	YPA_0023	-	hemolysin activator protein
24	 46.84	0	38012..38359	-	115	108806022	-	YPA_0024	-	hypothetical protein
25	 52.74	0	38840..40225	-	461	108806023	-	YPA_0025	-	aspartate kinase III
26	 48.69	0	40595..42241	+	548	108806024	pgi	YPA_0026	-	glucose-6-phosphate isomerase
27	 38.97	-1	42376..42783	+	135	108806025	-	YPA_0027	-	phosphate-starvation-inducible protein PsiE
28	 52.75	0	42926..43816	-	296	108806026	malG	YPA_0028	-	maltose transporter permease
29	 48.42	0	43830..45407	-	525	108806027	malF	YPA_0029	-	maltose transporter membrane protein
30	 48.60	0	45594..46805	-	403	108806028	malE	YPA_0030	-	maltose ABC transporter periplasmic protein
31	 53.59	+1	47393..47629	+	78	108806029	-	YPA_0031	-	hypothetical protein
32	 53.51	+1	47633..48742	+	369	108806030	-	YPA_0032	-	maltose/maltodextrin transporter ATP-binding protein
33	 48.66	0	48813..50084	+	423	108806031	lamB	YPA_0033	-	maltoporin
34	 51.64	0	50325..51236	+	303	108806032	-	YPA_0034	-	maltose regulon periplasmic protein
35	 31.87	-2	51575..51985	+	136	108806033	-	YPA_0035	-	hypothetical protein
36	 48.94	0	52137..52655	-	172	108806034	-	YPA_0036	-	hypothetical protein
37	 43.78	0	53179..53676	+	165	108806035	-	YPA_0037	-	hypothetical protein
38	 49.60	0	53744..55225	+	493	108806036	-	YPA_0038	-	hypothetical protein
39	 47.62	0	55232..55672	+	146	108806037	-	YPA_0039	-	hypothetical protein
40	 48.00	0	55672..56898	+	408	108806038	-	YPA_0040	-	hypothetical protein
41	 46.44	0	56788..57573	-	261	108806039	-	YPA_0041	-	transposase for insertion sequence IS1661
42	 47.86	0	57627..58163	-	178	108806040	-	YPA_0042	-	insertion element IS1661 DNA-binding protein
43	 48.52	0	58229..58498	-	89	108806041	rpsO	YPA_0043	-	30S ribosomal protein S15
44	 49.44	0	58620..59594	-	324	108806042	truB	YPA_0044	-	tRNA pseudouridine synthase B
45	 44.53	0	59594..60004	-	136	108806043	rbfA	YPA_0045	-	ribosome-binding factor A
46	 49.60	0	60070..62724	-	884	108806044	infB	YPA_0046	-	translation initiation factor IF-2
47	 49.13	0	62749..64236	-	495	108806045	nusA	YPA_0047	-	transcription elongation factor NusA
48	 46.80	0	64258..64710	-	150	108806046	-	YPA_0048	-	hypothetical protein
49	 48.21	0	65242..65577	-	111	108806047	secG	YPA_0049	-	preprotein translocase subunit SecG
50	 47.65	0	65800..67140	-	446	108806048	glmM	YPA_0050	-	phosphoglucosamine mutase
51	 47.60	0	67150..67983	-	277	108806049	folP	YPA_0051	-	dihydropteroate synthase
52	 46.98	0	68103..70037	-	644	108806050	hflB	YPA_0052	-	ATP-dependent metalloprotease
53	 45.56	0	70094..70723	-	209	108806051	rrmJ	YPA_0053	-	23S rRNA methyltransferase J
54	 43.88	0	70870..71163	+	97	108806052	-	YPA_0054	-	hypothetical protein
55	 42.35	-1	71291..71767	-	158	108806053	greA	YPA_0055	-	transcription elongation factor GreA
56	 48.24	0	72025..73473	+	482	108806054	-	YPA_0056	-	D-alanyl-D-alanine carboxypeptidase/endopeptidase
57	 49.32	0	73479..74141	+	220	108806055	-	YPA_0057	-	DNA-binding transcriptional regulator BasR
58	 46.82	0	74138..75205	+	355	108806056	-	YPA_0058	-	sensor protein BasS/PmrB
59	 48.93	0	75300..76472	-	390	108806057	obgE	YPA_0059	-	GTPase ObgE
60	 48.63	0	76473..77459	-	328	108806058	-	YPA_0060	-	hypothetical protein
61	 48.84	0	77547..77804	-	85	108806059	rpmA	YPA_0061	-	50S ribosomal protein L27
62	 45.51	0	77824..78135	-	103	108806060	rplU	YPA_0062	-	50S ribosomal protein L21
63	 48.97	0	78395..79366	+	323	108806061	-	YPA_0063	-	octaprenyl diphosphate synthase
64	 46.84	0	79463..79810	-	115	108806062	-	YPA_0064	-	hypothetical protein
65	 49.64	0	79994..80269	+	91	108806063	-	YPA_0065	-	putative DNA-binding protein
66	 47.71	0	80703..81641	-	312	108806064	-	YPA_0066	-	malate dehydrogenase
67	 45.22	0	82105..82575	+	156	108806065	-	YPA_0067	-	arginine repressor
68	 40.91	-1	82964..83227	+	87	108806066	-	YPA_0068	-	hypothetical protein
69	 50.04	0	83523..84905	-	460	108806067	-	YPA_0069	-	UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- me so-diaminopimelate ligase
70	 46.45	0	85076..86089	+	337	108806068	-	YPA_0070	-	fructose-1,6-bisphosphatase
71	 46.78	0	86289..86816	+	175	108806069	-	YPA_0071	-	inorganic pyrophosphatase
72	 45.94	0	86934..87290	-	118	108806070	-	YPA_0072	-	hypothetical protein
73	 52.35	0	87293..91210	-	1305	108806071	-	YPA_0073	-	hypothetical protein
74	 51.35	0	91207..92943	-	578	108806072	-	YPA_0074	-	hypothetical protein
75	 53.21	+1	93218..93856	+	212	108806073	-	YPA_0075	-	methionine sulfoxide reductase A
76	 46.25	0	94134..95465	+	443	108806074	-	YPA_0076	-	hypothetical protein
77	 45.54	0	95573..95785	-	70	108806075	-	YPA_0077	-	hypothetical protein
78	 45.92	0	96121..96684	+	187	108806076	-	YPA_0078	-	hypothetical protein
79	 53.71	+1	96687..97427	-	246	108806077	-	YPA_0079	-	PAPS (adenosine 3'-phosphate 5'-phosphosulfate) 3'(2'),5'-bisphosphate nucleotidase
80	 48.39	0	97874..99832	+	652	108806078	cpdB	YPA_0080	-	bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase periplasmic precursor protein
81	 48.80	0	99987..100652	+	221	108806079	-	YPA_0081	-	cell morphogenesis/cell wall metabolism regulator
82	 52.01	0	100750..101370	-	206	108806080	-	YPA_0082	-	peptidyl-prolyl cis-trans isomerase
83	 51.28	0	101712..102452	+	246	108806081	-	YPA_0083	-	hypothetical protein
84	 45.18	0	102592..103047	+	151	108806082	-	YPA_0084	-	hypothetical protein
85	 45.97	0	103169..103627	-	152	108806083	-	YPA_0085	-	transposase for the IS1541 insertion element
86	 49.45	0	103823..104275	-	150	108806084	rplI	YPA_0086	-	50S ribosomal protein L9
87	 47.37	0	104315..104542	-	75	108806085	rpsR	YPA_0087	-	30S ribosomal protein S18
88	 47.66	0	104547..104867	-	106	108806086	-	YPA_0088	-	primosomal replication protein N
89	 50.89	0	104873..105265	-	130	108806087	rpsF	YPA_0089	-	30S ribosomal protein S6
90	 43.73	0	105279..105557	-	92	108806088	-	YPA_0090	-	hypothetical protein
91	 49.72	0	105632..106333	-	233	108806089	-	YPA_0091	-	esterase
92	 52.79	0	106390..107412	+	340	108806090	-	YPA_0092	-	transposase for insertion sequence IS100
93	 50.38	0	107412..108191	+	259	108806091	-	YPA_0093	-	transposase/IS protein
94	 62.96	+2	108789..109004	+	71	108806092	-	YPA_0094	-	hypothetical protein
95	 52.56	0	109156..111792	-	878	108806093	-	YPA_0095	-	phosphoenolpyruvate carboxylase
96	 50.43	0	112166..113329	-	387	108806094	-	YPA_0096	-	acetylornithine deacetylase
97	 50.45	0	113580..114584	+	334	108806095	argC	YPA_0097	-	N-acetyl-gamma-glutamyl-phosphate reductase
98	 50.97	0	114750..115526	+	258	108806096	-	YPA_0098	-	acetylglutamate kinase
99	 50.66	0	115693..117066	+	457	108806097	-	YPA_0099	-	argininosuccinate lyase
100	 44.36	0	117665..120157	+	830	108806098	-	YPA_0100	-	putative TonB dependent receptor protein
48.01	MEAN

4.91	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.