IslandPath Analysis: Listeria welshimeri serovar 6b str. SLCC5334



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 36.29   STD DEV: 3.56
Listeria welshimeri serovar 6b str. SLCC5334, complete genome - 1..2814130
2774 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 36.65	0	318..1673	+	451	116871423	dnaA	lwe0001	-	chromosomal replication initiation protein
2	 33.86	0	1867..3012	+	381	116871424	dnaN	lwe0002	-	DNA polymerase III subunit beta
3	 37.35	0	3120..4463	+	447	116871425	-	lwe0003	-	MATE efflux family protein
4	 37.19	0	4577..4861	+	94	116871426	-	lwe0004	-	hypothetical protein
5	 38.10	0	4868..5980	+	370	116871427	recF	lwe0005	-	recombination protein F
6	 39.05	0	6029..7969	+	646	116871428	gyrB	lwe0006	-	DNA gyrase subunit B
7	 38.28	0	8064..10592	+	842	116871429	gyrA	lwe0007	-	DNA gyrase subunit A
8	 36.50	0	10728..12242	+	504	116871430	-	lwe0008	-	cardiolipin synthetase
9	 33.91	0	12258..12776	+	172	116871431	speG	lwe0009	-	spermidine N1-acetyltransferase
10	 30.83	-1	12777..12896	+	39	116871432	-	lwe0010	-	hypothetical protein
11	 38.49	0	12918..13886	+	322	116871433	mvk	lwe0011	-	mevalonate kinase
12	 38.79	0	13843..14814	+	323	116871434	mvaD	lwe0012	-	mevalonate diphosphate decarboxylase
13	 37.77	0	14792..15874	+	360	116871435	-	lwe0013	-	phosphomevalonate kinase
14	 37.85	0	16218..17324	+	368	116871436	qoxA	lwe0014	-	cytochrome AA3 quinol oxidase, subunit II
15	 39.55	0	17342..19321	+	659	116871437	qoxB	lwe0015	-	cytochrome aa3 quinol oxidase, subunit I
16	 38.24	0	19309..19920	+	203	116871438	qoxC	lwe0016	-	cytochrome aa3 quinol oxidase, subunit III
17	 36.04	0	19922..20254	+	110	116871439	qoxD	lwe0017	-	quinol oxidase AA3, subunit IV
18	 39.47	0	20416..21849	+	477	116871440	-	lwe0018	-	glycosy hydrolase family protein
19	 27.13	-2	21901..22287	-	128	116871441	-	lwe0019	-	putative secreted protein
20	 33.24	0	22334..23437	+	367	116871442	-	lwe0020	-	hypothetical protein
21	 34.03	0	23441..23869	+	142	116871443	-	lwe0021	-	hypothetical protein
22	 37.82	0	23951..24775	-	274	116871444	-	lwe0022	-	SH3 domain-containing protein
23	 31.17	-1	25017..25757	+	246	116871445	-	lwe0023	-	GntR family transcriptional regulator
24	 40.30	+1	25773..26174	+	133	116871446	-	lwe0024	-	PTS system, fructose family, IIA component
25	 35.37	0	26174..26665	+	163	116871447	-	lwe0025	-	PTS system mannose/fructose/sorbose family IIB subunit
26	 40.80	+1	26684..27487	+	267	116871448	-	lwe0026	-	PTS system mannose/fructose/sorbose family IIC subunit
27	 38.20	0	27468..28289	+	273	116871449	-	lwe0027	-	PTS system mannose/fructose/sorbose family IID subunit
28	 40.85	+1	28317..29021	+	234	116871450	-	lwe0028	-	hypothetical protein
29	 37.07	0	29075..29716	+	213	116871451	-	lwe0029	-	CutC family protein
30	 38.64	0	29921..31825	+	634	116871452	-	lwe0030	-	PTS system, beta-glucoside-specific, IIABC component
31	 35.05	0	31905..32780	+	291	116871453	-	lwe0031	-	MccF family protein
32	 38.05	0	33021..33359	+	112	116871454	-	lwe0032	-	hypothetical protein
33	 34.70	0	33550..34209	+	219	116871455	-	lwe0033	-	DedA family protein
34	 36.68	0	34294..35517	+	407	116871456	arcA	lwe0034	-	arginine deiminase
35	 36.05	0	35800..36093	+	97	116871457	rpsF	lwe0035	-	30S ribosomal protein S6
36	 41.95	+1	36149..36682	+	177	116871458	ssb	lwe0036	-	single-strand binding protein
37	 39.17	0	36726..36965	+	79	116871459	rpsR	lwe0037	-	30S ribosomal protein S18
38	 31.54	-1	37119..37733	+	204	116871460	-	lwe0038	-	putative lipoprotein
39	 33.50	0	37990..38604	+	204	116871461	-	lwe0039	-	putative accessory gene regulator protein
40	 27.16	-2	38588..38749	+	53	116871462	-	lwe0040	-	accessory gene regulator protein D, putative
41	 31.49	-1	39002..40141	+	379	116871463	-	lwe0041	-	sensor histidine kinase, accessory gene regulator protein C, putative
42	 32.10	-1	40160..40888	+	242	116871464	-	lwe0042	-	2-components response regulator protein, AlgR/VirR/ComE type
43	 39.51	0	41055..43028	+	657	116871465	-	lwe0043	-	DHH subfamily 1 protein
44	 34.90	0	43031..43477	+	148	116871466	rplI	lwe0044	-	50S ribosomal protein L9
45	 41.83	+1	43502..44854	+	450	116871467	dnaC	lwe0045	-	replicative DNA helicase
46	 37.97	0	45115..46407	+	430	116871468	purA	lwe0046	-	adenylosuccinate synthetase
47	 39.46	0	46748..47041	+	97	116871469	-	lwe0047	-	WXG domain-containing protein
48	 35.03	0	47188..50430	+	1080	116871470	-	lwe0048	-	hypothetical protein
49	 35.71	0	50420..50923	+	167	116871471	-	lwe0049	-	putative secreted protein
50	 30.95	-1	50939..51190	+	83	116871472	-	lwe0050	-	hypothetical protein
51	 34.09	0	51212..52408	+	398	116871473	-	lwe0051	-	hypothetical protein
52	 38.07	0	52421..56872	+	1483	116871474	-	lwe0052	-	FtsK/SpoIIIE family protein
53	 29.81	-1	56894..57319	+	141	116871475	-	lwe0053	-	hypothetical protein
54	 30.72	-1	57312..57656	+	114	116871476	-	lwe0054	-	hypothetical protein
55	 33.33	0	57640..59016	+	458	116871477	-	lwe0055	-	hypothetical protein
56	 27.94	-2	59153..59875	+	240	116871478	-	lwe0056	-	hypothetical protein
57	 29.14	-2	60038..60490	+	150	116871479	-	lwe0057	-	hypothetical protein
58	 28.67	-2	60487..60936	+	149	116871480	-	lwe0058	-	hypothetical protein
59	 30.58	-1	61115..61405	+	96	116871481	-	lwe0059	-	hypothetical protein
60	 33.61	0	61413..62510	+	365	116871482	-	lwe0060	-	putative secreted protein
61	 33.55	0	62957..63415	+	152	116871483	-	lwe0061	-	hypothetical protein
62	 34.31	0	63845..64255	+	136	116871484	-	lwe0062	-	hypothetical protein
63	 35.78	0	64434..65210	+	258	116871485	-	lwe0063	-	putative secreted protein
64	 43.09	+1	65341..65463	+	40	116871486	-	lwe0064	-	hypothetical protein
65	 33.08	0	65538..66317	+	259	116871487	-	lwe0065	-	putative secreted protein
66	 32.97	0	66449..67546	+	365	116871488	-	lwe0066	-	putative secreted protein
67	 33.33	0	67712..68137	+	141	116871489	-	lwe0067	-	hypothetical protein
68	 34.05	0	68272..68829	+	185	116871490	-	lwe0068	-	putative secreted lipoprotein
69	 32.64	-1	68928..69071	+	47	116871491	-	lwe0069	-	hypothetical protein
70	 33.33	0	69085..69657	+	190	116871492	-	lwe0070	-	putative secreted protein
71	 36.67	0	69744..70613	+	289	116871493	-	lwe0071	-	putative lipoprotein
72	 34.83	0	70749..71618	+	289	116871494	-	lwe0072	-	putative lipoprotein
73	 35.06	0	71754..72623	+	289	116871495	-	lwe0073	-	putative lipoprotein
74	 32.44	-1	73104..74003	+	299	116871496	-	lwe0074	-	hypothetical protein
75	 35.84	0	74051..74689	-	212	116871497	-	lwe0075	-	pentapeptide repeat-containing protein
76	 41.69	+1	74820..75776	+	318	116871498	-	lwe0076	-	D-isomer specific 2-hydroxyacid dehydrogenase family protein
77	 21.59	-2	76861..77388	+	175	116871499	-	lwe0077	-	hypothetical protein
78	 29.50	-1	77604..78125	+	173	116871500	-	lwe0078	-	hypothetical protein
79	 22.94	-2	78373..79065	-	230	116871501	-	lwe0079	-	hypothetical protein
80	 35.75	0	80243..86281	+	2012	116871502	-	lwe0080	-	cell wall surface anchor family protein
81	 30.33	-1	86533..87165	+	210	116871503	-	lwe0081	-	hypothetical protein
82	 40.27	+1	87491..88456	+	321	116871504	-	lwe0082	-	PTS system, mannose-specific, IIAB component
83	 42.01	+1	88480..89286	+	268	116871505	-	lwe0083	-	PTS system mannose/fructose/sorbose family IIC subunit
84	 39.91	+1	89308..90219	+	303	116871506	-	lwe0084	-	PTS system, mannose-specific IID component
85	 35.90	0	90345..90734	+	129	116871507	-	lwe0085	-	hypothetical protein
86	 32.76	0	90867..91217	+	116	116871508	-	lwe0086	-	hypothetical protein
87	 34.32	0	91260..92777	-	505	116871509	-	lwe0087	-	pyruvyl-transferase domain-containing protein
88	 32.65	-1	92894..93184	-	96	116871510	-	lwe0088	-	ArsR family transcriptional regulator
89	 35.42	0	93300..93587	+	95	116871511	-	lwe0089	-	monooxygenase family protein
90	 39.65	0	93601..94233	+	210	116871512	-	lwe0090	-	nitroreductase family protein
91	 32.80	0	94328..94702	+	124	116871513	-	lwe0091	-	hypothetical protein
92	 33.33	0	94892..95260	+	122	116871514	-	lwe0092	-	hypothetical protein
93	 40.65	+1	95540..97822	+	760	116871515	-	lwe0093	-	chitinase B
94	 37.61	0	97966..98853	+	295	116871516	-	lwe0094	-	ROK family protein
95	 34.00	0	98867..99016	+	49	116871517	-	lwe0095	-	hypothetical protein
96	 37.15	0	100524..102305	-	593	116871518	-	lwe0098	-	ABC transporter, ATP-binding/permease protein
97	 36.83	0	102298..104040	-	580	116871519	-	lwe0099	-	ABC transporter, ATP-binding/permease protein
98	 34.05	0	104183..105016	+	277	116871520	-	lwe0100	-	AraC family transcriptional regulator
99	 38.34	0	105056..106174	+	372	116871521	-	lwe0101	-	lipase
100	 33.05	0	106287..106985	+	232	116871522	-	lwe0102	-	EAL domain-containing protein
36.29	MEAN

3.56	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.