IslandPath Analysis: Staphylococcus aureus subsp. aureus Mu50



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 33.03   STD DEV: 3.33
Staphylococcus aureus subsp. aureus Mu50, complete genome - 1..2878529
2697 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 32.67	0	517..1878	+	453	15922991	dnaA	SAV0001	-	chromosomal replication initiation protein
2	 32.80	0	2156..3289	+	377	15922992	dnaN	SAV0002	-	DNA polymerase III subunit beta
3	 35.37	0	3670..3915	+	81	15922993	-	SAV0003	-	hypothetical protein
4	 33.69	0	3912..5024	+	370	15922994	recF	SAV0004	-	recombination protein F
5	 36.95	+1	5034..6968	+	644	15922995	gyrB	SAV0005	-	DNA gyrase subunit B
6	 36.67	+1	7005..9674	+	889	15922996	gyrA	SAV0006	-	DNA gyrase subunit A
7	 36.58	+1	9762..10592	-	276	15922997	-	SAV0007	-	hypothetical protein
8	 37.03	+1	10900..12414	+	504	161375866	hutH	SAV0008	-	histidine ammonia-lyase
9	 34.42	0	12793..14079	+	428	15922999	serS	SAV0009	-	seryl-tRNA synthetase
10	 37.07	+1	14730..15425	+	231	15923000	-	SAV0010	-	hypothetical protein
11	 33.94	0	15422..15751	+	109	15923001	-	SAV0011	-	hypothetical protein
12	 35.45	0	16094..17083	+	329	15923002	-	SAV0012	-	putative homoserine-o-acetyltransferase
13	 32.43	0	17319..18314	+	331	15923003	-	SAV0013	-	hypothetical protein
14	 35.16	0	18329..20296	+	655	15923004	-	SAV0014	-	hypothetical protein
15	 31.54	0	20293..20739	+	148	15923005	rplI	SAV0015	-	50S ribosomal protein L9
16	 38.26	+1	20771..22171	+	466	15923006	dnaC	SAV0016	-	replicative DNA helicase
17	 36.60	+1	22449..23732	+	427	15923007	purA	SAV0017	-	adenylosuccinate synthetase
18	 36.44	+1	24929..25636	+	235	15923008	vicR	SAV0018	-	response regulator
19	 34.92	0	25649..27475	+	608	15923009	vicK	SAV0019	-	two-component sensor histidine kinase
20	 35.39	0	27441..28802	+	453	15923010	-	SAV0020	-	hypothetical protein
21	 32.70	0	28803..29591	+	262	15923011	-	SAV0021	-	hypothetical protein
22	 35.96	0	29980..30780	+	266	15923012	-	SAV0022	-	hypothetical protein
23	 38.34	+1	31007..33325	+	772	57634612	-	SAV0023	-	5'-nucleotidase precursor
24	 39.38	+1	33693..34172	+	159	15923014	-	SAV0024	-	hypothetical protein
25	 28.32	-1	34455..35750	+	431	15923015	-	SAV0025	-	hypothetical protein
26	 24.58	-2	36165..36404	+	79	15923016	-	SAV0026	-	hypothetical protein
27	 34.37	0	36436..37110	-	224	15923017	tnp	SAV0027	-	transposase for IS-like element
28	 32.85	0	37201..37407	-	68	15923018	-	SAV0028	-	truncated replication protein for plasmid
29	 32.33	0	37411..38205	-	264	15923019	-	SAV0029	-	truncated replication protein for pUB110 plasmid
30	 30.86	0	38230..38310	-	26	15923020	-	SAV0030	-	hypothetical protein
31	 33.65	0	38429..39691	-	420	15923021	pre	SAV0031	-	plasmid recombination enzyme
32	 46.10	+2	39800..39940	+	46	15923022	-	SAV0032	-	hypothetical protein
33	 37.50	+1	39988..40179	+	63	15923023	-	SAV0033	-	hypothetical protein
34	 40.49	+2	40198..40602	-	134	15923024	bleO	SAV0034	-	bleomycin resistance protein
35	 42.28	+2	40819..41589	-	256	15923025	aadD	SAV0035	-	kanamycin nucleotidyltransferase
36	 34.37	0	41782..42456	-	224	57634613	tnp	SAV0036	-	transposase for IS-like element
37	 30.12	0	42540..42881	+	113	15923028	-	SAV0038	-	HMG-CoA synthase
38	 33.47	0	43678..44421	+	247	15923029	-	SAV0039	-	glycerophosphoryl diester phosphodiesterase-like protein
39	 29.14	-1	44518..44946	+	142	15923030	-	SAV0040	-	hypothetical protein
40	 30.64	0	44992..46998	-	668	15923031	mecA	SAV0041	-	penicillin binding protein 2 prime
41	 28.67	-1	47098..48855	+	585	15923032	mecR1	SAV0042	-	methicillin resistance protein
42	 25.54	-2	48855..49226	+	123	15923033	mecI	SAV0043	-	methicillin resistance regulatory protein
43	 28.91	-1	49713..50843	+	376	15923034	xylR	SAV0044	-	xylose repressor-like protein
44	 30.53	0	50957..51349	-	130	15923035	-	SAV0045	-	hypothetical protein
45	 33.12	0	51353..52291	-	312	15923036	-	SAV0046	-	hypothetical protein
46	 32.30	0	52324..53388	-	354	15923037	-	SAV0047	-	hypothetical protein
47	 24.90	-2	53524..53784	+	86	15923038	-	SAV0048	-	hypothetical protein
48	 32.87	0	53784..54428	+	214	15923039	-	SAV0049	-	hypothetical protein
49	 34.23	0	54767..55435	-	222	15923040	-	SAV0050	-	hypothetical protein
50	 27.59	-1	55788..55961	-	57	15923041	-	SAV0051	-	hypothetical protein
51	 32.51	0	55963..56694	+	243	15923042	ermA	SAV0052	-	rRNA methylase
52	 36.40	+1	56820..57602	-	260	15923043	ant(9)	SAV0053	-	O-nucleotidylltransferase
53	 29.89	0	57753..58130	-	125	15923044	tnpC	SAV0054	-	transposase C
54	 33.86	0	58137..60029	-	630	15923045	tnpB	SAV0055	-	transposase B
55	 32.14	0	60026..61111	-	361	15923046	tnpA	SAV0056	-	transposase A
56	 33.96	0	61230..61547	-	105	15923047	truncated-radC	SAV0057	-	hypothetical protein
57	 35.84	0	61568..62086	-	172	15923048	-	SAV0058	-	hypothetical protein
58	 32.05	0	62092..62403	-	103	15923049	-	SAV0059	-	hypothetical protein
59	 34.76	0	62490..62840	-	116	15923050	-	SAV0060	-	hypothetical protein
60	 35.05	0	63358..64986	-	542	15923051	ccrB	SAV0061	-	cassette chromosome recombinase B
61	 34.81	0	65008..66357	-	449	15923052	ccrA	SAV0062	-	cassette chromosome recombinase A
62	 34.45	0	66591..68384	-	597	15923053	-	SAV0063	-	hypothetical protein
63	 34.68	0	68384..68680	-	98	15923054	-	SAV0064	-	hypothetical protein
64	 25.12	-2	68873..69919	-	348	15923055	-	SAV0065	-	hypothetical protein
65	 32.80	0	70170..70547	-	125	15923056	tnp	SAV0066	-	transposase
66	 30.23	0	70659..71012	-	117	15923057	tnp	SAV0067	-	transposase
67	 30.79	0	70997..71311	-	104	15923058	-	SAV0068	-	transposase
68	 37.26	+1	71822..72406	-	194	15923059	-	SAV0069	-	hypothetical protein
69	 37.36	+1	73470..74165	-	231	15923060	kdpE	SAV0070	-	transcription regulator protein kdpE
70	 36.71	+1	74140..76773	-	877	15923061	kdpD	SAV0071	-	sensor protein KdpD
71	 36.79	+1	77077..78753	+	558	15923062	truncated-kdpA	SAV0072	-	potassium-transporting ATPase subunit A
72	 39.76	+2	78772..80793	+	673	15923063	kdpB(SCCmec)	SAV0073	-	potassium-transporting ATPase B chain-like protein
73	 37.14	+1	80842..81366	+	174	15923064	kdpC(SCCmec)	SAV0074	-	potassium-transporting ATPase C chain-like protein
74	 33.56	0	81911..82780	-	289	15923065	-	SAV0075	-	hypothetical protein
75	 36.66	+1	82790..83692	-	300	15923066	-	SAV0076	-	hypothetical protein
76	 40.48	+2	83728..83853	+	41	15923067	-	SAV0077	-	hypothetical protein
77	 27.29	-1	83886..84365	-	159	15923068	-	SAV0078	-	hypothetical protein
78	 28.83	-1	84428..84760	-	110	15923069	-	SAV0079	-	hypothetical protein
79	 29.67	-1	84805..85431	-	208	15923070	-	SAV0080	-	hypothetical protein
80	 31.21	0	85546..87054	+	502	15923071	-	SAV0081	-	hypothetical protein
81	 25.66	-2	87653..89386	+	577	15923072	-	SAV0082	-	hypothetical protein
82	 37.46	+1	89570..89908	-	112	15923073	-	SAV0083	-	hypothetical protein
83	 31.48	0	90330..91085	-	251	15923074	-	SAV0084	-	hypothetical protein
84	 30.65	0	91085..91345	-	86	15923075	-	SAV0085	-	hypothetical protein
85	 31.64	0	91482..92546	+	354	15923076	-	SAV0086	-	hypothetical protein
86	 33.48	0	92577..93911	+	444	15923077	-	SAV0087	-	hypothetical protein
87	 32.66	0	93930..95123	+	397	15923078	-	SAV0088	-	sulfide-quinone reductase
88	 38.91	+1	95790..96776	-	328	15923079	-	SAV0089	-	hypothetical protein
89	 26.96	-1	97085..97288	+	67	15923080	-	SAV0090	-	hypothetical protein
90	 30.30	0	97337..97633	+	98	15923081	-	SAV0091	-	hypothetical protein
91	 31.05	0	97832..98443	+	203	15923082	-	SAV0092	-	hypothetical protein
92	 31.24	0	98710..101862	+	1050	15923083	-	SAV0093	-	hypothetical protein
93	 31.88	0	101919..102401	+	160	15923084	-	SAV0094	-	hypothetical protein
94	 33.74	0	102607..103593	+	328	15923085	plc	SAV0095	-	1-phosphatidylinositol phosphodiesterase precurosr
95	 30.09	0	103814..104584	+	256	15923086	-	SAV0096	-	hypothetical protein
96	 29.31	-1	104636..105406	+	256	15923087	-	SAV0097	-	hypothetical protein
97	 29.95	0	105474..106241	+	255	15923088	-	SAV0098	-	hypothetical protein
98	 29.05	-1	106306..107076	+	256	15923089	-	SAV0099	-	hypothetical protein
99	 30.86	0	107143..107910	+	255	15923090	-	SAV0100	-	hypothetical protein
100	 33.69	0	108007..110244	+	745	15923091	-	SAV0101	-	hypothetical protein
33.03	MEAN

3.33	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.