IslandPath Analysis: Chloroherpeton thalassium ATCC 35110



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 45.32   STD DEV: 4.79
Chloroherpeton thalassium ATCC 35110, complete genome - 1..3293456
2710 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 45.34	0	1..1491	+	496	193213721	-	Ctha_0001	-	chromosomal replication initiator protein DnaA
2	 47.29	0	1606..1956	-	116	193213722	-	Ctha_0002	-	hypothetical protein
3	 50.73	+1	1998..3026	-	342	193213723	-	Ctha_0003	-	Holliday junction DNA helicase RuvB
4	 53.09	+1	3142..3303	-	53	193213724	-	Ctha_0004	-	hypothetical protein
5	 38.69	-1	3386..4132	-	248	193213725	-	Ctha_0005	-	hypothetical protein
6	 50.71	+1	4575..7100	+	841	193213726	-	Ctha_0006	-	DNA gyrase, A subunit
7	 53.25	+1	7173..10736	-	1187	193213727	-	Ctha_0007	-	chromosome segregation protein SMC
8	 44.82	0	11114..13699	-	861	193213728	-	Ctha_0008	-	glycoside hydrolase family 2 sugar binding
9	 44.10	0	13989..14675	+	228	193213729	-	Ctha_0009	-	Isoprenylcysteine carboxyl methyltransferase
10	 44.57	0	14775..15797	+	340	193213730	-	Ctha_0010	-	Abortive infection protein
11	 48.42	0	15831..16115	+	94	193213731	-	Ctha_0011	-	hypothetical protein
12	 44.00	0	16112..16927	+	271	193213732	-	Ctha_0012	-	phosphatidate cytidylyltransferase
13	 38.43	-1	17017..17526	+	169	193213733	-	Ctha_0013	-	putative PTS IIA-like nitrogen-regulatory protein PtsN
14	 48.83	0	17545..18828	+	427	193213734	-	Ctha_0014	-	histidyl-tRNA synthetase
15	 49.06	0	18896..19690	-	264	193213735	-	Ctha_0015	-	OmpA/MotB domain protein
16	 47.59	0	20293..22614	+	773	193213736	-	Ctha_0016	-	ABC transporter-related protein
17	 49.96	0	22702..23976	+	424	193213737	-	Ctha_0017	-	HlyD family secretion protein
18	 46.39	0	23979..25403	+	474	193213738	-	Ctha_0018	-	outer membrane efflux protein
19	 44.54	0	25462..27825	-	787	193213739	-	Ctha_0019	-	multi-sensor hybrid histidine kinase
20	 40.63	0	28069..28479	-	136	193213740	-	Ctha_0020	-	response regulator receiver protein
21	 44.46	0	28503..32501	-	1332	193213741	-	Ctha_0021	-	multi-sensor signal transduction histidine kinase
22	 45.15	0	32745..33167	+	140	193213742	-	Ctha_0022	-	hypothetical protein
23	 45.63	0	33271..34368	+	365	193213743	-	Ctha_0023	-	KWG Leptospira repeat protein
24	 53.86	+1	34501..35304	+	267	193213744	-	Ctha_0024	-	phosphoesterase PA-phosphatase related
25	 49.81	0	35323..36621	-	432	193213745	-	Ctha_0025	-	glutamate-1-semialdehyde-2,1-aminomutase
26	 38.26	-1	36650..36913	+	87	193213746	-	Ctha_0026	-	hypothetical protein
27	 43.86	0	37080..38798	+	572	193213747	-	Ctha_0027	-	diguanylate cyclase and serine/threonine protein kinase with TPR repeats
28	 45.66	0	39153..39866	+	237	193213748	-	Ctha_0028	-	protein of unknown function DUF205
29	 49.95	0	40082..41068	+	328	193213749	-	Ctha_0029	-	Glycerol-3-phosphate dehydrogenase (NAD(P)(+))
30	 46.24	0	41348..42292	+	314	193213750	-	Ctha_0030	-	hypothetical protein
31	 43.98	0	42575..44311	+	578	193213751	-	Ctha_0031	-	DNA polymerase III, epsilon subunit
32	 47.72	0	44426..45169	+	247	193213752	-	Ctha_0032	-	Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase
33	 49.12	0	45156..46010	+	284	193213753	-	Ctha_0033	-	pantoate/beta-alanine ligase
34	 51.27	+1	46157..46942	+	261	193213754	-	Ctha_0034	-	class II aldolase/adducin family protein
35	 45.49	0	47180..47467	+	95	193213755	-	Ctha_0035	-	glutamyl-tRNA(Gln) amidotransferase, C subunit
36	 45.24	0	47492..47785	+	97	193213756	-	Ctha_0036	-	protein of unknown function DUF167
37	 47.37	0	47804..47917	+	37	193213757	-	Ctha_0037	-	hypothetical protein
38	 46.69	0	48062..50674	-	870	193213758	-	Ctha_0038	-	hypothetical protein
39	 47.67	0	50897..51775	-	292	193213759	-	Ctha_0039	-	integrase domain protein SAM domain protein
40	 45.23	0	51926..52480	-	184	193213760	-	Ctha_0040	-	alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen
41	 47.03	0	52875..54086	+	403	193213761	-	Ctha_0041	-	phosphoserine phosphatase SerB
42	 46.94	0	54191..56380	-	729	193213762	-	Ctha_0042	-	glutamine synthetase catalytic region
43	 44.32	0	56451..56969	-	172	193213763	-	Ctha_0043	-	transcriptional regulator, AsnC family
44	 49.64	0	57360..57635	+	91	193213764	-	Ctha_0044	-	hypothetical protein
45	 47.04	0	57817..58239	+	140	193213765	-	Ctha_0045	-	hypothetical protein
46	 41.77	0	58353..59312	+	319	193213766	-	Ctha_0046	-	hypothetical protein
47	 49.06	0	59645..61552	+	635	193213767	-	Ctha_0048	-	TonB-dependent receptor
48	 48.69	0	61814..62803	+	329	193213768	-	Ctha_0049	-	UDP-glucose 4-epimerase
49	 44.83	0	62838..63272	+	144	193213769	-	Ctha_0050	-	hypothetical protein
50	 48.15	0	63367..64311	+	314	193213770	-	Ctha_0051	-	cysteine synthase
51	 44.26	0	64419..64784	+	121	193213771	-	Ctha_0052	-	hypothetical protein
52	 46.15	0	64781..65209	+	142	193213772	-	Ctha_0053	-	Mov34/MPN/PAD-1 family protein
53	 44.57	0	65426..65959	+	177	193213773	-	Ctha_0054	-	Dinitrogenase iron-molybdenum cofactor biosynthesis protein
54	 47.39	0	66017..67090	-	357	193213774	-	Ctha_0055	-	recA protein
55	 41.63	0	67181..67783	-	200	193213775	-	Ctha_0056	-	alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen
56	 48.15	0	67805..68830	-	341	193213776	-	Ctha_0057	-	NAD-dependent epimerase/dehydratase
57	 42.75	0	68830..69339	-	169	193213777	-	Ctha_0058	-	biotin/lipoyl attachment domain-containing protein
58	 41.71	0	69520..70080	-	186	193213778	-	Ctha_0059	-	co-chaperone Hsc20
59	 46.90	0	70222..71511	+	429	193213779	-	Ctha_0060	-	processing peptidase
60	 45.57	0	71657..72571	+	304	193213780	-	Ctha_0061	-	heat shock protein DnaJ domain protein
61	 47.64	0	72680..73231	-	183	193213781	-	Ctha_0062	-	NADH-quinone oxidoreductase, chain I
62	 52.09	+1	73622..76954	+	1110	193213782	-	Ctha_0063	-	transcription-repair coupling factor
63	 47.53	0	77102..77566	-	154	193213783	-	Ctha_0064	-	iojap-like protein
64	 49.37	0	77691..78401	-	236	193213784	-	Ctha_0065	-	peptidase M22 glycoprotease
65	 48.87	0	78436..78879	-	147	193213785	-	Ctha_0066	-	protein of unknown function UPF0079
66	 45.07	0	78966..79553	-	195	193213786	-	Ctha_0067	-	hypothetical protein
67	 46.62	0	79601..81391	+	596	193213787	-	Ctha_0068	-	N-acetylmuramoyl-L-alanine amidase
68	 45.24	0	81609..83069	+	486	193213788	-	Ctha_0069	-	hypothetical protein
69	 42.09	0	83073..84065	+	330	193213789	-	Ctha_0070	-	hypothetical protein
70	 46.73	0	84283..85170	-	295	193213790	-	Ctha_0071	-	Radical SAM domain protein
71	 48.89	0	85311..85805	-	164	193213791	-	Ctha_0072	-	PEBP family protein
72	 47.27	0	85809..86375	-	188	193213792	-	Ctha_0073	-	nitroreductase
73	 46.28	0	86372..86989	-	205	193213793	-	Ctha_0074	-	hypothetical protein
74	 46.24	0	87128..87778	-	216	193213794	-	Ctha_0075	-	Haloacid dehalogenase domain protein hydrolase
75	 40.19	-1	87858..88178	-	106	193213795	-	Ctha_0076	-	KaiB domain protein
76	 45.51	0	88197..89921	-	574	193213796	-	Ctha_0077	-	putative circadian clock protein, KaiC
77	 51.32	+1	90190..92736	-	848	193213797	-	Ctha_0078	-	hypothetical protein
78	 47.58	0	92843..93586	-	247	193213798	-	Ctha_0079	-	protein of unknown function DUF558
79	 43.19	0	93761..94318	+	185	193213799	-	Ctha_0080	-	hypothetical protein
80	 47.79	0	94370..94867	-	165	193213800	-	Ctha_0081	-	GCN5-related N-acetyltransferase
81	 44.70	0	95051..95569	-	172	193213801	-	Ctha_0082	-	hypothetical protein
82	 45.90	0	95932..97467	+	511	193213802	-	Ctha_0083	-	hypothetical protein
83	 47.29	0	97541..98815	-	424	193213803	-	Ctha_0084	-	protein of unknown function DUF214
84	 40.11	-1	98926..99663	-	245	193213804	-	Ctha_0085	-	hypothetical protein
85	 42.29	0	99794..100519	-	241	193213805	-	Ctha_0086	-	hypothetical protein
86	 45.42	0	101066..101950	+	294	193213806	-	Ctha_0087	-	protein-(glutamine-N5) methyltransferase, release factor-specific
87	 45.78	0	101963..103159	+	398	193213807	-	Ctha_0088	-	3-hydroxyacyl-CoA dehydrogenase NAD-binding
88	 47.80	0	103266..103970	-	234	193213808	-	Ctha_0089	-	Abortive infection protein
89	 56.98	+2	104224..106278	-	684	193213809	-	Ctha_0090	-	DNA ligase, NAD-dependent
90	 42.97	0	106438..108648	+	736	193213810	-	Ctha_0091	-	ComEC/Rec2-related protein
91	 48.74	0	108664..108981	+	105	193213811	-	Ctha_0092	-	HesB/YadR/YfhF-family protein
92	 48.40	0	109059..110060	-	333	193213812	-	Ctha_0093	-	KpsF/GutQ family protein
93	 52.93	+1	110220..112862	-	880	193213813	-	Ctha_0094	-	DNA mismatch repair protein MutS
94	 45.29	0	112996..113430	+	144	193213814	-	Ctha_0095	-	hypothetical protein
95	 45.12	0	113535..113831	+	98	193213815	-	Ctha_0096	-	ribosomal protein L21
96	 48.24	0	113867..114121	+	84	193213816	-	Ctha_0097	-	ribosomal protein L27
97	 46.30	0	114424..115356	+	310	193213817	-	Ctha_0098	-	malate dehydrogenase, NAD-dependent
98	 43.50	0	115474..117411	-	645	193213818	-	Ctha_0099	-	peptidase M61 domain protein
99	 49.21	0	117509..118264	+	251	193213819	-	Ctha_0100	-	imidazoleglycerol phosphate synthase, cyclase subunit
100	 45.88	0	118548..119687	+	379	193213820	-	Ctha_0101	-	hypothetical protein
45.32	MEAN

4.79	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.