IslandPath Analysis: Burkholderia xenovorans LB400



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 62.84   STD DEV: 4.09
Burkholderia xenovorans LB400 chromosome 2, complete genome - 1..3363523
2960 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 58.07	-1	446..1108	+	220	91777111	-	Bxe_B3028	-	putative partition protein ParA
2	 58.92	0	1134..2192	+	352	91777112	-	Bxe_B3027	-	ParB family protein
3	 61.32	0	2251..3633	-	460	91777113	-	Bxe_B3026	-	putative replication protein
4	 60.71	0	5826..6899	+	357	91777114	-	Bxe_B3025	-	hypothetical protein
5	 62.88	0	6971..8053	-	360	91777115	-	Bxe_B3024	-	putative phage integrase
6	 64.39	0	8112..8507	-	131	91777116	-	Bxe_B3023	-	hypothetical protein
7	 66.51	0	8613..9239	-	208	91777117	-	Bxe_B3022	-	XRE family transcriptional regulator
8	 63.33	0	9401..10600	+	399	91777118	-	Bxe_B3021	-	2-amino-3-ketobutyrate coenzyme A ligase
9	 60.27	0	10614..11645	+	343	91777119	tdh	Bxe_B3020	-	L-threonine 3-dehydrogenase
10	 60.52	0	11713..12363	-	216	91777120	-	Bxe_B3019	-	putative YceI like family protein
11	 64.71	0	12472..13137	+	221	91777121	-	Bxe_B3018	-	TetR family transcriptional regulator
12	 61.46	0	13151..13630	+	159	91777122	-	Bxe_B3017	-	hypothetical protein
13	 60.31	0	13842..14360	+	172	91777123	-	Bxe_B3016	-	hypothetical protein
14	 61.11	0	14890..15411	+	173	91777124	-	Bxe_B3015	-	MarR family transcriptional regulator
15	 63.24	0	15437..15844	+	135	91777125	-	Bxe_B3014	-	hypothetical protein
16	 66.09	0	15841..16536	+	231	91777126	-	Bxe_B3013	-	DNA-7-methylguanine glycosylase
17	 61.77	0	16579..18354	-	591	91777127	-	Bxe_B3012	-	hypothetical protein
18	 61.98	0	18633..21023	+	796	91777128	-	Bxe_B3011	-	CheA signal transduction histidine kinases (STHK)
19	 64.08	0	21069..21803	+	244	91777129	-	Bxe_B3010	-	methyl-accepting chemotaxis sensory transducer
20	 60.04	0	21800..22342	+	180	91777130	-	Bxe_B3009	-	hypothetical protein
21	 60.39	0	22380..23351	+	323	91777131	-	Bxe_B3008	-	hypothetical protein
22	 60.66	0	23372..23737	+	121	91777132	-	Bxe_B3007	-	response regulator receiver protein
23	 64.52	0	24457..25203	+	248	91777133	-	Bxe_B3006	-	two component transcriptional regulator
24	 64.95	0	25282..26040	-	252	91777134	-	Bxe_B3005	-	short chain dehydrogenase
25	 66.15	0	26152..27111	-	319	91777135	-	Bxe_B3004	-	transcriptional regulator
26	 60.56	0	27351..27989	+	212	91777136	-	Bxe_B3003	-	metal dependent phosphohydrolase
27	 59.92	0	28352..29077	-	241	91777137	-	Bxe_B3002	-	GntR family transcriptional regulator
28	 63.72	0	29238..30458	+	406	91777138	-	Bxe_B3001	-	Serine--glyoxylate transaminase
29	 65.58	0	30792..31709	-	305	91777139	-	Bxe_B2999	-	LysR family transcriptional regulator
30	 66.89	0	31885..33213	+	442	91777140	-	Bxe_B2998	-	major facilitator superfamily metabolite/H(+) symporter
31	 64.21	0	33255..34514	+	419	91777141	-	Bxe_B2997	-	Alpha-methylacyl-CoA racemase
32	 66.04	0	34511..35311	+	266	91777142	-	Bxe_B2996	-	methylmalonyl-CoA decarboxylase
33	 63.46	0	35915..36631	+	238	91777143	-	Bxe_B2995	-	glycine betaine/choline/proline ABC transporter inner membrane protein
34	 61.43	0	36628..37524	+	298	91777144	-	Bxe_B2994	-	glycine betaine/choline/proline ABC transporter periplasmic ligand-binding protein
35	 62.08	0	37540..38193	+	217	91777145	-	Bxe_B2993	-	ABC glycine betaine/L-proline transporter, inner membrane subunit
36	 62.93	0	38190..39392	+	400	91777146	-	Bxe_B2992	-	ABC glycine betaine/L-proline transporter, ATPase subunit
37	 62.02	0	39594..39851	+	85	91777147	-	Bxe_B2991	-	hypothetical protein
38	 66.33	0	40072..40671	+	199	91777148	-	Bxe_B2990	-	amino acid efflux pump, RhtB family protein
39	 65.47	0	40692..41942	-	416	91777149	-	Bxe_B2989	-	hypothetical protein
40	 71.13	+2	42064..42354	-	96	91777150	-	Bxe_B2988	-	hypothetical protein
41	 65.74	0	42540..44270	-	576	91777151	-	Bxe_B2987	-	cyclic nucleotide-regulated FAD-dependent pyridine nucleotide-disulphide oxidoreductase
42	 65.26	0	44361..45353	-	330	91777152	-	Bxe_B2986	-	putative DedA protein
43	 60.89	0	45682..45906	-	74	91777153	-	Bxe_B2985	-	hypothetical protein
44	 67.43	+1	46544..48241	-	565	91777154	-	Bxe_B2984	-	methyl-accepting chemotaxis sensory transducer, Pas/Pac sensor
45	 65.35	0	48549..52052	+	1167	91777155	-	Bxe_B2983	-	periplasmic sensor hybrid histidine kinase
46	 67.46	+1	52075..52452	-	125	91777156	-	Bxe_B2982	-	putative translation initiation inhibitor
47	 63.03	0	52853..54253	-	466	91777157	-	Bxe_B2980	-	hypothetical protein
48	 65.65	0	54569..56044	+	491	91777158	-	Bxe_B2979	-	sigma-54 dependent trancsriptional regulator
49	 65.55	0	56098..56544	+	148	91777159	-	Bxe_B2978	-	hypothetical protein
50	 57.09	-1	56883..57143	-	86	91777160	-	Bxe_B2977	-	hypothetical protein
51	 64.75	0	57357..58556	+	399	91777161	-	Bxe_B2976	-	putative beta-lactamase class C and other penicillin binding proteins
52	 60.14	0	58693..58983	+	96	91777162	-	Bxe_B2975	-	putative H-NS-like transcription regulator
53	 63.73	0	59158..59565	+	135	91777163	-	Bxe_B2974	-	hypothetical protein
54	 48.03	-2	59712..59990	+	92	91777164	-	Bxe_B2973	-	hypothetical protein
55	 62.21	0	60092..60652	+	186	91777165	-	Bxe_B2972	-	putative fimbrial subunit
56	 60.35	0	60728..61471	+	247	91777166	-	Bxe_B2971	-	putative fimbrial chaperone protein
57	 62.85	0	61604..64246	+	880	91777167	-	Bxe_B2970	-	putative fimbrial biogenesis outer membrane usher protein
58	 58.80	0	64382..65398	+	338	91777168	-	Bxe_B2969	-	putative fimbrial protein
59	 62.73	0	65686..67287	+	533	91777169	prfC	Bxe_B2968	-	peptide chain release factor 3
60	 69.18	+1	67616..70045	+	809	91777170	-	Bxe_B2967	-	GNAT family acetyltransferase
61	 60.99	0	70176..70721	-	181	91777171	-	Bxe_B2966	-	hypothetical protein
62	 63.86	0	70853..71671	-	272	91777172	-	Bxe_B2965	-	IclR family transcriptional regulator
63	 63.90	0	71907..72956	+	349	91777173	-	Bxe_B2964	-	ABC sugar transporter, periplasmic ligand binding protein
64	 65.88	0	72953..74473	+	506	91777174	-	Bxe_B2963	-	ABC sugar transporter, ATPase subunit
65	 66.48	0	74463..75512	+	349	91777175	-	Bxe_B2962	-	ABC sugar transporter, inner membrane subunit
66	 63.69	0	75538..75873	+	111	91777176	-	Bxe_B2961	-	putative hydrolase
67	 64.67	0	75884..77236	+	450	91777177	-	Bxe_B2960	-	Altronate dehydratase
68	 66.95	+1	77360..78400	+	346	91777178	-	Bxe_B2959	-	putative aldo/keto reductase family protein
69	 64.98	0	78408..79238	+	276	91777179	-	Bxe_B2958	-	hypothetical protein
70	 65.46	0	79284..80027	+	247	91777180	-	Bxe_B2957	-	putative short-chain dehydrogenase/reductase
71	 61.25	0	80084..80932	+	282	91777181	-	Bxe_B2956	-	fumarylacetoacetate hydrolase family protein
72	 68.07	+1	81095..82447	-	450	91777182	-	Bxe_B2955	-	putative pyridoxal-dependent decarboxylase
73	 63.04	0	82511..82813	-	100	91777183	-	Bxe_B2954	-	ArsR family transcriptional regulator
74	 62.76	0	82931..83365	-	144	91777184	-	Bxe_B2953	-	phenylacetic acid degradation-related protein
75	 64.08	0	83635..85257	+	540	91777185	-	Bxe_B2952	-	methyl-accepting chemotaxis sensory transducer
76	 51.71	-2	85371..85604	-	77	91777186	-	Bxe_B2951	-	cold-shock DNA-binding protein family protein
77	 56.16	-1	85793..86068	+	91	91777187	-	Bxe_B2950	-	hypothetical protein
78	 65.32	0	86135..87244	-	369	91777188	-	Bxe_B2949	-	putative isomerase
79	 65.36	0	87519..88205	+	228	91777189	-	Bxe_B2948	-	MgtC/SapB family transporter
80	 67.11	+1	88338..89693	+	451	91777190	-	Bxe_B2947	-	hypothetical protein
81	 57.23	-1	90021..90179	+	52	91777191	-	Bxe_B2946	-	hypothetical protein
82	 63.00	0	90619..90918	+	99	91777192	-	Bxe_B2945	-	hypothetical protein
83	 64.99	0	91074..92027	+	317	91777193	-	Bxe_B2944	-	3-hydroxyacyl-CoA dehydrogenase
84	 62.21	0	92146..92796	+	216	91777194	-	Bxe_B2943	-	hypothetical protein
85	 59.08	0	92978..93412	+	144	91777195	-	Bxe_B2942	-	hypothetical protein
86	 65.04	0	93512..94990	-	492	91777196	-	Bxe_B2941	-	polyhydroxyalkanoate depolymerase
87	 59.02	0	95210..95863	+	217	91777197	-	Bxe_B2940	-	glutathione S-transferase
88	 64.88	0	95986..98004	-	672	91777198	-	Bxe_B2939	-	methyl-accepting chemotaxis sensory transducer
89	 69.68	+1	98123..100510	-	795	91777199	-	Bxe_B2938	-	copper-translocating P-type ATPase
90	 65.48	0	100613..101284	-	223	91777200	-	Bxe_B2937	-	negative transcriptional regulator
91	 68.24	+1	101605..103002	+	465	91777201	-	Bxe_B2936	-	putative lipoprotein
92	 63.40	0	103117..106968	+	1283	91777202	-	Bxe_B2935	-	hypothetical protein
93	 65.11	0	106980..108521	-	513	91777203	-	Bxe_B2934	-	GntR family transcriptional regulator
94	 61.29	0	108660..109757	+	365	91777204	-	Bxe_B2933	-	spermidine/putrescine ABC transporter ATPase
95	 61.24	0	109867..110916	+	349	91777205	-	Bxe_B2932	-	spermidine/putrescine ABC transporter periplasmic ligand-binding protein
96	 62.02	0	110992..112260	+	422	91777206	-	Bxe_B2931	-	spermidine/putrescine ABC transporter inner membrane protein
97	 61.19	0	112275..113114	+	279	91777207	-	Bxe_B2930	-	spermidine/putrescine ABC transporter inner membrane protein
98	 63.15	0	113271..114350	+	359	91777208	-	Bxe_B2929	-	OmpA/MotB family outer membrane protein
99	 58.72	-1	114545..115186	+	213	91777209	-	Bxe_B2928	-	two component LuxR family transcriptional regulator
100	 66.67	0	115183..115569	+	128	91777210	-	Bxe_B2927	-	Hpt domain-containing protein
62.84	MEAN

4.09	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.