IslandPath Analysis: Ehrlichia chaffeensis str. Arkansas



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 30.45   STD DEV: 3.81
Ehrlichia chaffeensis str. Arkansas, complete genome - 1..1176248
1105 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 28.72	0	2..847	+	281	88657847	-	ECH_0001	-	ParB family chromosome partitioning protein
2	 29.17	0	1005..1532	+	175	88658505	rimM	ECH_0002	-	16S rRNA processing protein RimM
3	 34.32	+1	1516..2223	+	235	88658005	trmD	ECH_0003	-	tRNA (guanine-N1)-methyltransferase
4	 32.28	0	2216..2593	+	125	88658630	rplS	ECH_0004	-	50S ribosomal protein L19
5	 31.07	0	2852..3337	-	161	88658230	-	ECH_0005	-	competence/damage inducible protein CinA
6	 31.97	0	3683..5584	+	633	88657649	thrS	ECH_0006	-	threonyl-tRNA synthetase
7	 28.74	0	5609..6130	+	173	88658160	infC	ECH_0007	-	translation initiation factor IF-3
8	 29.06	0	6417..6884	-	155	88658287	-	ECH_0008	-	P-loop hydrolase family protein
9	 34.33	+1	6904..7605	-	233	88657820	-	ECH_0009	-	hypothetical protein
10	 33.24	0	7674..8693	-	339	88657571	-	ECH_0010	-	hypothetical protein
11	 29.76	0	8881..9888	+	335	88657991	gap	ECH_0011	-	glyceraldehyde-3-phosphate dehydrogenase, type I
12	 31.38	0	10164..10829	-	221	88658510	-	ECH_0012	-	isoprenoid biosynthesis protein
13	 30.25	0	10949..11758	+	269	88657880	-	ECH_0013	-	putative pyrroline-5-carboxylate reductase
14	 29.05	0	11920..13437	+	505	88657800	dnaX	ECH_0014	-	DNA polymerase III, subunits gamma and tau
15	 30.07	0	13441..13746	+	101	88658046	-	ECH_0015	-	hypothetical protein
16	 33.33	0	13757..14767	+	336	88657690	asd	ECH_0016	-	aspartate-semialdehyde dehydrogenase
17	 29.27	0	14907..15029	-	40	88657952	-	ECH_0017	-	hypothetical protein
18	 32.32	0	15092..16270	-	392	88658447	metK	ECH_0018	-	S-adenosylmethionine synthetase
19	 28.39	0	16706..17878	+	390	88657937	-	ECH_0020	-	UbiH/UbiF/VisC/COQ6 family ubiquinone biosynthesis hydroxylase
20	 26.13	-1	17875..18429	-	184	88658411	-	ECH_0021	-	hypothetical protein
21	 32.86	0	18789..19631	+	280	88658353	glyQ	ECH_0023	-	glycyl-tRNA synthetase subunit alpha
22	 26.85	0	19647..21758	+	703	88657718	glyS	ECH_0024	-	glycyl-tRNA synthetase, beta subunit
23	 33.16	0	21822..22964	+	380	88657578	dnaJ	ECH_0025	-	chaperone protein DnaJ
24	 28.69	0	23010..23849	-	279	88658330	nadC	ECH_0026	-	nicotinate-nucleotide pyrophosphorylase
25	 30.95	0	23943..24530	+	195	88658210	-	ECH_0027	-	putative glycerol-3 phosphate acyltransferase PlsY
26	 32.91	0	24538..25008	-	156	88658422	ruvC	ECH_0028	-	crossover junction endodeoxyribonuclease RuvC
27	 34.18	0	25010..25834	-	274	88657938	-	ECH_0029	-	cytochrome c oxidase, subunit III
28	 38.41	+2	25934..26938	-	334	88657828	hemE	ECH_0030	-	uroporphyrinogen decarboxylase
29	 31.31	0	27362..28249	+	295	88658322	tlyC	ECH_0031	-	hemolysin
30	 30.15	0	28232..28765	-	177	88657926	-	ECH_0032	-	HK97 family phage prohead protease
31	 32.23	0	28890..30071	-	393	88658099	-	ECH_0033	-	HK97 family phage portal protein
32	 28.12	0	30192..30287	+	31	88657644	-	ECH_0034	-	hypothetical protein
33	 27.87	0	30385..31134	+	249	88658129	-	ECH_0035	-	putative biotin synthesis protein BioC
34	 31.85	0	31156..32100	+	314	88657840	nadA	ECH_0036	-	quinolinate synthetase
35	 33.33	0	32814..33191	-	125	88658543	fdxA	ECH_0038	-	ferredoxin A
36	 34.24	0	33455..35101	+	548	88658043	-	ECH_0039	-	120 kDa immunodominant surface protein
37	 32.96	0	36100..38244	-	714	88657566	virD4	ECH_0040	-	type IV secretion system protein VirD4
38	 34.23	0	38281..39279	-	332	88658241	virB11	ECH_0041	-	type IV secretion system protein VirB11
39	 33.41	0	39295..40638	-	447	88658039	virB10	ECH_0042	-	type IV secretion system protein VirB10
40	 28.22	0	40660..41481	-	273	88658647	virB9-1	ECH_0043	-	type IV secretion system protein VirB9
41	 30.67	0	41465..42178	-	237	88657917	virB8-1	ECH_0044	-	type IV secretion system protein VirB8
42	 30.24	0	42310..43407	-	365	88657727	-	ECH_0045	-	putative GTP cyclohydrolase II
43	 22.92	-1	43622..43765	+	47	88657997	-	ECH_0047	-	hypothetical protein
44	 27.26	0	43952..45022	-	356	88658481	-	ECH_0048	-	TPR domain-containing protein
45	 25.77	-1	45097..45519	-	140	88657849	-	ECH_0049	-	hypothetical protein
46	 34.08	0	45664..46467	-	267	88658257	dapF	ECH_0050	-	diaminopimelate epimerase
47	 25.00	-1	46685..46840	+	51	88658485	-	ECH_0051	-	hypothetical protein
48	 23.88	-1	46729..47151	-	140	88658254	-	ECH_0052	-	hypothetical protein
49	 26.13	-1	47420..47530	+	36	88657780	-	ECH_0053	-	hypothetical protein
50	 17.89	-2	47577..47699	+	40	88658071	-	ECH_0054	-	hypothetical protein
51	 31.16	0	47910..49061	+	383	88658248	pgk	ECH_0055	-	phosphoglycerate kinase
52	 30.93	0	49530..50696	-	388	88657931	-	ECH_0056	-	putative exodeoxyribonuclease VII, large subunit
53	 28.83	0	50693..51358	-	221	88657804	-	ECH_0057	-	zinc finger-like domain-containing protein
54	 35.48	+1	51551..52390	+	279	88657848	dapD	ECH_0058	-	2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransferase
55	 24.00	-1	52627..52776	+	49	88658476	-	ECH_0059	-	hypothetical protein
56	 31.67	0	52852..54171	+	439	88658612	trmE	ECH_0060	-	tRNA modification GTPase TrmE
57	 32.97	0	54360..54902	-	180	88658181	-	ECH_0061	-	phosphopantothenoylcysteine decarboxylase
58	 31.67	0	55011..57050	+	679	88658514	recG	ECH_0062	-	ATP-dependent DNA helicase RecG
59	 30.74	0	57435..58397	+	320	88658323	-	ECH_0063	-	putative NADH-ubiquinone oxidoreductase,-like protein
60	 30.07	0	59130..59588	-	152	88658565	dksA	ECH_0064	-	DnaK suppressor protein
61	 28.96	0	59701..60363	+	220	88657935	-	ECH_0065	-	putative heme exporter protein CcmB
62	 31.38	0	60648..61568	+	306	88658657	-	ECH_0067	-	cation diffusion facilitator transporter family protein
63	 28.83	0	61470..61691	-	73	88658227	-	ECH_0068	-	hypothetical protein
64	 27.14	0	61872..62501	+	209	88658044	-	ECH_0069	-	hypothetical protein
65	 26.02	-1	62532..62654	+	40	88657726	-	ECH_0070	-	hypothetical protein
66	 35.07	+1	62982..63269	-	95	88658183	rpsT	ECH_0071	-	30S ribosomal protein S20
67	 31.08	0	63477..64187	-	236	88658635	-	ECH_0072	-	1-acyl-sn-glycerol-3-phosphate acyltransferase family protein
68	 30.69	0	65137..65703	+	188	88658603	def	ECH_0073	-	peptide deformylase
69	 33.72	0	65718..66503	+	261	88657868	-	ECH_0074	-	uracil-DNA glycosylase
70	 21.43	-2	66855..66980	+	41	88657919	-	ECH_0075	-	hypothetical protein
71	 28.60	0	67044..68162	-	372	88658291	recF	ECH_0076	-	recombination protein F
72	 30.70	0	68695..69606	-	303	88658104	argF	ECH_0077	-	ornithine carbamoyltransferase
73	 27.49	0	69599..69769	-	56	88658418	-	ECH_0078	-	hypothetical protein
74	 32.59	0	69937..70341	-	134	88658619	-	ECH_0079	-	hypothetical protein
75	 30.34	0	70668..73502	+	944	88658019	polA	ECH_0080	-	DNA polymerase I
76	 24.73	-1	73739..73831	+	30	88657626	-	ECH_0081	-	hypothetical protein
77	 32.02	0	74019..74705	+	228	88658377	rpe	ECH_0082	-	ribulose-phosphate 3-epimerase
78	 24.76	-1	74724..74828	+	34	88657621	-	ECH_0083	-	hypothetical protein
79	 32.97	0	75298..76125	+	275	88658302	-	ECH_0084	-	hypothetical protein
80	 30.68	0	76137..76853	+	238	88658167	-	ECH_0085	-	ABC transporter, ATP-binding protein
81	 28.85	0	76896..77051	-	51	88658237	-	ECH_0086	-	hypothetical protein
82	 33.39	0	76933..78783	+	616	88658224	-	ECH_0087	-	hypothetical protein
83	 30.57	0	78843..79820	-	325	88657619	ispB	ECH_0088	-	octaprenyl-diphosphate synthase
84	 34.39	+1	80016..81428	-	470	88658390	glnA	ECH_0089	-	glutamine synthetase, type I
85	 31.50	0	81723..82979	+	418	88658503	tyrS	ECH_0091	-	tyrosyl-tRNA synthetase
86	 32.59	0	83016..84221	+	401	88658613	hemA	ECH_0092	-	5-aminolevulinate synthase
87	 24.93	-1	84218..84586	-	122	88658038	-	ECH_0093	-	hypothetical protein
88	 22.70	-2	84585..84725	+	46	88658466	-	ECH_0094	-	hypothetical protein
89	 30.73	0	84942..85823	+	293	88658165	secF	ECH_0095	-	preprotein translocase subunit SecF
90	 36.88	+1	86306..87208	-	300	161486751	fba	ECH_0097	-	fructose-bisphosphate aldolase
91	 32.61	0	87593..88843	+	416	88657701	pdhC	ECH_0098	-	branched-chain alpha-keto acid dehydrogenase subunit E2
92	 27.91	0	88913..89041	-	42	88658355	-	ECH_0099	-	hypothetical protein
93	 34.34	+1	89325..89423	+	32	88658652	-	ECH_0100	-	hypothetical protein
94	 33.33	0	89490..89609	+	39	88658267	-	ECH_0101	-	hypothetical protein
95	 30.65	0	89972..90157	+	61	88658032	-	ECH_0102	-	hypothetical protein
96	 30.73	0	90467..90658	+	63	88658385	-	ECH_0103	-	hypothetical protein
97	 35.71	+1	90646..90771	+	41	88658639	-	ECH_0104	-	hypothetical protein
98	 38.17	+2	91064..91249	+	61	88658533	-	ECH_0105	-	hypothetical protein
99	 38.19	+2	91330..93471	+	713	88657757	-	ECH_0106	-	hypothetical protein
100	 29.17	0	94133..94228	-	31	88658515	-	ECH_0107	-	hypothetical protein
30.45	MEAN

3.81	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.