IslandPath Analysis: Symbiobacterium thermophilum IAM 14863



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 68.88   STD DEV: 4.16
Symbiobacterium thermophilum IAM 14863, complete genome - 1..3566135
3338 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 63.11	-1	1..1377	+	458	51891139	dnaA	STH1	-	chromosomal replication initiation protein
2	 64.50	-1	1600..2706	+	368	51891140	-	STH2	-	DNA polymerase III beta subunit
3	 67.98	0	2718..2945	+	75	51891141	-	STH3	-	hypothetical protein
4	 67.82	0	2948..4075	+	375	51891142	recF	STH4	-	DNA repair and genetic recombination protein
5	 68.25	0	4075..4326	+	83	51891143	-	STH5	-	hypothetical protein
6	 64.48	-1	4461..6377	+	638	51891144	gyrB	STH6	-	DNA gyrase B subunit
7	 66.30	0	6411..8852	+	813	51891145	gyrA	STH7	-	DNA gyrase A subunit
8	 70.79	0	9323..10486	+	387	51891146	-	STH8	-	class-V aminotransferase
9	 70.98	0	10621..12243	+	540	51891147	-	STH9	-	D-3-phosphoglycerate dehydrogenase
10	 65.72	0	12383..13648	+	421	51891148	serS	STH10	-	seryl-tRNA synthetase
11	 70.59	0	13929..14387	+	152	51891149	-	STH11	-	putative Cu-binding protein
12	 74.74	+1	14467..16176	+	569	51891150	-	STH12	-	ABC-type dipeptide/oligopeptide/nickel transport systems periplasmic components
13	 71.75	0	16249..17961	+	570	51891151	-	STH13	-	DNA polymerase III gamma and tau subunits
14	 64.24	-1	17961..18290	+	109	51891152	-	STH14	-	hypothetical protein
15	 67.67	0	18297..18893	+	198	51891153	recR	STH15	-	recombination protein
16	 66.60	0	19233..20681	+	482	51891154	gltX	STH16	-	glutamyl-tRNA synthetase
17	 66.32	0	27453..28316	+	287	51891155	-	STH17	-	spermidine synthase
18	 69.39	0	28313..29194	+	293	51891156	-	STH18	-	arginase-family protein
19	 68.63	0	29238..30914	+	558	51891157	argS	STH19	-	arginyl-tRNA synthetase
20	 64.57	-1	31521..32810	+	429	51891158	-	STH20	-	group II intron-encoding maturase
21	 69.21	0	32954..34408	+	484	51891159	-	STH21	-	sulfate transporter family protein
22	 60.81	-1	34519..34740	+	73	51891160	-	STH22	-	cyanate hydratase
23	 66.67	0	34805..35347	+	180	51891161	-	STH23	-	hypothetical protein
24	 64.03	-1	35424..36638	+	404	51891162	-	STH24	-	two-component sensor histidine kinase
25	 65.00	0	36556..36975	+	139	51891163	-	STH25	-	two-component response regulator variant
26	 64.56	-1	36994..37230	+	78	51891164	-	STH26	-	two-component response regulator variant
27	 66.90	0	37306..37734	-	142	51891165	-	STH27	-	hypothetical protein
28	 69.35	0	37868..38389	+	173	51891166	-	STH28	-	RNA polymerase ECF-type sigma factor
29	 69.70	0	38379..39170	+	263	51891167	-	STH29	-	transmembrane protein
30	 73.31	+1	39270..40142	+	290	51891168	-	STH30	-	putative lipoprotein
31	 73.04	0	40213..41529	+	438	51891169	-	STH31	-	sigma-54-dependent transcriptional regulator variant
32	 71.43	0	41714..41860	+	48	51891170	-	STH32	-	hypothetical protein
33	 67.81	0	41942..43162	+	406	51891171	-	STH33	-	multidrug resistance protein variant
34	 71.22	0	43159..44169	+	336	51891172	-	STH34	-	Zn-dependent alcohol dehydrogenase and related dehydrogenase
35	 67.63	0	44210..45556	+	448	51891173	-	STH35	-	lysine 2,3-aminomutase
36	 77.28	+2	45549..46688	+	379	51891174	-	STH36	-	hypothetical protein
37	 69.87	0	46745..48307	+	520	51891175	-	STH37	-	lysine 5,6-aminomutase alpha subunit
38	 68.97	0	48304..49041	+	245	51891176	-	STH38	-	lysine 5,6-aminomutase beta subunit
39	 62.50	-1	49305..49784	+	159	51891177	rpoE	STH39	-	RNA polymerase delta subunit
40	 66.79	0	49916..51541	+	541	51891178	-	STH40	-	CTP synthetase
41	 69.51	0	51693..52958	+	421	51891179	-	STH41	-	hypothetical protein
42	 62.77	-1	53089..53883	+	264	51891180	-	STH42	-	hypothetical protein
43	 62.61	-1	54262..57933	+	1223	51891181	-	STH43	-	putative middle wall protein precursor
44	 57.61	-2	58396..61731	+	1111	51891182	-	STH44	-	putative middle wall protein precursor
45	 60.43	-2	62090..62602	-	170	51891183	-	STH45	-	putative transposase subunit
46	 59.18	-2	62680..62946	-	88	51891184	-	STH46	-	hypothetical protein
47	 54.87	-2	63171..63365	+	64	51891185	-	STH47	-	hypothetical protein
48	 65.55	0	63522..64148	+	208	51891186	-	STH48	-	hypothetical protein
49	 64.67	-1	64229..64729	+	166	51891187	-	STH49	-	hypothetical protein
50	 60.73	-1	64888..65106	+	72	51891188	-	STH50	-	putative transposase subunit
51	 62.76	-1	65303..66427	+	374	51891189	-	STH51	-	transposase subunit
52	 60.99	-1	66431..66712	+	93	51891190	-	STH52	-	putative transposase subunit
53	 60.37	-2	66758..67186	+	142	51891191	-	STH53	-	putative transposase subunit
54	 65.64	0	67313..68284	+	323	51891192	-	STH54	-	putative transposase
55	 64.16	-1	68285..69121	+	278	51891193	-	STH55	-	hypothetical protein
56	 61.59	-1	69136..69411	+	91	51891194	-	STH56	-	hypothetical protein
57	 65.02	0	69911..73786	-	1291	51891195	-	STH57	-	putative middle wall protein precursor
58	 68.52	0	73957..77850	-	1297	51891196	-	STH58	-	putative middle wall protein precursor
59	 66.85	0	78119..78649	+	176	51891197	-	STH59	-	hypothetical protein
60	 70.24	0	78667..80064	+	465	51891198	-	STH60	-	putative carboxy-terminal processing proteinase
61	 72.78	0	80223..81497	+	424	51891199	-	STH61	-	putative S-layer associated protein
62	 72.80	0	81502..84810	+	1102	51891200	-	STH62	-	putative serine protease
63	 72.22	0	84830..85261	+	143	51891201	-	STH63	-	putative acyl-CoA hydrolase
64	 67.99	0	85266..86099	+	277	51891202	-	STH64	-	hypothetical protein
65	 69.60	0	86136..86783	+	215	51891203	-	STH65	-	hypothetical protein
66	 66.51	0	86899..87549	+	216	51891204	-	STH66	-	putative translaldolase
67	 70.27	0	87691..88662	+	323	51891205	glpX	STH67	-	fructose 1,6-bisphosphatase II
68	 75.49	+1	88729..89487	+	252	51891206	-	STH68	-	putative peptidase
69	 70.43	0	89735..92203	-	822	51891207	-	STH69	-	penicillin amidase
70	 75.26	+1	92280..94502	-	740	51891208	-	STH70	-	penicillin amidase
71	 63.33	-1	94714..94923	+	69	51891209	rpmE	STH71	-	ribosomal protein L31
72	 66.44	0	94987..95883	+	298	51891210	-	STH72	-	hypothetical protein
73	 67.41	0	95974..97044	+	356	51891211	-	STH73	-	peptide chain release factor 1
74	 76.69	+1	97051..97968	+	305	51891212	-	STH74	-	putative protoporphyrinogen oxidase
75	 72.48	0	98145..99194	+	349	51891213	-	STH75	-	putative translation factor
76	 70.28	0	99191..99661	+	156	51891214	-	STH76	-	low molecular weight protein-tyrosine-phosphatase
77	 67.57	0	99658..100098	+	146	51891215	-	STH77	-	ribose 5-phosphate isomerase
78	 75.66	+1	100194..100727	+	177	51891216	-	STH78	-	hypothetical protein
79	 67.62	0	100742..101371	+	209	51891217	upp	STH79	-	uracil phosphoribosyltransferase
80	 64.37	-1	101399..101833	+	144	51891218	-	STH80	-	dCMP deaminase
81	 68.62	0	101938..103014	+	358	51891219	-	STH81	-	undecaprenyl-phosphate N-acetylglucosaminyltransferase
82	 69.03	0	103132..104274	+	380	51891220	-	STH82	-	UDP-N-acetylglucosamine 2-epimerase
83	 66.30	0	104440..104709	+	89	51891221	-	STH83	-	hypothetical protein
84	 59.45	-2	104733..105023	+	96	51891222	-	STH84	-	hypothetical protein
85	 64.99	0	105020..105793	+	257	51891223	-	STH85	-	ATP synthase A subunit
86	 63.25	-1	105938..106171	+	77	51891224	-	STH86	-	ATP synthase C subunit
87	 65.64	0	106292..106780	+	162	51891225	-	STH87	-	ATP synthase B subunit
88	 65.95	0	106780..107340	+	186	51891226	-	STH88	-	ATP synthase delta subunit
89	 66.40	0	107349..108869	+	506	51891227	-	STH89	-	F0F1 ATP synthase subunit alpha
90	 67.01	0	108885..109751	+	288	51891228	-	STH90	-	F0F1 ATP synthase subunit gamma
91	 66.46	0	109785..111203	+	472	51891229	-	STH91	-	F0F1 ATP synthase subunit beta
92	 70.95	0	111205..111624	+	139	51891230	-	STH92	-	ATP synthase epsilon subunit
93	 74.04	+1	111720..112424	-	234	51891231	-	STH93	-	hypothetical protein
94	 71.05	0	112455..113915	-	486	51891232	-	STH94	-	iron-sulphur protein
95	 67.89	0	113905..114642	-	245	51891233	-	STH95	-	glycolate oxidase
96	 70.64	0	114657..116393	-	578	51891234	-	STH96	-	L-lactate permease
97	 71.19	0	116588..117295	-	235	51891235	-	STH97	-	GntR family transcriptional regulator
98	 70.12	0	117282..118526	-	414	51891236	-	STH98	-	hypothetical protein
99	 67.23	0	118538..119428	-	296	51891237	-	STH99	-	hypothetical protein
100	 78.08	+2	119785..120546	+	253	51891238	-	STH100	-	hypothetical protein
68.88	MEAN

4.16	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.