IslandPathversion 1.0

IslandPath Analysis: Methanosaeta thermophila PT



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 54.56 STD DEV: 3.23
Methanosaeta thermophila PT, complete genome - 1..1879471
1696 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 54.72	0	100..1020	-	306	116753326	-	Mthe_0001	-	quinolinate synthetase complex, A subunit
2	 52.05	0	1966..2574	-	202	116753327	-	Mthe_0002	-	hypothetical protein
3	 57.30	0	2618..3631	-	337	116753328	-	Mthe_0003	-	RNA 3'-terminal-phosphate cyclase
4	 51.45	0	3628..3903	-	91	116753329	-	Mthe_0004	-	RNA polymerase, dimerisation
5	 53.05	0	3914..4471	-	185	116753330	-	Mthe_0005	-	exosome complex RNA-binding protein Csl4
6	 53.97	0	4476..5105	-	209	116753331	-	Mthe_0006	-	methyltransferase small
7	 54.76	0	5227..6981	-	584	116753332	-	Mthe_0007	-	putative ATPase RIL
8	 49.76	-1	6991..7410	-	139	116753333	-	Mthe_0008	-	hypothetical protein
9	 50.18	-1	8008..8286	+	92	116753334	-	Mthe_0009	-	MoaD family protein
10	 52.27	0	8287..8682	+	131	116753335	-	Mthe_0010	-	molybdopterin biosynthesis MoaE
11	 52.83	0	8661..8978	+	105	116753336	-	Mthe_0011	-	CutA1 divalent ion tolerance protein
12	 53.63	0	9232..9699	+	155	116753337	-	Mthe_0012	-	hypothetical protein
13	 56.00	0	10103..11386	+	427	116753338	-	Mthe_0013	-	phenylacetate--CoA ligase
14	 55.21	0	11419..11802	+	127	116753339	-	Mthe_0014	-	phosphoribosylaminoimidazole carboxylase
15	 56.48	0	11856..12287	+	143	116753340	-	Mthe_0015	-	UspA domain-containing protein
16	 56.23	0	12657..13691	+	344	116753341	-	Mthe_0016	-	radical SAM domain-containing protein
17	 50.17	-1	13730..14032	+	100	116753342	-	Mthe_0017	-	hypothetical protein
18	 55.76	0	14069..15562	-	497	116753343	-	Mthe_0018	-	radical SAM domain-containing protein
19	 56.61	0	15964..17475	+	503	116753344	-	Mthe_0019	-	hypothetical protein
20	 56.07	0	17472..17858	+	128	116753345	-	Mthe_0020	-	4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
21	 57.04	0	18006..18992	+	328	116753346	-	Mthe_0021	-	protein of unknown function Met10
22	 58.36	+1	19073..20974	-	633	116753347	-	Mthe_0022	-	glutamyl-tRNA(Gln) amidotransferase subunit E
23	 54.39	0	21000..21227	-	75	116753348	-	Mthe_0023	-	transcription factor
24	 52.26	0	21765..22250	+	161	116753349	leuD	Mthe_0024	-	3-isopropylmalate dehydratase small subunit
25	 54.31	0	22247..23371	+	374	116753350	-	Mthe_0025	-	3-isopropylmalate dehydrogenase
26	 53.16	0	23572..23808	+	78	116753351	rpoH	Mthe_0026	-	DNA-directed RNA polymerase subunit H
27	 54.59	0	23826..25316	+	496	116753352	-	Mthe_0027	-	DNA-directed RNA polymerase subunit beta''
28	 56.58	0	25309..27123	+	604	116753353	-	Mthe_0028	-	DNA-directed RNA polymerase subunit B'
29	 56.56	0	27132..29762	+	876	116753354	-	Mthe_0029	-	DNA-directed RNA polymerase subunit alpha
30	 56.97	0	29759..30913	+	384	116753355	-	Mthe_0030	-	DNA-directed RNA polymerase subunit A''
31	 57.05	0	30910..31221	+	103	116753356	-	Mthe_0031	-	ribosomal protein L7Ae/L30e/S12e/Gadd45
32	 49.31	-1	31214..31645	+	143	116753357	-	Mthe_0032	-	NusA family protein
33	 58.39	+1	31707..32129	+	140	116753358	rps12P	Mthe_0033	-	30S ribosomal protein S12P
34	 55.20	0	32134..32691	+	185	116753359	-	Mthe_0034	-	30S ribosomal protein S7P
35	 56.76	0	32799..33515	-	238	116753360	-	Mthe_0035	-	formate dehydrogenase family accessory protein FdhD
36	 56.75	0	33791..34768	+	325	116753361	-	Mthe_0036	-	daunorubicin resistance ABC transporter ATPase subunit
37	 54.95	0	34770..35537	+	255	116753362	-	Mthe_0037	-	ABC-2 type transporter
38	 53.00	0	35534..35950	-	138	116753363	-	Mthe_0038	-	hypothetical protein
39	 53.19	0	36677..37084	+	135	116753364	-	Mthe_0039	-	hypothetical protein
40	 57.17	0	37127..37600	+	157	116753365	-	Mthe_0040	-	hypothetical protein
41	 58.19	+1	37597..38292	+	231	116753366	-	Mthe_0041	-	triosephosphate isomerase
42	 56.41	0	38297..38569	+	90	116753367	-	Mthe_0042	-	acylphosphatase
43	 59.44	+1	38588..38767	+	59	116753368	-	Mthe_0043	-	4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
44	 59.27	+1	38764..39939	+	391	116753369	-	Mthe_0044	-	geranylgeranyl reductase
45	 54.19	0	40177..40641	-	154	116753370	-	Mthe_0045	-	peptidylprolyl isomerase
46	 52.53	0	41252..43309	+	685	116753371	-	Mthe_0046	-	carbohydrate-binding and sugar hydrolysis
47	 53.17	0	43314..43802	+	162	116753372	-	Mthe_0047	-	AsnC family transcriptional regulator
48	 53.96	0	44469..45704	+	411	116753373	hemA	Mthe_0049	-	glutamyl-tRNA reductase
49	 55.56	0	45701..46654	+	317	116753374	-	Mthe_0050	-	delta-aminolevulinic acid dehydratase
50	 55.33	0	47213..47662	+	149	116753375	-	Mthe_0051	-	hypothetical protein
51	 56.51	0	47742..48332	+	196	116753376	-	Mthe_0052	-	hypothetical protein
52	 56.91	0	48431..49045	-	204	116753377	-	Mthe_0053	-	hypothetical protein
53	 53.11	0	49204..49476	-	90	116753378	-	Mthe_0054	-	hypothetical protein
54	 53.56	0	49689..50306	-	205	116753379	-	Mthe_0055	-	gas vesicle synthesis GvpLGvpF
55	 54.21	0	50355..50627	-	90	116753380	-	Mthe_0056	-	gas vesicle synthesis family protein
56	 56.75	0	50640..51002	-	120	116753381	-	Mthe_0057	-	hypothetical protein
57	 55.02	0	50995..52050	-	351	116753382	-	Mthe_0058	-	gas vesicle protein GvpN
58	 54.11	0	52091..52990	-	299	116753383	-	Mthe_0059	-	hypothetical protein
59	 57.58	0	53028..53258	-	76	116753384	-	Mthe_0060	-	gas vesicle synthesis protein GvpA
60	 57.33	0	53270..53494	-	74	116753385	-	Mthe_0061	-	gas vesicle synthesis protein GvpA
61	 57.33	0	53506..53730	-	74	116753386	-	Mthe_0062	-	gas vesicle synthesis protein GvpA
62	 57.33	0	53742..53966	-	74	116753387	-	Mthe_0063	-	gas vesicle synthesis protein GvpA
63	 52.78	0	54364..54723	+	119	116753388	-	Mthe_0064	-	response regulator receiver protein
64	 47.88	-2	54727..55860	+	377	116753389	-	Mthe_0065	-	PAS/PAC sensor signal transduction histidine kinase
65	 56.00	0	55886..56485	+	199	116753390	-	Mthe_0066	-	hypothetical protein
66	 50.26	-1	56694..57083	+	129	116753391	-	Mthe_0067	-	PadR-like family transcriptional regulator
67	 53.45	0	57080..57760	+	226	116753392	-	Mthe_0068	-	signal transduction ATPase
68	 51.81	0	58024..58272	+	82	116753393	-	Mthe_0069	-	hypothetical protein
69	 58.53	+1	58334..58714	+	126	116753394	-	Mthe_0070	-	gas vesicle protein GVPa
70	 53.54	0	58704..59396	+	230	116753395	-	Mthe_0071	-	gas vesicle protein GVPa
71	 53.65	0	59420..59734	+	104	116753396	-	Mthe_0072	-	gas vesicle K
72	 53.04	0	59721..60755	+	344	116753397	-	Mthe_0073	-	gas vesicle synthesis GvpLGvpF
73	 53.33	0	61853..62692	-	279	116753398	-	Mthe_0074	-	hypothetical protein
74	 57.86	+1	62703..63122	-	139	116753399	-	Mthe_0075	-	hypothetical protein
75	 53.52	0	63154..63480	-	108	116753400	-	Mthe_0076	-	PRC-barrel domain-containing protein
76	 56.89	0	63480..65699	-	739	116753401	-	Mthe_0077	-	AAA family ATPase, CDC48 subfamily protein
77	 56.21	0	65888..67762	-	624	116753402	-	Mthe_0078	-	peptidyl-arginine deiminase
78	 54.87	0	67781..68416	-	211	116753403	-	Mthe_0079	-	30S ribosomal protein S3Ae
79	 53.84	0	68755..69627	-	290	116753404	-	Mthe_0080	-	ATP phosphoribosyltransferase
80	 53.75	0	70157..70969	+	270	116753405	-	Mthe_0081	-	hypothetical protein
81	 54.35	0	71407..73314	-	635	116753406	-	Mthe_0082	-	beta-lactamase domain-containing protein
82	 56.25	0	73335..73958	-	207	116753407	-	Mthe_0083	-	proteasome endopeptidase complex
83	 58.89	+1	74262..75470	+	402	116753408	-	Mthe_0084	-	ammonium transporter
84	 55.16	0	75480..75818	+	112	116753409	-	Mthe_0085	-	nitrogen regulatory protein P-II
85	 53.79	0	76187..78097	+	636	116753410	-	Mthe_0086	-	acetyl-CoA hydrolase/transferase
86	 56.95	0	78173..79273	-	366	116753411	-	Mthe_0087	-	TPR repeat-containing protein
87	 57.35	0	80258..80890	+	210	116753412	-	Mthe_0088	-	hypothetical protein
88	 55.02	0	81214..81831	-	205	116753413	-	Mthe_0089	-	orotate phosphoribosyltransferase
89	 52.44	0	81828..82277	-	149	116753414	-	Mthe_0090	-	hypothetical protein
90	 49.52	-1	82941..83873	+	310	116753415	-	Mthe_0091	-	cobalt ABC transporter, inner membrane subunit CbiQ
91	 52.06	0	83870..84718	+	282	116753416	-	Mthe_0092	-	ABC transporter related
92	 54.27	0	85407..86447	+	346	116753417	-	Mthe_0093	-	TGS domain-containing protein
93	 55.56	0	86633..87010	+	125	116753418	-	Mthe_0094	-	carboxymuconolactone decarboxylase
94	 58.33	+1	87152..87955	-	267	116753419	-	Mthe_0095	-	hypothetical protein
95	 49.95	-1	87952..88998	-	348	116753420	-	Mthe_0096	-	AsnC family transcriptional regulator
96	 53.46	0	89794..90270	-	158	116753421	-	Mthe_0097	-	hypothetical protein
97	 56.65	0	90267..91055	-	262	116753422	-	Mthe_0098	-	phosphoribosylformylglycinamidine synthase I
98	 58.00	+1	91052..93358	-	768	116753423	-	Mthe_0099	-	phosphoribosylformylglycinamidine synthase II
99	 54.11	0	93645..94058	-	137	116753424	-	Mthe_0100	-	hypothetical protein
100	 56.34	0	94211..95236	-	341	116753425	-	Mthe_0101	-	glycerophosphoryl diester phosphodiesterase
54.56	MEAN

3.23	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.