IslandPath Analysis: Parvibaculum lavamentivorans DS-1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 62.59   STD DEV: 3.59
Parvibaculum lavamentivorans DS-1, complete genome - 1..3914745
3636 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 63.26	0	179..442	+	87	154250457	-	Plav_0001	-	ribosomal protein S20
2	 66.89	+1	1023..1472	+	149	154250458	-	Plav_0002	-	rhodanese domain-containing protein
3	 64.29	0	1568..3127	+	519	154250459	-	Plav_0003	-	chromosomal replication initiator protein DnaA
4	 63.90	0	3525..4643	+	372	154250460	-	Plav_0004	-	DNA polymerase III subunit beta
5	 69.49	+1	4682..5920	+	412	154250461	-	Plav_0005	-	DNA replication and repair protein RecF
6	 64.00	0	5920..6519	+	199	154250462	-	Plav_0006	-	endopeptidase Clp
7	 63.68	0	6541..8985	+	814	154250463	-	Plav_0007	-	DNA gyrase, B subunit
8	 66.45	+1	9139..11466	+	775	154250464	-	Plav_0008	-	1A family penicillin-binding protein
9	 65.74	0	11463..12647	-	394	154250465	-	Plav_0009	-	Bcr/CflA subfamily drug resistance transporter
10	 65.93	0	12644..13456	-	270	154250466	-	Plav_0010	-	hypothetical protein
11	 61.71	0	13550..13993	+	147	154250467	-	Plav_0011	-	glyoxalase/bleomycin resistance protein/dioxygenase
12	 62.15	0	13995..15233	-	412	154250468	-	Plav_0012	-	polyhydroxyalkanoate depolymerase, intracellular
13	 61.64	0	15461..17152	-	563	154250469	-	Plav_0013	-	2-isopropylmalate synthase
14	 61.27	0	17438..18049	-	203	154250470	-	Plav_0014	-	Classical-complement-pathway C3/C5 convertase
15	 67.18	+1	18219..18803	+	194	154250471	-	Plav_0015	-	ankyrin
16	 65.27	0	18899..19969	+	356	154250472	-	Plav_0016	-	hypothetical protein
17	 66.52	+1	20068..21474	+	468	154250473	-	Plav_0017	-	integral membrane sensor signal transduction histidine kinase
18	 66.19	+1	21475..22101	+	208	154250474	-	Plav_0018	-	two component Fis family transcriptional regulator
19	 62.63	0	22104..22400	-	98	154250475	-	Plav_0019	-	XRE family plasmid maintenance system antidote protein
20	 60.93	0	22425..22703	-	92	154250476	-	Plav_0020	-	plasmid maintenance system killer
21	 65.64	0	22748..23236	-	162	154250477	-	Plav_0021	-	hypothetical protein
22	 66.77	+1	23247..24209	-	320	154250478	-	Plav_0022	-	aminoglycoside phosphotransferase
23	 60.25	0	24241..25362	-	373	154250479	-	Plav_0023	-	hypothetical protein
24	 66.29	+1	25618..26940	+	440	154250480	-	Plav_0024	-	hypothetical protein
25	 61.94	0	27133..28401	+	422	154250481	-	Plav_0025	-	cytochrome P450
26	 61.05	0	28472..29842	+	456	154250482	-	Plav_0026	-	hypothetical protein
27	 61.82	0	30314..32665	+	783	154250483	-	Plav_0027	-	RND superfamily exporter
28	 63.37	0	32770..33618	+	282	154250484	-	Plav_0028	-	sterol desaturase
29	 63.72	0	33622..34875	-	417	154250485	-	Plav_0029	-	cytochrome P450
30	 61.99	0	34929..35570	-	213	154250486	-	Plav_0030	-	HAD family phosphatase
31	 71.64	+2	35655..36659	-	334	154250487	-	Plav_0031	-	sporulation domain-containing protein
32	 67.38	+1	36659..37363	-	234	154250488	-	Plav_0032	-	cobyrinic acid ac-diamide synthase
33	 65.13	0	37628..38929	-	433	154250489	-	Plav_0033	-	adenosylmethionine-8-amino-7-oxononanoate aminotransferase
34	 61.86	0	39183..39785	+	200	154250490	-	Plav_0034	-	hypothetical protein
35	 60.97	0	39782..40132	+	116	154250491	-	Plav_0035	-	hypothetical protein
36	 62.96	0	40109..41215	-	368	154250492	-	Plav_0036	-	biotin synthase
37	 66.52	+1	41259..41918	-	219	154250493	-	Plav_0037	-	2OG-Fe(II) oxygenase
38	 67.93	+1	42013..42885	+	290	154250494	-	Plav_0038	-	hypothetical protein
39	 67.76	+1	42959..44146	+	395	154250495	-	Plav_0039	-	8-amino-7-oxononanoate synthase
40	 67.28	+1	44147..44794	+	215	154250496	-	Plav_0040	-	dethiobiotin synthase
41	 57.04	-1	44796..45086	-	96	154250497	-	Plav_0041	-	hypothetical protein
42	 56.67	-1	45161..45340	-	59	154250498	-	Plav_0042	-	hypothetical protein
43	 63.76	0	45433..45948	-	171	154250499	-	Plav_0043	-	methylated-DNA--protein-cysteine methyltransferase
44	 69.71	+1	45950..47491	-	513	154250500	-	Plav_0044	-	Ada metal-binding domain-containing protein
45	 64.64	0	47696..49030	+	444	154250501	-	Plav_0045	-	major facilitator transporter
46	 67.46	+1	49183..50193	+	336	154250502	-	Plav_0046	-	alcohol dehydrogenase zinc-binding type 2
47	 65.80	0	50270..51079	+	269	154250503	-	Plav_0047	-	ABC-type phosphate transport system periplasmic component-like protein
48	 62.23	0	51324..52721	-	465	154250504	-	Plav_0048	-	phosphate-selective porin O and P
49	 60.93	0	53032..54252	-	406	154250505	-	Plav_0049	-	OsmC family protein
50	 60.35	0	54466..55257	+	263	154250506	-	Plav_0050	-	PRC-barrel domain-containing protein
51	 61.55	0	55568..57325	-	585	154250507	-	Plav_0051	-	signal transduction histidine kinase
52	 57.11	-1	57786..58580	+	264	154250508	-	Plav_0052	-	two-component response regulator
53	 60.56	0	58670..59275	-	201	154250509	-	Plav_0053	-	ECF subfamily RNA polymerase sigma-24 factor
54	 52.70	-2	59281..59502	-	73	154250510	-	Plav_0054	-	hypothetical protein
55	 57.58	-1	59742..59939	-	65	154250511	-	Plav_0055	-	CsbD family protein
56	 57.63	-1	60108..60284	-	58	154250512	-	Plav_0056	-	hypothetical protein
57	 55.56	-1	60343..60558	-	71	154250513	-	Plav_0057	-	entericidin EcnAB
58	 66.86	+1	60579..61100	-	173	154250514	-	Plav_0058	-	MgtC/SapB transporter
59	 61.23	0	61164..61439	-	91	154250515	-	Plav_0059	-	hypothetical protein
60	 56.71	-1	61602..61832	+	76	154250516	-	Plav_0060	-	hypothetical protein
61	 62.87	0	61859..62464	-	201	154250517	-	Plav_0061	-	MOSC domain-containing protein
62	 61.79	0	62801..63292	+	163	154250518	-	Plav_0062	-	hypothetical protein
63	 60.04	0	63308..63760	-	150	154250519	-	Plav_0063	-	hypothetical protein
64	 60.27	0	63853..64227	-	124	154250520	-	Plav_0064	-	response regulator receiver protein
65	 63.08	0	64350..64739	-	129	154250521	-	Plav_0065	-	response regulator receiver protein
66	 61.14	0	64830..66530	-	566	154250522	-	Plav_0066	-	hypothetical protein
67	 69.48	+1	66777..67808	+	343	154250523	-	Plav_0067	-	PE-PGRS family protein
68	 61.85	0	67908..69587	-	559	154250524	-	Plav_0068	-	polypeptide-transport-associated domain-containing protein
69	 66.04	0	70095..71048	+	317	154250525	-	Plav_0069	-	SAF domain-containing protein
70	 60.10	0	71065..72450	+	461	154250526	-	Plav_0070	-	type II and III secretion system protein
71	 62.14	0	72457..73650	+	397	154250527	-	Plav_0071	-	response regulator receiver protein
72	 59.90	0	73647..74873	+	408	154250528	-	Plav_0072	-	type II secretion system protein E
73	 61.19	0	74940..75815	+	291	154250529	-	Plav_0073	-	type II secretion system protein
74	 63.71	0	75821..76768	+	315	154250530	-	Plav_0074	-	type II secretion system protein
75	 63.31	0	76765..77478	+	237	154250531	-	Plav_0075	-	TPR repeat-containing protein
76	 62.55	0	77478..77720	+	80	154250532	-	Plav_0076	-	hypothetical protein
77	 59.79	0	77865..78155	+	96	154250533	-	Plav_0077	-	Flp/Fap pilin component
78	 62.65	0	78243..78665	+	140	154250534	-	Plav_0078	-	TadE family protein
79	 63.57	0	78675..80807	+	710	154250535	-	Plav_0079	-	histidine kinase
80	 62.14	0	80820..81593	-	257	154250536	-	Plav_0080	-	two component transcriptional regulator
81	 64.52	0	82194..82613	-	139	154250537	-	Plav_0081	-	hypothetical protein
82	 64.76	0	82741..84153	-	470	154250538	-	Plav_0082	-	cytochrome P450
83	 61.48	0	84177..85025	-	282	154250539	-	Plav_0083	-	metal-dependent hydrolase-like protein
84	 63.57	0	85148..86212	+	354	154250540	-	Plav_0084	-	helix-turn-helix domain-containing protein
85	 70.28	+2	86257..87141	+	294	154250541	-	Plav_0085	-	putative membrane protein, glycine-rich
86	 68.05	+1	87350..88216	+	288	154250542	-	Plav_0086	-	hypothetical protein
87	 62.71	0	88270..90267	+	665	154250543	-	Plav_0087	-	hypothetical protein
88	 66.07	0	90359..91024	-	221	154250544	-	Plav_0088	-	TetR family transcriptional regulator
89	 64.59	0	91116..92222	+	368	154250545	-	Plav_0089	-	alcohol dehydrogenase
90	 65.22	0	92262..93506	+	414	154250546	-	Plav_0090	-	acetyl-CoA acetyltransferase
91	 62.83	0	93572..93988	+	138	154250547	-	Plav_0091	-	MerR family transcriptional regulator
92	 64.10	0	94039..95442	+	467	154250548	-	Plav_0092	-	aldehyde dehydrogenase
93	 65.08	0	95540..96799	-	419	154250549	-	Plav_0093	-	ferric reductase domain-containing protein
94	 68.93	+1	96883..97236	-	117	154250550	-	Plav_0094	-	hypothetical protein
95	 59.95	0	97370..98962	-	530	154250551	-	Plav_0095	-	aspartate aminotransferase
96	 61.98	0	98980..100665	-	561	154250552	-	Plav_0096	-	YidE/YbjL duplication
97	 51.96	-2	104498..104803	-	101	154250553	-	Plav_0097	-	CRISPR-associated Cas2 family protein
98	 59.19	0	104851..105786	-	311	154250554	-	Plav_0098	-	CRISPR-associated Cas1 family protein
99	 55.56	-1	105795..108908	-	1037	154250555	-	Plav_0099	-	CRISPR-associated endonuclease Csn1 family protein
100	 58.36	-1	109701..110807	+	368	154250556	-	Plav_0100	-	hypothetical protein
62.59	MEAN

3.59	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.