IslandPath Analysis: Candidatus Vesicomyosocius okutanii HA



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 32.44   STD DEV: 3.07
Candidatus Vesicomyosocius okutanii HA, complete genome - 1..1022154
937 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 27.38	-1	1..1293	+	430	148244170	dnaA	COSY_0001	-	chromosomal replication initiator protein DnaA
2	 20.47	-2	1507..2610	+	367	148244171	dnaN	COSY_0002	-	DNA polymerase III beta subunit
3	 26.43	-1	2711..5128	+	805	148244172	gyrB	COSY_0003	-	DNA gyrase subunit B GyrB
4	 29.35	-1	5149..6027	+	292	148244173	prkB	COSY_0004	-	phosphoribulokinase
5	 27.94	-1	6084..8531	-	815	148244174	leuS	COSY_0005	-	leucyl-tRNA synthetase
6	 30.57	0	8528..9505	-	325	148244175	pyrD	COSY_0006	-	dihydroorotase dehydrogenase
7	 28.73	-1	9545..10195	+	216	148244176	bioD	COSY_0007	-	dethiobiotin synthase
8	 28.61	-1	10184..10522	-	112	148244177	sspB	COSY_0008	-	stringent starvation protein B
9	 30.82	0	10519..11154	-	211	148244178	sspA	COSY_0009	-	stringent starvation protein A
10	 27.95	-1	11193..11879	-	228	148244179	petC	COSY_0010	-	ubiquinol-cytochrome c reductase cytochrome c1 subunit
11	 33.91	0	11884..13107	-	407	148244180	petB	COSY_0011	-	ubiquinol-cytochrome c reductase cytochrome b subunit
12	 37.52	+1	13121..13717	-	198	148244181	petA	COSY_0012	-	ubiquinol-cytochrome c reductase iron-sulfur subunit
13	 26.14	-2	13826..14131	-	101	148244182	-	COSY_0013	-	hypothetical protein
14	 33.26	0	14184..16877	+	897	148244183	secA	COSY_0014	-	preprotein translocase SecA subunit
15	 33.92	0	17357..18385	+	342	148244184	pyrC	COSY_0015	-	dihydroorotase
16	 29.90	0	18778..19680	-	300	148244185	ribF	COSY_0016	-	bifunctional riboflavin biosynthesis protein RibF
17	 33.62	0	19999..21054	-	351	148244186	metA	COSY_0017	-	homoserine O-succinyltransferase
18	 31.90	0	21054..21890	-	278	148244187	-	COSY_0018	-	hypothetical protein
19	 36.11	+1	21918..23105	-	395	148244188	-	COSY_0019	-	aminotransferase
20	 36.70	+1	23136..23462	-	108	148244189	fkpA	COSY_0020	-	peptidyl-prolyl cis-trans isomerase
21	 30.34	0	23474..24274	-	266	148244190	-	COSY_0021	-	hypothetical protein
22	 32.08	0	24280..25155	-	291	148244191	purC	COSY_0022	-	phosphoribosylaminoimidazole-succinocarboxamide synthase
23	 32.04	0	25265..25882	+	205	148244192	-	COSY_0023	-	hypothetical protein
24	 31.46	0	25842..27014	-	390	148244193	-	COSY_0024	-	hypothetical protein
25	 35.07	0	26989..28140	-	383	148244194	dxr	COSY_0025	-	1-deoxy-D-xylulose 5-phosphate reductoisomerase
26	 31.84	0	28137..28937	-	266	148244195	cdsA	COSY_0026	-	phosphatidate cytidylyltransferase
27	 32.05	0	28948..29649	-	233	148244196	uppS	COSY_0027	-	undecaprenyl diphosphate synthase
28	 36.85	+1	29735..30502	+	255	148244197	hisF	COSY_0028	-	imidazole glycerol phosphate synthase subunit HisF
29	 31.47	0	30571..31107	+	178	148244198	-	COSY_0029	-	hypothetical protein
30	 36.13	+1	31120..32013	+	297	148244199	cyoE	COSY_0030	-	protoheme IX farnesyltransferase
31	 27.60	-1	32014..32205	+	63	148244200	-	COSY_0031	-	hypothetical protein
32	 33.03	0	32314..33288	-	324	148244201	-	COSY_0032	-	cytochrome c oxidase assembly protein
33	 32.49	0	33389..34216	-	275	148244202	-	COSY_0033	-	hypothetical protein
34	 35.68	+1	34428..35537	+	369	148244203	coxB	COSY_0034	-	cytochrome c oxidase subunit II
35	 37.64	+1	35563..37164	+	533	148244204	coxA	COSY_0035	-	cytochrome c oxidase subunit I
36	 30.52	0	37255..37788	+	177	148244205	-	COSY_0036	-	cytochrome c oxidase assembly protein
37	 35.59	+1	37806..38690	+	294	148244206	coxC	COSY_0037	-	cytochrome c oxidase subunit III
38	 29.82	0	38756..38983	+	75	148244207	-	COSY_0038	-	hypothetical protein
39	 29.77	0	38980..39681	+	233	148244208	-	COSY_0039	-	hypothetical protein
40	 36.08	+1	39798..41216	+	472	148244209	ccoN	COSY_0040	-	cbb3-type cytochrome c oxidase subunit I
41	 37.43	+1	41231..41962	+	243	148244210	ccoO	COSY_0041	-	cbb3-type cytochrome c oxidase subunit II
42	 26.95	-1	41962..42102	+	46	148244211	ccoQ	COSY_0042	-	cbb3-type cytochrome c oxidase subunit IV
43	 34.11	0	42121..43023	+	300	148244212	ccoP	COSY_0043	-	cbb3-type cytochrome c oxidase subunit III
44	 26.02	-2	43633..44001	-	122	148244213	-	COSY_0044	-	hypothetical protein
45	 31.34	0	44001..44201	-	66	148244214	-	COSY_0045	-	hypothetical protein
46	 32.37	0	44194..46470	-	758	148244215	ftsK	COSY_0046	-	cell division protein FtsK
47	 35.03	0	46519..47463	+	314	148244216	trxB	COSY_0047	-	thioredoxin-disulfide reductase
48	 35.51	+1	48071..49033	-	320	148244217	pyrB	COSY_0049	-	aspartate carbamoyltransferase catalytic chain
49	 28.90	-1	49014..49442	-	142	148244218	-	COSY_0050	-	hypothetical protein
50	 31.91	0	49439..49720	-	93	148244219	-	COSY_0051	-	hypothetical protein
51	 30.48	0	49850..50515	-	221	148244220	-	COSY_0052	-	hypothetical protein
52	 32.24	0	50634..51548	+	304	148244221	apbE	COSY_0053	-	thiamin biosynthesis lipoprotein ApbE
53	 34.61	0	52239..52631	+	130	148244222	-	COSY_0054	-	hypothetical protein
54	 30.22	0	52628..53590	-	320	148244223	gshB	COSY_0055	-	glutathione synthetase
55	 31.17	0	53808..54269	+	153	148244224	-	COSY_0057	-	hypothetical protein
56	 36.72	+1	54310..55785	+	491	148244225	nusA	COSY_0058	-	transcription termination factor NusA
57	 37.42	+1	55839..58286	+	815	148244226	infB	COSY_0059	-	translation initiation factor IF-2
58	 33.04	0	58301..58645	+	114	148244227	rbfA	COSY_0060	-	ribosome-binding factor A
59	 33.11	0	58668..59576	+	302	148244228	truB	COSY_0061	-	tRNA pseudouridine synthase B
60	 34.58	0	59816..61099	+	427	148244229	purD	COSY_0062	-	phosphoribosylamine--glycine ligase
61	 33.33	0	61656..62363	-	235	148244230	-	COSY_0063	-	hypothetical protein
62	 33.21	0	62682..63512	+	276	148244231	-	COSY_0064	-	methyltransferase
63	 26.24	-2	63752..64357	-	201	148244232	coaE	COSY_0065	-	dephospho-CoA kinase
64	 32.39	0	65198..65623	-	141	148244233	-	COSY_0067	-	nuclease
65	 28.92	-1	66489..66692	-	67	148244234	-	COSY_0068	-	hypothetical protein
66	 28.02	-1	68273..68479	-	68	148244235	-	COSY_0069	-	hypothetical protein
67	 38.22	+1	69410..71395	+	661	148244236	tktA	COSY_0070	-	transketolase
68	 35.14	0	71501..72496	+	331	148244237	gapA	COSY_0071	-	glyceraldehyde-3-phosphate dehydrogenase
69	 38.51	+1	72944..74122	+	392	148244238	pgk	COSY_0072	-	3-phosphoglycerate kinase
70	 34.23	0	74115..75557	+	480	148244239	-	COSY_0073	-	pyruvate kinase
71	 37.57	+1	75633..76694	+	353	148244240	fbaA	COSY_0074	-	fructose-bisphosphate aldolase, class II
72	 35.48	0	76761..78626	+	621	148244241	gidA	COSY_0075	-	tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
73	 26.97	-1	78995..79795	+	266	148244242	-	COSY_0076	-	hypothetical protein
74	 32.68	0	79802..80572	+	256	148244243	tatD	COSY_0077	-	Mg-dependent deoxyribonuclease
75	 31.47	0	80569..81480	+	303	148244244	rluC	COSY_0078	-	ribosomal large subunit pseudouridine synthase C
76	 29.54	0	81477..82346	+	289	148244245	ubiA	COSY_0079	-	4-hydroxybenzoate octaprenyltransferase
77	 35.91	+1	82865..83680	-	271	148244246	dapD	COSY_0080	-	2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransferase
78	 32.40	0	83842..85236	+	464	148244247	-	COSY_0081	-	ferredoxin
79	 33.96	0	85236..85715	+	159	148244248	-	COSY_0082	-	hypothetical protein
80	 31.81	0	86107..86826	-	239	148244249	znuC	COSY_0083	-	zinc ABC transporter ATP-binding protein
81	 30.40	0	86918..89647	+	909	148244250	polA	COSY_0084	-	DNA polymerase I
82	 32.17	0	90504..92222	+	572	148244251	argS	COSY_0085	-	arginyl-tRNA synthetase
83	 30.24	0	92219..95389	+	1056	148244252	-	COSY_0086	-	ATP-dependent DNA helicase
84	 31.10	0	96260..96841	-	193	148244253	thiE	COSY_0087	-	thiamine-phosphate pyrophosphorylase
85	 26.05	-2	96753..97796	+	347	148244254	-	COSY_0088	-	hypothetical protein
86	 35.32	0	98093..99301	+	402	148244255	sat	COSY_0089	-	ATP sulfurylase
87	 33.45	0	99516..100385	+	289	148244256	aprM	COSY_0090	-	adenylylsulfate reductase membrane anchor
88	 36.88	+1	100417..100896	+	159	148244257	aprB	COSY_0091	-	adenylylsulfate reductase beta subunit
89	 38.85	+2	100896..102779	+	627	148244258	aprA	COSY_0092	-	adenylylsulfate reductase
90	 32.58	0	102845..103240	+	131	148244259	-	COSY_0093	-	hypothetical protein
91	 31.36	0	103246..103752	+	168	148244260	-	COSY_0094	-	peptidyl-prolyl cis-trans isomerase
92	 26.84	-1	103755..104108	+	117	148244261	-	COSY_0095	-	hypothetical protein
93	 39.03	+2	104183..106183	-	666	148244262	hppA	COSY_0096	-	membrane-bound proton-translocating pyrophosphatase
94	 35.00	0	106680..107339	-	219	148244263	adk	COSY_0097	-	adenylate kinase
95	 36.31	+1	107449..108693	-	414	148244264	pfkA	COSY_0098	-	6-phosphofructokinase
96	 31.47	0	108746..109228	-	160	148244265	-	COSY_0099	-	hypothetical protein
97	 33.69	0	109916..111304	-	462	148244266	cysS	COSY_0100	-	cysteinyl-tRNA synthetase
98	 35.50	0	111445..112044	+	199	148244267	ahpC	COSY_0101	-	peroxiredoxin
99	 38.60	+2	112092..112262	+	56	148244268	rubA	COSY_0102	-	rubredoxin
100	 36.88	+1	112298..113368	+	356	148244269	leuB	COSY_0103	-	3-isopropylmalate dehydrogenase
32.44	MEAN

3.07	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.