IslandPath Analysis: Vibrio harveyi ATCC BAA-1116



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 45.58   STD DEV: 3.31
Vibrio harveyi ATCC BAA-1116 chromosome I, complete genome - 1..3765351
3546 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 45.26	0	2016..2795	-	259	156972383	-	VIBHAR_00003	-	phosphoadenosine phosphosulfate reductase
2	 45.77	0	2788..4524	-	578	156972384	-	VIBHAR_00004	-	sulfite reductase subunit beta
3	 45.94	0	4524..6419	-	631	156972385	-	VIBHAR_00005	-	sulfite reductase (NADPH) flavoprotein subunit alpha
4	 47.19	0	6516..6746	-	76	156972386	-	VIBHAR_00006	-	thymidylate kinase
5	 43.09	0	6896..7561	-	221	156972387	-	VIBHAR_00007	-	hypothetical protein
6	 41.67	-1	7662..7877	-	71	156972388	-	VIBHAR_00008	-	phage shock protein G
7	 48.39	0	8041..8943	-	300	156972389	-	VIBHAR_00009	-	tRNA-dihydrouridine synthase A
8	 45.27	0	9277..9762	+	161	156972390	-	VIBHAR_00010	-	zinc uptake regulation protein
9	 46.10	0	9781..10242	+	153	156972391	-	VIBHAR_00011	-	chemotaxis protein CheX
10	 46.46	0	10344..11996	-	550	156972392	-	VIBHAR_00012	-	glucose-6-phosphate isomerase
11	 36.54	-2	12088..12243	+	51	156972393	-	VIBHAR_00013	-	hypothetical protein
12	 43.75	0	12243..12722	+	159	156972394	-	VIBHAR_00014	-	hypothetical protein
13	 49.36	+1	12776..13786	-	336	156972395	-	VIBHAR_00015	-	hypothetical protein
14	 43.17	0	13874..15235	-	453	156972396	-	VIBHAR_00016	-	transposase
15	 49.50	+1	15413..16513	-	366	156972397	-	VIBHAR_00017	-	alanine racemase
16	 49.18	+1	16503..17903	-	466	156972398	-	VIBHAR_00018	-	replicative DNA helicase
17	 45.10	0	18224..18988	+	254	156972399	-	VIBHAR_00019	-	hypothetical protein
18	 45.70	0	19074..19526	-	150	156972400	-	VIBHAR_00020	-	50S ribosomal protein L9
19	 45.18	0	19559..19786	-	75	156972401	-	VIBHAR_00021	-	30S ribosomal protein S18
20	 46.74	0	19803..20093	-	96	156972402	-	VIBHAR_00022	-	primosomal replication protein N
21	 48.21	0	20114..20503	-	129	156972403	-	VIBHAR_00023	-	30S ribosomal protein S6
22	 46.58	0	20748..21419	-	223	156972404	-	VIBHAR_00024	-	ribulose-phosphate 3-epimerase
23	 46.79	0	21522..22361	-	279	156972405	-	VIBHAR_00025	-	DNA adenine methylase
24	 45.98	0	22431..23924	-	497	156972406	-	VIBHAR_00026	-	hypothetical protein
25	 47.05	0	23978..25078	-	366	156972407	-	VIBHAR_00027	-	3-dehydroquinate synthase
26	 46.63	0	25110..25628	-	172	156972408	-	VIBHAR_00028	-	shikimate kinase I
27	 44.92	0	25817..27568	-	583	156972409	-	VIBHAR_00029	-	type IV pilus secretin PilQ
28	 48.64	0	27600..28115	-	171	156972410	-	VIBHAR_00030	-	fimbrial assembly protein PilP
29	 45.12	0	28105..28698	-	197	156972411	-	VIBHAR_00031	-	fimbrial assembly protein PilO
30	 45.14	0	28691..29266	-	191	156972412	-	VIBHAR_00032	-	fimbrial assembly protein PilN
31	 44.57	0	29250..30353	-	367	156972413	-	VIBHAR_00033	-	fimbrial assembly protein PilM
32	 46.81	0	30445..33012	+	855	156972414	-	VIBHAR_00034	-	penicillin-binding protein 1A
33	 46.75	0	33091..33999	-	302	156972415	-	VIBHAR_00035	-	DNA-binding transcriptional regulator OxyR
34	 45.40	0	34174..34902	+	242	156972416	-	VIBHAR_00036	-	glutaredoxin
35	 48.13	0	35130..36602	+	490	156972417	-	VIBHAR_00037	-	dihydrolipoamide dehydrogenase
36	 43.81	0	36700..36804	-	34	156972418	-	VIBHAR_00038	-	hypothetical protein
37	 43.20	0	36971..37264	+	97	156972419	-	VIBHAR_00039	-	hypothetical protein
38	 48.53	0	37419..39293	-	624	156972420	-	VIBHAR_00040	-	bifunctional argininosuccinate lyase/N-acetylglutamate synthase
39	 47.08	0	39544..40758	-	404	156972421	-	VIBHAR_00041	-	argininosuccinate synthase
40	 50.00	+1	40849..41640	-	263	156972422	-	VIBHAR_00042	-	acetylglutamate kinase
41	 46.57	0	41662..42666	-	334	156972423	-	VIBHAR_00043	-	N-acetyl-gamma-glutamyl-phosphate reductase
42	 48.20	0	42811..43947	+	378	156972424	-	VIBHAR_00044	-	acetylornithine deacetylase
43	 49.42	+1	44193..46859	+	888	156972425	-	VIBHAR_00045	-	phosphoenolpyruvate carboxylase
44	 46.37	0	47235..47840	+	201	156972426	-	VIBHAR_00046	-	transcriptional regulator
45	 48.39	0	47911..48813	-	300	156972427	-	VIBHAR_00047	-	5,10-methylenetetrahydrofolate reductase
46	 48.94	+1	49085..51493	-	802	156972428	-	VIBHAR_00048	-	bifunctional aspartate kinase II/homoserine dehydrogenase II
47	 47.72	0	51510..52670	-	386	156972429	-	VIBHAR_00049	-	cystathionine gamma-synthase
48	 45.79	0	52900..53220	+	106	156972430	-	VIBHAR_00050	-	transcriptional repressor protein MetJ
49	 46.95	0	53331..54608	-	425	156972431	-	VIBHAR_00051	-	malate oxidoreductase
50	 43.16	0	54818..55336	-	172	156972432	-	VIBHAR_00052	-	bacterioferritin
51	 42.86	0	55369..55557	-	62	156972433	-	VIBHAR_00053	-	bacterioferritin-associated ferredoxin
52	 46.84	0	55894..57078	-	394	156972434	-	VIBHAR_00054	-	elongation factor Tu
53	 47.29	0	57234..59333	-	699	156972435	-	VIBHAR_00055	-	elongation factor G
54	 45.65	0	59472..59942	-	156	156972436	-	VIBHAR_00056	-	30S ribosomal protein S7
55	 46.93	0	60043..60417	-	124	156972437	-	VIBHAR_00057	-	30S ribosomal protein S12
56	 44.93	0	60595..60870	-	91	156972438	-	VIBHAR_00058	-	hypothetical protein
57	 47.90	0	60878..61234	-	118	156972439	-	VIBHAR_00059	-	sulfur oxidation protein dsrF
58	 51.01	+1	61231..61626	-	131	156972440	-	VIBHAR_00060	-	hypothetical protein
59	 45.61	0	61629..62345	-	238	156972441	-	VIBHAR_00061	-	hypothetical protein
60	 44.57	0	62490..63272	-	260	156972442	-	VIBHAR_00062	-	peptidyl-prolyl cis-trans isomerase
61	 49.85	+1	63401..64387	+	328	156972443	-	VIBHAR_00063	-	hypothetical protein
62	 41.67	-1	64384..64611	+	75	156972444	-	VIBHAR_00064	-	hypothetical protein
63	 50.21	+1	64705..65646	-	313	156972445	-	VIBHAR_00065	-	L-asparaginase
64	 47.41	0	65777..66316	-	179	156972446	-	VIBHAR_00066	-	peptidyl-prolyl cis-trans isomerase
65	 45.53	0	66405..66650	-	81	156972447	-	VIBHAR_00067	-	hypothetical protein
66	 50.53	+1	66641..68437	-	598	156972448	-	VIBHAR_00068	-	glutathione-regulated potassium-efflux system protein KefB
67	 47.45	0	68421..69008	-	195	156972449	-	VIBHAR_00069	-	glutathione-regulated potassium-efflux system ancillary protein KefG
68	 48.85	0	69186..71105	+	639	156972450	-	VIBHAR_00070	-	ABC transporter, ATP-binding subunit
69	 46.67	0	71102..71581	+	159	156972451	-	VIBHAR_00071	-	hypothetical protein
70	 49.11	+1	71682..72689	+	335	156972452	-	VIBHAR_00072	-	putative hydrolase
71	 43.19	0	72760..72972	+	70	156972453	-	VIBHAR_00073	-	hypothetical protein
72	 50.23	+1	73097..73966	+	289	156972454	-	VIBHAR_00074	-	phosphoribulokinase
73	 44.87	0	74206..74838	+	210	156972455	-	VIBHAR_00075	-	cAMP-regulatory protein
74	 48.36	0	75036..75827	-	263	156972456	-	VIBHAR_00076	-	hypothetical protein
75	 51.51	+1	76092..77549	-	485	156972457	-	VIBHAR_00077	-	succinylglutamic semialdehyde dehydrogenase
76	 49.22	+1	77578..78597	-	339	156972458	-	VIBHAR_00078	-	arginine N-succinyltransferase
77	 49.17	+1	78706..79917	-	403	156972459	-	VIBHAR_00079	-	bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein
78	 47.79	0	80279..80866	-	195	156972460	-	VIBHAR_00080	-	para-aminobenzoate synthase component II
79	 47.71	0	81056..84004	-	982	156972461	-	VIBHAR_00081	-	nuclease
80	 48.46	0	84733..85770	-	345	156972462	-	VIBHAR_00082	-	tryptophanyl-tRNA synthetase
81	 46.29	0	85886..86572	-	228	156972463	-	VIBHAR_00083	-	phosphoglycolate phosphatase
82	 50.27	+1	86698..87441	-	247	156972464	-	VIBHAR_00084	-	23S rRNA (guanosine-2'-O-)-methyltransferase
83	 48.30	0	87518..90010	-	830	156972465	-	VIBHAR_00085	-	ribonuclease R
84	 43.43	0	90128..90553	-	141	156972466	-	VIBHAR_00086	-	transcriptional repressor NsrR
85	 46.75	0	90665..91849	+	394	156972467	-	VIBHAR_00087	-	nitric oxide dioxygenase
86	 50.31	+1	91956..92591	-	211	156972468	-	VIBHAR_00088	-	sodium-type polar flagellar protein MotX
87	 45.79	0	92824..94140	-	438	156972469	-	VIBHAR_00089	-	adenylosuccinate synthetase
88	 48.15	0	94311..94499	+	62	156972470	-	VIBHAR_00090	-	hypothetical protein
89	 45.46	0	94612..95592	-	326	156972471	-	VIBHAR_00091	-	serine protease
90	 48.09	0	95595..96800	-	401	156972472	-	VIBHAR_00092	-	serine protease
91	 47.52	0	96846..98135	-	429	156972473	-	VIBHAR_00093	-	putative GTPase HflX
92	 47.35	0	98174..98437	-	87	156972474	-	VIBHAR_00094	-	RNA-binding protein Hfq
93	 46.73	0	98632..99564	-	310	156972475	-	VIBHAR_00095	-	tRNA delta(2)-isopentenylpyrophosphate transferase
94	 48.48	0	99561..101606	-	681	156972476	-	VIBHAR_00096	-	DNA mismatch repair protein
95	 47.83	0	101625..103355	-	576	156972477	-	VIBHAR_00097	-	N-acetylmuramoyl-L-alanine amidase
96	 45.38	0	103349..103813	-	154	156972478	-	VIBHAR_00098	-	hypothetical protein
97	 47.25	0	104112..105239	+	375	156972479	-	VIBHAR_00099	-	iron-sulfur cluster-binding protein
98	 44.69	0	107370..107915	-	181	156972480	-	VIBHAR_00112	-	oligoribonuclease
99	 46.92	0	107991..109109	+	372	156972481	-	VIBHAR_00113	-	ribosome-associated GTPase
100	 49.30	+1	109226..110083	+	285	156972482	-	VIBHAR_00114	-	phosphatidylserine decarboxylase
45.58	MEAN

3.31	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.