IslandPath Analysis: Legionella pneumophila str. Paris



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 38.73   STD DEV: 3.23
Legionella pneumophila str. Paris, complete genome - 1..3503610
3027 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 37.38	0	204..1562	+	452	54295984	dnaA	lpp0001	-	chromosomal replication initiator protein DnaA
2	 34.96	-1	1576..2679	+	367	54295985	dnaN	lpp0002	-	DNA polymerase III, beta chain
3	 35.50	-1	2676..3737	+	353	54295986	recF	lpp0003	-	RecF recombinational DNA repair ATPase
4	 39.41	0	4034..6451	+	805	54295987	gyrB	lpp0004	-	DNA gyrase, subunit B (type II topoisomerase)
5	 39.10	0	6821..7861	-	346	54295988	-	lpp0005	-	hypothetical protein
6	 38.93	0	7864..9756	-	630	54295989	speA	lpp0006	-	arginine decarboxylase
7	 43.03	+1	9776..10621	-	281	54295990	-	lpp0007	-	hypothetical protein
8	 39.76	0	11162..12421	-	419	54295991	-	lpp0008	-	hypothetical protein
9	 38.37	0	12609..12866	+	85	54295992	-	lpp0009	-	hypothetical protein
10	 43.61	+1	12894..14138	+	414	54295993	-	lpp0010	-	hypothetical protein
11	 36.52	0	14243..14713	-	156	54295994	-	lpp0011	-	hypothetical protein
12	 41.63	0	14880..16457	-	525	54295995	-	lpp0012	-	hypothetical protein
13	 41.55	0	16603..17442	+	279	54295996	-	lpp0013	-	hypothetical protein
14	 40.77	0	17975..19090	+	371	54295997	-	lpp0014	-	hypothetical protein
15	 35.75	0	19192..20265	+	357	54295998	-	lpp0015	-	hypothetical protein
16	 34.83	-1	20240..21172	+	310	54295999	-	lpp0016	-	hypothetical protein
17	 38.85	0	21157..22062	+	301	54296000	-	lpp0017	-	hypothetical protein
18	 36.65	0	22046..23431	+	461	54296001	-	lpp0018	-	hypothetical protein
19	 37.27	0	23666..25342	+	558	54296002	-	lpp0019	-	hypothetical protein
20	 37.94	0	25563..26474	+	303	54296003	-	lpp0020	-	hypothetical protein
21	 38.54	0	26665..27144	+	159	54296004	-	lpp0021	-	hypothetical protein
22	 39.41	0	27141..29264	+	707	54296005	-	lpp0022	-	23S rRNA m(2)G2445 methyltransferase
23	 37.89	0	29334..29882	-	182	54296006	-	lpp0023	-	hypothetical protein
24	 40.38	0	30029..30454	-	141	54296007	hbp	lpp0024	-	hemin binding protein
25	 42.23	+1	30594..31166	-	190	54296008	rcp	lpp0025	-	palmitoyl transferase for Lipid A
26	 40.01	0	31326..32717	+	463	54296009	-	lpp0026	-	hypothetical protein
27	 42.77	+1	32727..33722	-	331	54296010	-	lpp0027	-	hypothetical protein
28	 43.15	+1	33739..34380	-	213	54296011	-	lpp0028	-	hypothetical protein
29	 36.61	0	34603..37533	+	976	54296012	-	lpp0029	-	hypothetical protein
30	 38.83	0	37645..38535	-	296	54296013	-	lpp0030	-	hypothetical protein
31	 38.78	0	38594..39787	-	397	54296014	-	lpp0031	-	hypothetical protein
32	 41.23	0	39849..40874	-	341	54296015	-	lpp0032	-	hypothetical protein
33	 37.66	0	41138..41899	+	253	54296016	-	lpp0033	-	hypothetical protein
34	 34.73	-1	42156..42512	+	118	54296017	-	lpp0034	-	hypothetical protein
35	 38.31	0	42575..43297	-	240	54296018	-	lpp0035	-	hypothetical protein
36	 34.68	-1	43511..44254	-	247	54296019	-	lpp0036	-	hypothetical protein
37	 38.14	0	44415..45932	-	505	54296020	-	lpp0037	-	hypothetical protein
38	 37.38	0	46159..47244	+	361	54296021	-	lpp0038	-	hypothetical protein
39	 38.78	0	47270..47563	+	97	54296022	-	lpp0039	-	hypothetical protein
40	 32.30	-1	47833..48315	+	160	54296023	-	lpp0040	-	hypothetical protein
41	 40.06	0	48337..49332	-	331	54296024	-	lpp0041	-	hypothetical protein
42	 38.27	0	49497..49820	+	107	54296025	-	lpp0042	-	hypothetical protein
43	 35.77	0	50133..50993	-	286	54296026	-	lpp0043	-	hypothetical protein
44	 44.73	+1	51171..51407	-	78	54296027	-	lpp0044	-	hypothetical protein
45	 32.76	-1	51728..52603	+	291	54296028	-	lpp0045	-	hypothetical protein
46	 35.68	0	52728..52940	-	70	54296029	-	lpp0046	-	hypothetical protein
47	 35.34	-1	53150..53548	+	132	54296030	-	lpp0047	-	hypothetical protein
48	 39.67	0	53747..54409	+	220	54296031	-	lpp0048	-	hypothetical protein
49	 40.05	0	54406..55284	+	292	54296032	-	lpp0049	-	hypothetical protein
50	 42.13	+1	55337..56632	+	431	54296033	-	lpp0050	-	hypothetical protein
51	 37.83	0	56714..57580	+	288	54296034	-	lpp0051	-	hypothetical protein
52	 38.15	0	57641..57889	-	82	54296035	-	lpp0052	-	hypothetical protein
53	 35.61	0	58034..58516	-	160	54296036	-	lpp0053	-	hypothetical protein
54	 42.73	+1	58729..59622	-	297	54296037	prpB	lpp0054	-	2-methylisocitrate lyase
55	 37.69	0	59931..60665	-	244	54296038	-	lpp0055	-	hypothetical protein
56	 36.61	0	60658..61359	-	233	54296039	-	lpp0056	-	hypothetical protein
57	 38.72	0	61465..62373	+	302	54296040	-	lpp0057	-	hypothetical protein
58	 40.56	0	62518..63237	+	239	54296041	-	lpp0058	-	hypothetical protein
59	 38.68	0	63273..63833	+	186	54296042	-	lpp0059	-	hypothetical protein
60	 34.57	-1	64139..64543	-	134	54296043	-	lpp0060	-	hypothetical protein
61	 38.71	0	64613..65356	+	247	54296044	-	lpp0061	-	hypothetical protein
62	 43.77	+1	65555..66646	+	363	54296045	-	lpp0062	-	hypothetical protein
63	 41.10	0	66766..66984	+	72	54296046	-	lpp0063	-	hypothetical protein
64	 38.54	0	67037..68341	-	434	54296047	hipA	lpp0064	-	HipA protein, DNA binding regulator
65	 31.67	-2	68335..68574	-	79	54296048	hipB	lpp0065	-	hypothetical protein
66	 38.80	0	69332..69697	+	121	54296049	-	lpp0067	-	hypothetical protein
67	 32.86	-1	69995..70840	-	281	54296050	-	lpp0068	-	hypothetical protein
68	 32.74	-1	71169..71336	-	55	54296051	-	lpp0069	-	hypothetical protein
69	 30.04	-2	71961..72902	+	313	54296052	-	lpp0070	-	hypothetical protein
70	 38.18	0	72941..73105	+	54	54296053	-	lpp0071	-	hypothetical protein
71	 42.10	+1	73331..74551	+	406	54296054	-	lpp0072	-	hypothetical protein
72	 39.51	0	74635..74958	+	107	54296055	-	lpp0073	-	hypothetical protein
73	 36.84	0	74955..75239	+	94	54296056	-	lpp0074	-	hypothetical protein
74	 39.81	0	75421..76254	+	277	54296057	-	lpp0075	-	hypothetical protein
75	 31.83	-2	76560..76958	+	132	54296058	-	lpp0076	-	hypothetical protein
76	 40.10	0	77084..80260	+	1058	54296059	-	lpp0077	-	hypothetical protein
77	 38.83	0	80253..81398	+	381	54296060	-	lpp0078	-	hypothetical protein
78	 42.36	+1	81395..82834	+	479	54296061	-	lpp0079	-	hypothetical protein
79	 43.37	+1	83095..83403	-	102	54296062	-	lpp0080	-	hypothetical protein
80	 41.35	0	83452..83688	-	78	54296063	-	lpp0081	-	hypothetical protein
81	 32.02	-2	83696..83923	-	75	54296064	-	lpp0082	-	hypothetical protein
82	 42.67	+1	84154..84903	+	249	54296065	-	lpp0083	-	hypothetical protein
83	 38.46	0	84891..85124	+	77	54296066	-	lpp0084	-	hypothetical protein
84	 45.89	+2	85457..86635	-	392	54296067	-	lpp0085	-	hypothetical protein
85	 42.82	+1	86682..88673	+	663	54296068	uvrB	lpp0086	-	excinuclease ABC subunit B
86	 36.56	0	89028..90641	+	537	54296069	-	lpp0087	-	hypothetical protein
87	 40.52	0	90733..92304	-	523	54296070	-	lpp0088	-	hypothetical protein
88	 30.16	-2	92382..92696	-	104	54296071	-	lpp0089	-	hypothetical protein
89	 41.07	0	92852..93433	+	193	54296072	-	lpp0090	-	hypothetical protein
90	 43.10	+1	93537..94847	+	436	54296073	pepP	lpp0091	-	hypothetical protein
91	 42.06	+1	94837..96039	+	400	54296074	ubiH	lpp0092	-	hypothetical protein
92	 42.44	+1	96036..97199	+	387	54296075	-	lpp0093	-	hypothetical protein
93	 37.76	0	97375..98142	+	255	54296076	-	lpp0094	-	hypothetical protein
94	 37.84	0	98132..99484	-	450	54296077	-	lpp0095	-	hypothetical protein
95	 40.31	0	99743..100201	+	152	54296078	-	lpp0096	-	hypothetical protein
96	 41.98	+1	100198..101145	-	315	54296079	-	lpp0097	-	hypothetical protein
97	 39.44	0	101142..102665	-	507	54296080	-	lpp0098	-	hypothetical protein
98	 37.50	0	102655..103182	-	175	54296081	-	lpp0099	-	hypothetical protein
99	 39.56	0	103432..105357	+	641	54296082	-	lpp0100	-	hypothetical protein
100	 37.90	0	105323..105913	-	196	54296083	-	lpp0101	-	hypothetical protein
38.73	MEAN

3.23	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.