IslandPath Analysis: Acidovorax avenae subsp. citrulli AAC00-1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 68.56   STD DEV: 4.93
Acidovorax avenae subsp. citrulli AAC00-1, complete genome - 1..5352772
4709 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 66.18	0	71..1498	+	475	120608715	-	Aave_0001	-	chromosomal replication initiator protein DnaA
2	 64.61	0	1658..2776	+	372	120608716	-	Aave_0002	-	DNA polymerase III, beta subunit
3	 66.97	0	2850..5483	+	877	120608717	-	Aave_0003	-	DNA gyrase subunit B
4	 61.28	-1	5603..7309	-	568	120608718	-	Aave_0004	-	putative transcriptional regulator
5	 62.78	-1	7309..7668	-	119	120608719	-	Aave_0005	-	putative type I restriction enzyme, R subunit
6	 62.54	-1	8660..9289	-	209	120608720	-	Aave_0007	-	DNA polymerase beta subunit
7	 70.63	0	9395..9823	+	142	120608721	-	Aave_0008	-	hypothetical protein
8	 66.89	0	9996..10433	+	145	120608722	-	Aave_0009	-	OsmC family protein
9	 75.10	+1	10504..10764	+	86	120608723	-	Aave_0010	-	4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
10	 73.66	+1	11029..12429	+	466	120608724	-	Aave_0011	-	homoserine dehydrogenase
11	 69.97	0	12460..12762	-	100	120608725	-	Aave_0012	-	hypothetical protein
12	 72.55	0	12900..15125	+	741	120608726	dinG	Aave_0013	-	ATP-dependent DNA helicase DinG
13	 63.25	-1	15295..15792	+	165	120608727	-	Aave_0014	-	putative general stress protein 26
14	 72.38	0	15831..16040	+	69	120608728	-	Aave_0015	-	hypothetical protein
15	 71.77	0	16085..16750	+	221	120608729	-	Aave_0016	-	DNA-directed DNA polymerase
16	 74.64	+1	16785..18113	-	442	120608730	-	Aave_0017	-	GntR family transcriptional regulator
17	 65.21	0	18322..18732	-	136	120608731	-	Aave_0018	-	hypothetical protein
18	 69.50	0	19177..20940	+	587	120608732	-	Aave_0019	-	2-isopropylmalate synthase
19	 73.33	0	21112..21666	+	184	120608733	-	Aave_0020	-	NLP/P60 protein
20	 69.73	0	21747..22889	+	380	120608734	-	Aave_0021	-	phospho-2-dehydro-3-deoxyheptonate aldolase
21	 69.76	0	23127..27626	+	1499	120608735	-	Aave_0022	-	diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
22	 67.18	0	28538..29122	-	194	120608736	-	Aave_0023	-	hypothetical protein
23	 72.87	0	29239..29802	-	187	120608737	-	Aave_0024	-	hypothetical protein
24	 67.97	0	30029..31024	+	331	120608738	rdgC	Aave_0025	-	recombination associated protein
25	 71.77	0	31079..32332	+	417	120608739	-	Aave_0026	-	nucleoside recognition domain-containing protein
26	 64.10	0	32339..32806	-	155	120608740	-	Aave_0027	-	putative secreted protein
27	 60.42	-1	32852..33187	+	111	120608741	-	Aave_0028	-	hypothetical protein
28	 72.57	0	33191..33715	-	174	120608742	-	Aave_0029	-	hypothetical protein
29	 62.60	-1	33751..34143	-	130	120608743	-	Aave_0030	-	hypothetical protein
30	 71.43	0	34220..35416	-	398	120608744	-	Aave_0031	-	beta-ketothiolase
31	 72.35	0	35531..35935	-	134	120608745	-	Aave_0032	-	MerR family transcriptional regulator
32	 68.18	0	36012..36209	-	65	120608746	-	Aave_0033	-	heavy metal transport/detoxification protein
33	 73.57	+1	36333..38636	+	767	120608747	-	Aave_0034	-	heavy metal translocating P-type ATPase
34	 68.63	0	38740..40416	+	558	120608748	-	Aave_0035	-	methyl-accepting chemotaxis sensory transducer
35	 54.05	-2	40520..40963	-	147	120608749	-	Aave_0036	-	hypothetical protein
36	 48.12	-2	40951..41694	-	247	120608750	-	Aave_0037	-	peptidoglycan-binding LysM
37	 68.25	0	41967..45053	-	1028	120608751	-	Aave_0038	-	CzcA family heavy metal efflux protein
38	 73.93	+1	45050..46261	-	403	120608752	-	Aave_0039	-	RND family efflux transporter MFP subunit
39	 76.69	+1	46334..47749	-	471	120608753	-	Aave_0040	-	outer membrane efflux protein
40	 71.57	0	47920..48633	+	237	120608754	-	Aave_0041	-	two component transcriptional regulator
41	 73.91	+1	48630..50078	+	482	120608755	-	Aave_0042	-	integral membrane sensor signal transduction histidine kinase
42	 63.52	-1	50075..50392	-	105	120608756	-	Aave_0043	-	NIPSNAP family protein
43	 68.77	0	53068..53877	+	269	120608757	-	Aave_0046	-	ABC transporter-related protein
44	 71.44	0	53864..54784	+	306	120608758	-	Aave_0047	-	binding-protein-dependent transport systems inner membrane component
45	 66.34	0	54822..55430	-	202	120608759	-	Aave_0048	-	glutathione S-transferase domain-containing protein
46	 73.48	0	55534..55797	-	87	120608760	-	Aave_0049	-	hypothetical protein
47	 71.13	0	55804..56385	-	193	120608761	-	Aave_0050	-	NADPH-dependent FMN reductase
48	 66.77	0	56675..58642	+	655	120608762	-	Aave_0051	-	tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
49	 68.58	0	58639..59370	+	243	120608763	-	Aave_0052	-	methyltransferase GidB
50	 69.59	0	59400..60014	+	204	120608764	-	Aave_0053	-	lysine exporter protein LysE/YggA
51	 65.89	0	60060..60830	+	256	120608765	-	Aave_0054	-	chromosome segregation ATPase
52	 73.55	+1	60845..61396	+	183	120608766	-	Aave_0055	-	hypothetical protein
53	 71.34	0	61426..62367	+	313	120608767	-	Aave_0056	-	chromosome segregation DNA-binding protein
54	 76.39	+1	62483..63469	-	328	120608768	-	Aave_0057	-	integral membrane protein
55	 69.68	0	63480..63911	-	143	120608769	-	Aave_0058	-	GtrA family protein
56	 68.87	0	63908..65269	-	453	120608770	-	Aave_0059	-	hypothetical protein
57	 66.67	0	65269..66210	-	313	120608771	-	Aave_0060	-	NAD-dependent epimerase/dehydratase
58	 69.84	0	66262..68028	-	588	120608772	-	Aave_0061	-	hypothetical protein
59	 74.64	+1	68041..68805	-	254	120608773	-	Aave_0062	-	short-chain dehydrogenase/reductase SDR
60	 71.56	0	68878..70185	-	435	120608774	-	Aave_0063	-	FAD linked oxidase domain-containing protein
61	 72.04	0	70179..71648	-	489	120608775	-	Aave_0064	-	hypothetical protein
62	 75.37	+1	71792..72607	+	271	120608776	-	Aave_0065	-	methyltransferase type 12
63	 71.76	0	72723..73763	+	346	120608777	-	Aave_0066	-	peptidoglycan binding domain-containing protein
64	 68.52	0	73816..75756	-	646	120608778	-	Aave_0067	-	carboxylesterase, type B
65	 72.22	0	76275..77156	+	293	120608779	-	Aave_0068	-	precorrin-4 C11-methyltransferase
66	 71.25	0	78256..78975	+	239	120608780	-	Aave_0070	-	precorrin-8X methylmutase
67	 72.25	0	78983..80110	+	375	120608781	cbiD	Aave_0071	-	cobalt-precorrin-6A synthase
68	 72.62	0	80113..81456	+	447	120608782	-	Aave_0072	-	precorrin-6Y C5,15-methyltransferase (decarboxylating)
69	 71.00	0	81453..82352	+	299	120608783	-	Aave_0073	-	cobalt-factor II C20-methyltransferase / precorrin-2 C20-methyltransferase
70	 72.22	0	82349..83140	+	263	120608784	-	Aave_0074	-	cobalamin (vitamin B12) biosynthesis CbiG protein
71	 74.95	+1	83137..83595	+	152	120608785	-	Aave_0075	-	cobalamin (vitamin B12) biosynthesis CbiG protein
72	 69.96	0	83651..84319	+	222	120608786	-	Aave_0076	-	hypothetical protein
73	 70.40	0	84365..85354	+	329	120608787	-	Aave_0077	-	precorrin-3B C17-methyltransferase
74	 70.23	0	85351..85743	+	130	120608788	-	Aave_0078	-	hypothetical protein
75	 72.17	0	85837..86145	-	102	120608789	-	Aave_0079	-	hypothetical protein
76	 68.04	0	86162..86380	-	72	120608790	-	Aave_0080	-	hypothetical protein
77	 70.48	0	86503..87132	-	209	120608791	-	Aave_0081	-	hypothetical protein
78	 73.55	+1	87190..88104	-	304	120608792	-	Aave_0082	-	AraC family transcriptional regulator
79	 72.25	0	88169..89440	+	423	120608793	-	Aave_0083	-	major facilitator superfamily transporter
80	 76.22	+1	89484..90404	+	306	120608794	-	Aave_0084	-	hypothetical protein
81	 63.84	0	91292..91858	+	188	120608795	-	Aave_0085	-	peptidase
82	 66.91	0	92460..92864	-	134	120608796	-	Aave_0086	-	hypothetical protein
83	 69.59	0	93019..93462	-	147	120608797	-	Aave_0087	-	hypothetical protein
84	 70.44	0	93500..94108	-	202	120608798	-	Aave_0088	-	isoprenylcysteine carboxyl methyltransferase
85	 61.88	-1	94453..94953	-	166	120608799	-	Aave_0089	-	hypothetical protein
86	 68.52	0	95203..95526	-	107	120608800	-	Aave_0090	-	hypothetical protein
87	 65.19	0	97864..98676	-	270	120608801	-	Aave_0091	-	transposase, IS4 family protein
88	 64.18	0	99449..99970	+	173	120608802	-	Aave_0093	-	transposase, IS4 family protein
89	 58.95	-1	99984..100307	-	107	120608803	-	Aave_0094	-	YCII-related protein
90	 69.40	0	100304..101728	-	474	120608804	-	Aave_0095	-	FAD linked oxidase domain-containing protein
91	 69.84	0	102010..102450	-	146	120608805	-	Aave_0096	-	hypothetical protein
92	 68.42	0	102629..103027	-	132	120608806	-	Aave_0097	-	calcium-binding EF-hand-containing protein
93	 72.53	0	103185..103781	+	198	120608807	-	Aave_0098	-	ATP:cob(I)alamin adenosyltransferase
94	 70.92	0	103867..104289	-	140	120608808	-	Aave_0099	-	hypothetical protein
95	 69.62	0	104393..105916	-	507	120608809	-	Aave_0100	-	Acetyl-CoA hydrolase
96	 73.00	0	106089..106814	+	241	120608810	-	Aave_0101	-	hypothetical protein
97	 69.12	0	106832..108133	-	433	120608811	-	Aave_0102	-	uracil-xanthine permease
98	 75.33	+1	108395..109768	+	457	120608812	-	Aave_0103	-	hypothetical protein
99	 70.63	0	109823..111691	-	622	120608813	-	Aave_0104	-	methyl-accepting chemotaxis sensory transducer
100	 68.86	0	111851..113761	-	636	120608814	-	Aave_0105	-	radical SAM domain-containing protein
68.56	MEAN

4.93	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.