IslandPath Analysis: Salinispora tropica CNB-440



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 69.44   STD DEV: 3.32
Salinispora tropica CNB-440, complete genome - 1..5183331
4536 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 68.93	0	625..2388	+	587	145592567	-	Strop_0001	-	chromosomal replication initiator protein DnaA
2	 64.12	-1	2372..2842	-	156	145592568	-	Strop_0002	-	hypothetical protein
3	 69.84	0	3151..4284	+	377	145592569	-	Strop_0003	-	DNA polymerase III, beta subunit
4	 68.61	0	4325..5197	+	290	145592570	-	Strop_0004	-	6-phosphogluconate dehydrogenase-like protein
5	 73.10	+1	5214..6347	+	377	145592571	recF	Strop_0005	-	recombination protein F
6	 76.55	+2	6337..6933	+	198	145592572	-	Strop_0006	-	hypothetical protein
7	 69.76	0	6924..7505	-	193	145592573	-	Strop_0007	-	hypothetical protein
8	 65.37	-1	7788..9947	+	719	145592574	-	Strop_0008	-	DNA gyrase, B subunit
9	 66.51	0	10079..12598	+	839	145592575	-	Strop_0009	-	DNA gyrase subunit A
10	 72.17	0	12603..13529	+	308	145592576	-	Strop_0010	-	hypothetical protein
11	 66.12	-1	13951..14319	+	122	145592577	-	Strop_0011	-	glyoxalase/bleomycin resistance protein/dioxygenase
12	 63.57	-1	14462..14590	+	42	145592578	-	Strop_0012	-	hypothetical protein
13	 68.24	0	14928..15371	+	147	145592579	-	Strop_0013	-	hypothetical protein
14	 71.97	0	15519..16367	+	282	145592580	-	Strop_0014	-	phenazine biosynthesis PhzC/PhzF protein
15	 68.95	0	16502..19084	-	860	145592581	valS	Strop_0015	-	valyl-tRNA synthetase
16	 73.15	+1	19204..20175	+	323	145592582	-	Strop_0016	-	Sua5/YciO/YrdC/YwlC family protein
17	 74.12	+1	20241..24707	-	1488	145592583	-	Strop_0017	-	ATPase, P-type (transporting), HAD superfamily, subfamily IC
18	 65.02	-1	24882..25184	+	100	145592584	-	Strop_0018	-	hypothetical protein
19	 65.64	-1	25315..25509	+	64	145592585	-	Strop_0019	-	hypothetical protein
20	 71.23	0	25585..26220	-	211	145592586	-	Strop_0020	-	DSBA oxidoreductase
21	 69.93	0	26241..26669	-	142	145592587	-	Strop_0021	-	Fe-S metabolism associated SufE
22	 67.61	0	26826..27251	-	141	145592588	-	Strop_0022	-	signal-transduction protein
23	 68.85	0	27489..28268	+	259	145592589	-	Strop_0023	-	GDSL family lipase
24	 71.31	0	28458..29039	+	193	145592590	-	Strop_0024	-	TetR family transcriptional regulator
25	 69.51	0	29166..30503	+	445	145592591	-	Strop_0025	-	carbamoyl-phosphate synthase L chain, ATP-binding
26	 70.07	0	30748..31659	+	303	145592592	-	Strop_0026	-	pyruvate carboxyltransferase
27	 68.04	0	31857..33389	+	510	145592593	-	Strop_0027	-	propionyl-CoA carboxylase
28	 67.36	0	33452..34606	+	384	145592594	-	Strop_0028	-	acyl-CoA dehydrogenase domain-containing protein
29	 73.33	+1	34731..37298	+	855	145592595	-	Strop_0029	-	helix-turn-helix domain-containing protein
30	 65.95	-1	37565..38266	-	233	145592596	-	Strop_0030	-	MarR family transcriptional regulator
31	 67.48	0	38287..39765	+	492	145592597	-	Strop_0031	-	hypothetical protein
32	 72.43	0	39799..41100	-	433	145592598	-	Strop_0032	-	hypothetical protein
33	 72.11	0	41282..42034	+	250	145592599	-	Strop_0033	-	PASTA domain-containing protein
34	 67.28	0	42091..42414	-	107	145592600	-	Strop_0034	-	hypothetical protein
35	 67.81	0	42518..43129	-	203	145592601	-	Strop_0035	-	hypothetical protein
36	 63.15	-1	43227..44108	+	293	145592602	-	Strop_0036	-	helix-turn-helix domain-containing protein
37	 68.47	0	44078..44299	+	73	145592603	-	Strop_0037	-	hypothetical protein
38	 65.71	-1	44651..44965	+	104	145592604	-	Strop_0038	-	hypothetical protein
39	 67.76	0	45230..46789	+	519	145592605	-	Strop_0039	-	peptidase S8 and S53, subtilisin, kexin, sedolisin
40	 70.26	0	46860..47666	-	268	145592606	-	Strop_0040	-	WecB/TagA/CpsF family glycosyl transferase
41	 64.90	-1	47663..48736	-	357	145592607	-	Strop_0041	-	NAD-dependent epimerase/dehydratase
42	 69.84	0	49150..49938	+	262	145592608	-	Strop_0042	-	FHA domain-containing protein
43	 67.90	0	49945..50430	+	161	145592609	-	Strop_0043	-	FHA domain-containing protein
44	 70.12	0	50427..51875	+	482	145592610	-	Strop_0044	-	protein phosphatase 2C domain-containing protein
45	 68.28	0	51904..53394	+	496	145592611	-	Strop_0045	-	cell cycle protein
46	 68.86	0	53391..54896	+	501	145592612	-	Strop_0046	-	peptidoglycan glycosyltransferase
47	 71.27	0	54898..56286	+	462	145592613	-	Strop_0047	-	protein kinase
48	 69.78	0	56283..58112	+	609	145592614	-	Strop_0048	-	protein kinase
49	 68.97	0	58209..58859	-	216	145592615	-	Strop_0049	-	para-aminobenzoate synthase component II
50	 68.38	0	58865..59155	-	96	145592616	-	Strop_0050	-	hypothetical protein
51	 73.37	+1	59160..60725	-	521	145592617	-	Strop_0051	-	sortase family protein
52	 68.39	0	60722..61651	-	309	145592618	-	Strop_0052	-	hypothetical protein
53	 65.69	-1	61674..61979	+	101	145592619	-	Strop_0053	-	hypothetical protein
54	 67.21	0	62287..64485	+	732	145592620	-	Strop_0054	-	hypothetical protein
55	 65.78	-1	64800..65813	+	337	145592621	-	Strop_0055	-	NLP/P60 protein
56	 67.18	0	65961..66539	-	192	145592622	dcd	Strop_0056	-	deoxycytidine triphosphate deaminase
57	 70.60	0	66617..67150	+	177	145592623	-	Strop_0057	-	pyridoxamine 5'-phosphate oxidase-related, FMN-binding
58	 67.09	0	67688..68875	-	395	145592624	-	Strop_0058	-	phage integrase family protein
59	 65.50	-1	68878..69135	-	85	145592625	-	Strop_0059	-	DNA binding domain-containing protein
60	 69.11	0	69373..70479	-	368	145592626	-	Strop_0060	-	hypothetical protein
61	 68.50	0	70484..71194	-	236	145592627	-	Strop_0061	-	C-5 cytosine-specific DNA methylase
62	 72.62	0	71191..72366	-	391	145592628	-	Strop_0062	-	hypothetical protein
63	 70.43	0	72707..74860	-	717	145592629	-	Strop_0063	-	hypothetical protein
64	 72.33	0	74857..76410	-	517	145592630	-	Strop_0064	-	hypothetical protein
65	 67.66	0	76407..76607	-	66	145592631	-	Strop_0065	-	hypothetical protein
66	 71.23	0	76609..77112	-	167	145592632	-	Strop_0066	-	hypothetical protein
67	 69.96	0	77206..78267	-	353	145592633	-	Strop_0067	-	hypothetical protein
68	 64.74	-1	78264..78575	-	103	145592634	-	Strop_0068	-	hypothetical protein
69	 73.27	+1	78664..79329	-	221	145592635	-	Strop_0069	-	NUDIX hydrolase
70	 70.37	0	79326..79703	-	125	145592636	-	Strop_0070	-	hypothetical protein
71	 69.05	0	79700..79951	-	83	145592637	-	Strop_0071	-	hypothetical protein
72	 65.28	-1	80381..81247	+	288	145592638	-	Strop_0072	-	regulatory protein GntR, HTH
73	 71.49	0	81244..81948	+	234	145592639	-	Strop_0073	-	HAD family hydrolase
74	 69.21	0	82600..82953	-	117	145592640	-	Strop_0074	-	hypothetical protein
75	 63.23	-1	83109..83399	-	96	145592641	-	Strop_0075	-	hypothetical protein
76	 70.39	0	83609..84655	-	348	145592642	-	Strop_0076	-	hypothetical protein
77	 67.47	0	84655..85152	-	165	145592643	-	Strop_0077	-	ECF subfamily RNA polymerase sigma-24 factor
78	 68.35	0	85513..86937	-	474	145592644	-	Strop_0078	-	aldehyde dehydrogenase
79	 62.73	-2	87100..87633	-	177	145592645	-	Strop_0079	-	hypothetical protein
80	 62.68	-2	87657..88007	-	116	145592646	-	Strop_0080	-	hypothetical protein
81	 62.39	-2	88254..89795	+	513	145592647	-	Strop_0081	-	amidohydrolase
82	 68.74	0	90293..90871	-	192	145592648	-	Strop_0082	-	GCN5-related N-acetyltransferase
83	 66.67	0	91285..92154	-	289	145592649	-	Strop_0083	-	alpha/beta hydrolase fold
84	 66.46	0	92818..93297	+	159	145592650	-	Strop_0084	-	GCN5-related N-acetyltransferase
85	 71.04	0	93366..94256	+	296	145592651	-	Strop_0085	-	luciferase family protein
86	 72.55	0	94348..94908	-	186	145592652	-	Strop_0086	-	phosphoribosyltransferase
87	 69.42	0	95005..95730	+	241	145592653	-	Strop_0087	-	rare lipoprotein A
88	 70.74	0	95829..96956	+	375	145592654	-	Strop_0088	-	stage II sporulation E family protein
89	 67.75	0	97039..98892	+	617	145592655	-	Strop_0089	-	acyl-CoA dehydrogenase domain-containing protein
90	 68.15	0	99117..99386	+	89	145592656	-	Strop_0090	-	hypothetical protein
91	 72.44	0	99421..99957	-	178	145592657	-	Strop_0091	-	putative phosphohistidine phosphatase, SixA
92	 67.20	0	100075..101013	-	312	145592658	-	Strop_0092	-	AraC family transcriptional regulator
93	 70.00	0	101108..101827	+	239	145592659	-	Strop_0093	-	ThiJ/PfpI domain-containing protein
94	 66.88	0	101824..102300	+	158	145592660	-	Strop_0094	-	hypothetical protein
95	 68.09	0	102297..102578	+	93	145592661	-	Strop_0095	-	hypothetical protein
96	 69.17	0	102658..103335	-	225	145592662	-	Strop_0096	-	hemolysin III family channel protein
97	 74.90	+1	103387..104163	+	258	145592663	-	Strop_0097	-	allophanate hydrolase subunit 1
98	 74.23	+1	104160..105098	+	312	145592664	-	Strop_0098	-	urea amidolyase related protein
99	 72.27	0	105082..105849	+	255	145592665	-	Strop_0099	-	LamB/YcsF family protein
100	 72.05	0	105874..107712	-	612	145592666	-	Strop_0100	-	alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen
69.44	MEAN

3.32	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.