IslandPath Analysis: Xanthomonas campestris pv. campestris str. 8004



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 65.18   STD DEV: 4.26
Xanthomonas campestris pv. campestris str. 8004, complete genome - 1..5148708
4273 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 65.61	0	42..1370	+	442	66766353	dnaA	XC_0001	-	chromosomal replication initiation protein
2	 64.58	0	1646..2746	+	366	66766354	-	XC_0002	-	DNA polymerase III subunit beta
3	 65.49	0	3633..4739	+	368	66766355	recF	XC_0003	-	recombination protein F
4	 64.99	0	4853..7297	+	814	66766356	gyrB	XC_0004	-	DNA gyrase subunit B
5	 67.85	0	7359..8201	+	280	66766357	-	XC_0005	-	hypothetical protein
6	 65.92	0	8264..9070	+	268	66766358	-	XC_0006	-	hypothetical protein
7	 62.32	0	9209..10405	+	398	66766359	-	XC_0007	-	hypothetical protein
8	 63.69	0	10559..11230	+	223	66766360	-	XC_0008	-	TonB protein
9	 63.78	0	11315..12076	+	253	66766361	-	XC_0009	-	biopolymer transport ExbB protein
10	 60.28	-1	12123..12545	+	140	66766362	-	XC_0010	-	biopolymer transport ExbD1 protein
11	 60.58	-1	12549..12959	+	136	66766363	-	XC_0011	-	biopolymer transport ExbD2 protein
12	 67.32	0	14113..14883	-	256	66766364	-	XC_0012	-	pyridoxal phosphate biosynthetic protein PdxJ
13	 67.78	0	14891..15160	-	89	66766365	-	XC_0013	-	hypothetical protein
14	 66.26	0	15235..16695	-	486	66766366	-	XC_0014	-	cardiolipin synthetase
15	 68.95	0	16981..18075	+	364	66766367	-	XC_0015	-	hypothetical protein
16	 66.10	0	18170..18871	-	233	77761059	-	XC_0016	-	hypothetical protein
17	 66.82	0	19513..20853	-	446	66766369	-	XC_0017	-	outer membrane protein
18	 67.68	0	21073..21765	+	230	66766370	-	XC_0018	-	hypothetical protein
19	 61.37	0	21794..22114	+	106	66766371	-	XC_0019	-	hypothetical protein
20	 69.30	0	22114..23100	+	328	66766372	-	XC_0020	-	D-3-phosphoglycerate dehydrogenase
21	 67.87	0	24035..25615	-	526	66766373	-	XC_0021	-	carboxyl-terminal protease
22	 68.72	0	25780..26997	-	405	66766374	-	XC_0022	-	hypothetical protein
23	 65.30	0	27168..27824	+	218	66766375	-	XC_0023	-	hypothetical protein
24	 68.40	0	27883..29667	+	594	66766376	-	XC_0024	-	hypothetical protein
25	 62.04	0	30028..30459	-	143	66766377	-	XC_0025	-	hypothetical protein
26	 59.90	-1	30892..31941	-	349	66766378	-	XC_0026	-	cellulase
27	 61.25	0	32350..33402	-	350	66766379	-	XC_0027	-	cellulase
28	 63.38	0	34033..35097	-	354	66766380	-	XC_0028	-	cellulase
29	 64.21	0	35411..36469	+	352	66766381	-	XC_0029	-	alcohol dehydrogenase
30	 50.49	-2	37450..37956	-	168	66766382	-	XC_0030	-	hypothetical protein
31	 68.49	0	38001..39482	-	493	66766383	gltD	XC_0031	-	glutamate synthase subunit beta
32	 67.18	0	39604..44076	-	1490	66766384	gltB	XC_0032	-	glutamate synthase subunit alpha
33	 65.48	0	44279..44701	-	140	66766385	-	XC_0033	-	hypothetical protein
34	 66.75	0	44887..46071	+	394	66766386	-	XC_0034	-	hypothetical protein
35	 62.87	0	46187..46765	-	192	66766387	-	XC_0035	-	phospholipid N-methyltransferase
36	 69.00	0	47690..48160	-	156	66766388	-	XC_0036	-	hypothetical protein
37	 71.58	+1	48631..49464	+	277	66766389	-	XC_0037	-	pirin
38	 67.77	0	50747..51649	-	300	66766390	-	XC_0040	-	LysR family transcriptional regulator
39	 68.30	0	51940..52245	-	101	66766391	-	XC_0041	-	hypothetical protein
40	 67.40	0	52242..52919	-	225	66766392	-	XC_0042	-	NonF-related protein
41	 68.13	0	53054..53944	+	296	66766393	-	XC_0043	-	transcriptional regulator
42	 64.21	0	53982..54551	-	189	66766394	-	XC_0044	-	transcriptional regulator
43	 66.93	0	54812..55198	+	128	66766395	-	XC_0045	-	methicillin resistance protein
44	 68.30	0	55202..56914	+	570	66766396	-	XC_0046	-	ankyrin-like protein
45	 68.31	0	57441..58292	+	283	66766397	-	XC_0047	-	hypothetical protein
46	 67.73	0	58534..59664	+	376	66766398	-	XC_0048	-	hypothetical protein
47	 67.30	0	60083..60871	-	262	66766399	-	XC_0049	-	hypothetical protein
48	 68.77	0	60882..63446	-	854	77761060	-	XC_0050	-	TonB-dependent receptor
49	 70.38	+1	63651..64808	+	385	66766401	-	XC_0051	-	xylose repressor-like protein
50	 67.83	0	64947..67103	+	718	66766402	-	XC_0052	-	avirulence protein
51	 70.76	+1	67288..68778	-	496	77761061	-	XC_0053	-	hypothetical protein
52	 67.41	0	68775..71183	-	802	66766404	-	XC_0054	-	ATP-dependent RNA helicase
53	 65.27	0	71493..72641	-	382	66766405	-	XC_0055	-	hypothetical protein
54	 67.58	0	72929..73585	+	218	77761062	-	XC_0056	-	hemolysin III
55	 62.58	0	73652..73969	-	105	66766407	-	XC_0057	-	hypothetical protein
56	 64.55	0	73966..74343	-	125	66766408	-	XC_0058	-	hypothetical protein
57	 62.87	0	74669..75379	-	236	66766409	-	XC_0059	-	hypothetical protein
58	 63.58	0	75551..76069	-	172	66766410	-	XC_0060	-	NAD(P)H oxidoreductase
59	 64.91	0	76036..76377	-	113	66766411	-	XC_0061	-	hypothetical protein
60	 65.24	0	76468..76818	+	116	66766412	-	XC_0062	-	hypothetical protein
61	 47.57	-2	77346..78434	+	362	66766413	-	XC_0063	-	regulatory protein cII
62	 64.91	0	79468..79638	+	56	66766414	-	XC_0064	-	hypothetical protein
63	 56.90	-1	79829..80668	-	279	66766415	-	XC_0065	-	hypothetical protein
64	 58.78	-1	81391..82797	-	468	77761063	-	XC_0066	-	hypothetical protein
65	 58.75	-1	82836..83606	-	256	66766417	-	XC_0067	-	hypothetical protein
66	 66.28	0	83613..83870	-	85	66766418	-	XC_0068	-	hypothetical protein
67	 64.58	0	84234..84473	-	79	66766419	-	XC_0069	-	hypothetical protein
68	 66.83	0	84760..85386	+	208	66766420	-	XC_0070	-	hypothetical protein
69	 62.43	0	85784..85972	-	62	66766421	-	XC_0071	-	hypothetical protein
70	 65.15	0	86107..86304	-	65	66766422	-	XC_0072	-	transcriptional regulator
71	 63.31	0	86815..87768	+	317	66766423	-	XC_0073	-	hypothetical protein
72	 72.88	+1	87912..88829	-	305	77761064	-	XC_0074	-	hypothetical protein
73	 66.89	0	89197..89637	+	146	77761065	-	XC_0075	-	hypothetical protein
74	 68.59	0	90510..90821	-	103	66766426	-	XC_0076	-	hypothetical protein
75	 69.08	0	90818..91894	-	358	66766427	-	XC_0077	-	metalloprotease
76	 70.02	+1	91994..92650	-	218	66766428	-	XC_0078	-	hypothetical protein
77	 67.13	0	92883..93317	+	144	66766429	-	XC_0079	-	MutT/nudix family protein
78	 67.34	0	93805..94845	+	346	66766430	-	XC_0080	-	hypothetical protein
79	 67.98	0	95190..96179	+	329	66766431	-	XC_0081	-	esterase
80	 63.41	0	96285..96683	+	132	66766432	-	XC_0082	-	AtsE protein
81	 66.07	0	96699..97031	+	110	66766433	-	XC_0083	-	thioredoxin
82	 65.33	0	97848..99338	+	496	66766434	-	XC_0084	-	proline/betaine transporter
83	 69.59	+1	99354..99764	-	136	66766435	-	XC_0085	-	hypothetical protein
84	 70.44	+1	99984..100778	+	264	66766436	-	XC_0086	-	hypothetical protein
85	 67.29	0	100975..101613	+	212	66766437	-	XC_0087	-	hypothetical protein
86	 75.44	+2	101691..103445	-	584	66766438	-	XC_0088	-	hypothetical protein
87	 74.52	+2	103594..105936	-	780	66766439	-	XC_0089	-	hypothetical protein
88	 75.80	+2	105855..107036	-	393	66766440	-	XC_0090	-	hypothetical protein
89	 73.47	+1	107185..108081	-	298	66766441	-	XC_0091	-	hypothetical protein
90	 68.48	0	108095..109087	-	330	66766442	-	XC_0092	-	methanol dehydrogenase regulator
91	 61.07	0	109374..110195	-	273	77761066	-	XC_0093	-	hypothetical protein
92	 63.22	0	110192..111526	-	444	66766444	-	XC_0094	-	TldD protein
93	 63.74	0	111541..113217	-	558	66766445	-	XC_0096	-	TldD protein
94	 64.71	0	114024..115604	-	526	66766446	-	XC_0097	-	TldD protein
95	 65.59	0	116642..117658	-	338	66766447	-	XC_0098	-	fructose-1,6-bisphosphatase
96	 62.16	0	117710..117820	-	36	66766448	-	XC_0099	-	hypothetical protein
97	 67.33	0	117835..119037	-	400	66766449	-	XC_0100	-	aromatic amino acid aminotransferase
98	 69.69	+1	119138..121321	+	727	66766450	-	XC_0101	-	iron transporter
99	 63.64	0	121489..121884	+	131	66766451	-	XC_0102	-	hypothetical protein
100	 67.09	0	122249..122725	+	158	66766452	-	XC_0103	-	hypothetical protein
65.18	MEAN

4.26	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.