IslandPath Analysis: Methanosarcina acetivorans C2A



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 44.25   STD DEV: 5.60
Methanosarcina acetivorans C2A, complete genome - 1..5751492
4540 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 45.53	0	266..1528	-	420	20088900	cdc6	MA0001	-	cell division control protein 6
2	 31.48	-2	3358..3735	-	125	20088901	-	MA0002	-	hypothetical protein
3	 42.91	0	3805..5349	+	514	20088902	-	MA0003	-	sodium:proline symporter
4	 38.37	-1	7361..8134	-	257	20088903	istB	MA0004	-	IstB helper protein
5	 41.37	0	8131..9375	-	414	20088904	-	MA0005	-	transposase
6	 45.37	0	9571..10758	+	395	20088905	-	MA0006	-	L-tyrosine decarboxylase
7	 44.75	0	11359..12453	+	364	20088906	-	MA0007	-	hypothetical protein
8	 46.95	0	13031..14572	+	513	20088907	traB	MA0008	-	TraB family protein
9	 40.74	0	14788..15084	-	98	20088908	-	MA0009	-	hypothetical protein
10	 47.65	0	15444..16337	-	297	20088909	ftr	MA0010	-	tetrahydromethanopterin formyltransferase
11	 41.67	0	17080..17559	-	159	20088910	cheD2	MA0011	-	chemoreceptor glutamine deamidase CheD
12	 38.12	-1	17684..18310	-	208	20088911	cheC2	MA0012	-	chemotaxis protein CheC
13	 37.16	-1	18403..19551	-	382	20088912	cheR	MA0013	-	cheR methyltransferase
14	 41.93	0	19622..21529	-	635	20088913	cheA2	MA0014	-	chemotaxis sensor histidine kinase
15	 47.99	0	21713..22783	-	356	20088914	cheB2	MA0015	-	chemotaxis protein-glutamate methylesterase
16	 40.66	0	23127..23522	-	131	20088915	cheY2	MA0016	-	chemotaxis response regulator
17	 24.17	-2	24606..25085	-	159	20088916	dyhC	MA0017	-	dynein heavy chain
18	 41.99	0	25197..25577	+	126	20088917	-	MA0018	-	response regulator receiver
19	 43.87	0	25764..27983	+	739	20088918	mcp-2	MA0019	-	methyl-accepting chemotaxis protein
20	 43.78	0	28098..28652	+	184	20088919	cheW2	MA0020	-	chemotaxis signal transduction coupling protein
21	 45.99	0	28662..30131	+	489	20088920	-	MA0021	-	high-affinity gluconate transporter (gluconate permease)
22	 41.62	0	30217..30723	+	168	20088921	-	MA0022	-	iron dependent repressor
23	 43.74	0	31065..32102	+	345	20088922	znuA	MA0023	-	zinc ABC transporter, solute-binding lipoprotein
24	 49.67	0	32254..33018	+	254	20088923	znuC	MA0024	-	zinc ABC transporter, ATP-binding protein
25	 46.30	0	33066..33890	+	274	20088924	znuB	MA0025	-	zinc ABC transporter, permease protein
26	 42.98	0	34650..35105	+	151	20088925	-	MA0026	-	hypothetical protein
27	 34.50	-1	35473..36759	+	428	20088926	-	MA0027	-	hypothetical protein
28	 31.03	-2	37138..37572	-	144	20088927	-	MA0028	-	hypothetical protein
29	 45.67	0	37882..39162	-	426	20088928	-	MA0029	-	hypothetical protein
30	 45.34	0	40272..41054	-	260	20088929	-	MA0030	-	hypothetical protein
31	 54.43	+1	41309..42199	-	296	20088930	porB	MA0031	-	pyruvate synthase, subunit beta
32	 51.90	+1	42196..43407	-	403	20088931	porA	MA0032	-	pyruvate synthase, subunit alpha
33	 44.44	0	43407..43667	-	86	20088932	porD	MA0033	-	pyruvate synthase, subunit delta
34	 48.45	0	43664..44212	-	182	20088933	porG	MA0034	-	pyruvate ferredoxin oxidoreductase subunit gamma
35	 46.40	0	44772..45743	-	323	20088934	-	MA0035	-	hypothetical protein
36	 45.88	0	46129..46686	-	185	20088935	sec11	MA0036	-	signal sequence peptidase
37	 48.39	0	47306..49258	+	650	20088936	-	MA0037	-	DNA polymerase II small subunit
38	 41.44	0	49629..50060	+	143	20088937	-	MA0038	-	hypothetical protein
39	 40.18	0	50047..50922	+	291	20088938	-	MA0039	-	hypothetical protein
40	 49.13	0	51146..52183	+	345	20088939	-	MA0040	-	tRNA-modifying enzyme
41	 43.37	0	52548..52826	-	92	20088940	-	MA0041	-	hypothetical protein
42	 49.84	0	53371..54618	+	415	20088941	erf1	MA0042	-	peptide chain release factor 1
43	 50.94	+1	54809..56512	+	567	20088942	argS	MA0043	-	arginyl-tRNA synthetase
44	 34.67	-1	56493..56717	+	74	20088943	-	MA0044	-	hypothetical protein
45	 41.98	0	56925..57329	+	134	20088944	-	MA0045	-	hypothetical protein
46	 44.68	0	57569..58264	+	231	20088945	-	MA0046	-	hypothetical protein
47	 45.85	0	58313..59023	+	236	20088946	-	MA0047	-	hypothetical protein
48	 42.67	0	59191..59415	+	74	20088947	-	MA0048	-	hypothetical protein
49	 48.41	0	59484..59735	+	83	20088948	-	MA0049	-	hypothetical protein
50	 47.20	0	59888..61279	+	463	20088949	-	MA0050	-	hypothetical protein
51	 40.55	0	61555..63327	-	590	20088950	-	MA0051	-	hypothetical protein
52	 35.00	-1	63628..63927	+	99	20088951	-	MA0052	-	hypothetical protein
53	 46.26	0	64281..65324	+	347	20088952	-	MA0053	-	5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase
54	 46.28	0	65547..66581	+	344	20088953	-	MA0054	-	5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase
55	 43.86	0	67212..67382	-	56	20088954	-	MA0055	-	hypothetical protein
56	 44.44	0	68394..68609	+	71	20088955	-	MA0056	-	hypothetical protein
57	 45.37	0	68667..68882	+	71	20088956	-	MA0057	-	hypothetical protein
58	 48.15	0	68941..69156	+	71	20088957	-	MA0058	-	hypothetical protein
59	 46.76	0	69205..69420	+	71	20088958	-	MA0059	-	hypothetical protein
60	 38.02	-1	69654..70379	-	241	20088959	-	MA0060	-	hypothetical protein
61	 42.01	0	70391..71347	-	318	20088960	-	MA0061	-	hypothetical protein
62	 47.65	0	71483..71908	+	141	20088961	-	MA0062	-	hypothetical protein
63	 46.96	0	72017..72823	-	268	20088962	ssuB	MA0063	-	sulfonate ABC transporter, ATP-binding protein
64	 44.11	0	72783..73571	-	262	20088963	ssuC	MA0064	-	sulfonate ABC transporter, permease protein
65	 48.03	0	73710..74723	-	337	20088964	ssuA	MA0065	-	sulfonate ABC transporter, solute-binding protein
66	 33.33	-1	74811..75035	-	74	20088965	-	MA0066	-	hypothetical protein
67	 45.02	0	75144..75665	+	173	20088966	-	MA0067	-	hypothetical protein
68	 45.38	0	75866..79369	-	1167	20088967	-	MA0068	-	hypothetical protein
69	 49.46	0	79587..80603	-	338	20088968	hypE	MA0069	-	hydrogenase expression/formation protein
70	 38.22	-1	80707..80931	+	74	20088969	-	MA0070	-	hypothetical protein
71	 46.16	0	81193..81987	-	264	20088970	-	MA0071	-	radical activating enzyme
72	 48.39	0	82020..84404	-	794	20088971	nrdD	MA0072	-	anaerobic ribonucleoside-triphosphate reductase
73	 41.32	0	84671..85033	+	120	20088972	-	MA0073	-	hypothetical protein
74	 45.77	0	85394..86197	+	267	20088973	radB	MA0074	-	DNA repair and recombination protein RadB
75	 46.50	0	86407..87507	-	366	20088974	-	MA0075	-	myo-inositol-1-phosphate synthase
76	 49.09	0	88156..89202	+	348	20088975	eif2B1	MA0076	-	translation initiation factor IF-2B subunit alpha
77	 50.29	+1	89765..90631	+	288	20088976	-	MA0077	-	hypothetical protein
78	 33.84	-1	90829..92013	+	394	20088977	-	MA0078	-	hypothetical protein
79	 33.77	-1	91916..94453	+	845	20088978	-	MA0079	-	hypothetical protein
80	 49.81	0	94605..96728	+	707	20088979	-	MA0080	-	hypothetical protein
81	 48.59	0	97659..99749	+	696	20088980	ppk	MA0081	-	polyphosphate kinase
82	 34.76	-1	99815..100024	+	69	20088981	-	MA0082	-	hypothetical protein
83	 48.47	0	100217..101848	+	543	20088982	ppx	MA0083	-	exopolyphosphatase
84	 45.33	0	101895..104570	-	891	20088983	-	MA0084	-	hypothetical protein
85	 48.84	0	105273..106394	+	373	20088984	cdc6	MA0085	-	cell division control protein 6
86	 51.78	+1	106733..108391	-	552	20088985	hsp60-1	MA0086	-	Hsp60
87	 45.25	0	109117..110610	+	497	20088986	-	MA0087	-	DnaK protein
88	 43.82	0	110727..111479	+	250	20088987	-	MA0088	-	DnaJ protein
89	 45.72	0	111532..112209	-	225	20088988	-	MA0089	-	hypothetical protein
90	 51.05	+1	112231..113850	-	539	20088989	pheRS	MA0090	-	O-phosphoseryl-tRNA synthetase
91	 44.23	0	114214..114846	-	210	20088990	-	MA0091	-	translin family protein
92	 42.18	0	115645..115938	-	97	20088991	-	MA0092	-	hypothetical protein
93	 50.70	+1	116131..116844	+	237	20088992	-	MA0093	-	hypothetical protein
94	 35.09	-1	116947..117288	-	113	20088993	-	MA0094	-	hypothetical protein
95	 34.50	-1	118418..119704	-	428	20088994	-	MA0095	-	hypothetical protein
96	 47.89	0	119810..122275	-	821	20088995	-	MA0096	-	Hef nuclease
97	 51.93	+1	122464..124302	-	612	20088996	glyS	MA0097	-	glycyl-tRNA synthetase
98	 36.81	-1	124580..125614	+	344	20088997	-	MA0098	-	hypothetical protein
99	 36.86	-1	125996..126307	+	103	20088998	-	MA0099	-	hypothetical protein
100	 42.68	0	126603..126923	+	106	20088999	-	MA0100	-	nucleotidyltransferase
44.25	MEAN

5.60	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.