IslandPath Analysis: Shigella dysenteriae Sd197



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 51.49   STD DEV: 3.86
Shigella dysenteriae Sd197, complete genome - 1..4369232
4271 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 51.52	0	190..255	+	21	82775383	thrL	SDY_0001	-	thr operon leader peptide
2	 52.70	0	336..2798	+	820	82775384	thrA	SDY_0002	-	bifunctional aspartokinase I/homeserine dehydrogenase I
3	 56.38	+1	2800..3732	+	310	82775385	thrB	SDY_0003	-	homoserine kinase
4	 52.91	0	3733..5019	+	428	82775386	thrC	SDY_0004	-	threonine synthase
5	 53.54	0	5233..5529	+	98	82775387	-	SDY_0005	-	hypothetical protein
6	 48.52	0	5682..6458	-	258	82775388	yaaA	SDY_0006	-	hypothetical protein
7	 53.20	0	6749..7951	-	400	82775389	yaaJ	SDY_0007	-	inner membrane transport protein
8	 51.78	0	8230..9183	+	317	82775390	talB	SDY_0008	-	transaldolase B
9	 54.08	0	9298..9885	+	195	82775391	mogA	SDY_0009	-	molybdenum cofactor biosynthesis protein
10	 52.56	0	9920..10486	-	188	82775392	yaaH	SDY_0010	-	hypothetical protein
11	 50.28	0	10635..11348	-	237	82775393	-	SDY_0011	-	hypothetical protein
12	 48.33	0	11374..11733	-	119	82775394	yaaI	SDY_0012	-	hypothetical protein
13	 51.23	0	12155..14071	+	638	82775395	dnaK	SDY_0013	-	molecular chaperone DnaK
14	 55.08	0	14160..15290	+	376	82775396	dnaJ	SDY_0014	-	chaperone protein DnaJ
15	 50.95	0	15394..15603	-	69	82775397	gef	SDY_0015	-	Gef
16	 49.54	0	15865..16080	-	71	82775398	-	SDY_0016	-	iso-IS1 ORF2
17	 53.55	0	16077..16259	-	60	82775399	-	SDY_0017	-	iso-IS1 ORF2
18	 51.50	0	16905..18071	+	388	82775400	nhaA	SDY_0018	-	pH-dependent sodium/proton antiporter
19	 47.57	-1	18131..19036	+	301	82775401	nhaR	SDY_0019	-	transcriptional activator NhaR
20	 36.93	-2	19074..19601	-	175	82775402	-	SDY_0020	-	hypothetical protein
21	 47.11	-1	19592..19816	-	74	82775403	-	SDY_0021	-	hypothetical protein
22	 51.77	0	20011..20406	+	131	82775404	-	SDY_0022	-	iso-IS1 ORF2
23	 54.23	0	20512..20889	-	125	82775405	insB	SDY_0023	-	IS1 ORF2
24	 51.81	0	20934..21209	-	91	82775406	insA	SDY_0024	-	IS1 ORF1
25	 55.77	+1	21788..24385	+	865	82775407	acnB	SDY_0025	-	bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase
26	 51.79	0	24560..24922	+	120	161950172	yacL	SDY_0026	-	hypothetical protein
27	 46.16	-1	24960..25754	-	264	82775409	speD	SDY_0027	-	S-adenosylmethionine decarboxylase
28	 51.21	0	25770..26636	-	288	82775410	speE	SDY_0028	-	spermidine synthase
29	 49.04	0	26742..27212	-	156	82775411	yacC	SDY_0029	-	hypothetical protein
30	 53.97	0	27255..28805	+	516	82775412	yacK	SDY_0030	-	multicopper oxidase
31	 51.81	0	29799..30074	+	91	82779654	insA	SDY_0031	-	IS1 ORF1
32	 54.23	0	30119..30496	+	125	82775413	insB	SDY_0032	-	IS1 ORF2
33	 50.28	0	32224..32760	+	178	161950171	hpt	SDY_0034	-	hypoxanthine phosphoribosyltransferase
34	 50.38	0	32801..33463	-	220	82775415	yadF	SDY_0035	-	carbonic anhydrase
35	 49.41	0	33572..34498	+	308	82775416	yadG	SDY_0036	-	putative ATP-binding component of a transport system
36	 51.23	0	34495..35265	+	256	82775417	yadH	SDY_0037	-	hypothetical protein
37	 49.43	0	35370..35810	+	146	82775418	yadI	SDY_0038	-	putative PTS enzyme II B component
38	 50.48	0	35874..36287	+	137	82775419	-	SDY_0039	-	hypothetical protein
39	 49.29	0	36265..37104	+	279	82775420	yadE	SDY_0040	-	hypothetical protein
40	 52.49	0	37108..37488	-	126	82775421	panD	SDY_0041	-	aspartate alpha-decarboxylase
41	 49.31	0	37762..38562	+	266	82775422	yadD	SDY_0042	-	hypothetical protein
42	 51.81	0	38591..38866	+	91	82775423	insA	SDY_0043	-	IS1 ORF1
43	 53.97	0	38911..39288	+	125	82775424	insB	SDY_0044	-	IS1 ORF2
44	 46.59	-1	39604..39867	-	87	82775425	rpsT	SDY_0045	-	30S ribosomal protein S20
45	 48.40	0	39970..40188	+	72	82775426	-	SDY_0046	-	hypothetical protein
46	 52.87	0	40196..41137	+	313	82775427	ribF	SDY_0047	-	bifunctional riboflavin kinase/FMN adenylyltransferase
47	 55.52	+1	41180..43996	+	938	82775428	ileS	SDY_0048	-	isoleucyl-tRNA synthetase
48	 52.93	0	43996..44490	+	164	82775429	lspA	SDY_0049	-	lipoprotein signal peptidase
49	 54.22	0	44578..45027	+	149	82775430	slpA	SDY_0050	-	FKBX-type 16KD peptidyl-prolyl cis-trans isomerase
50	 54.89	0	45029..45979	+	316	82775431	ispH	SDY_0051	-	4-hydroxy-3-methylbut-2-enyl diphosphate reductase
51	 55.30	0	46045..46959	+	304	82775432	yaaF	SDY_0052	-	ribonucleoside hydrolase RihC
52	 53.04	0	47126..47947	+	273	82775433	dapB	SDY_0053	-	dihydrodipicolinate reductase
53	 52.83	0	48405..49553	+	382	82775434	carA	SDY_0054	-	carbamoyl phosphate synthase small subunit
54	 55.93	+1	49571..52792	+	1073	82775435	carB	SDY_0055	-	carbamoyl phosphate synthase large subunit
55	 45.94	-1	53053..53409	+	118	161950170	caiF	SDY_0056	-	DNA-binding transcriptional activator CaiF
56	 55.07	0	53534..54145	-	203	82775437	caiE	SDY_0057	-	carnitine operon protein CaiE
57	 52.68	0	54130..55023	-	297	82775438	caiD	SDY_0058	-	carnitinyl-CoA dehydratase
58	 50.61	0	55024..56592	-	522	82775439	caiC	SDY_0059	-	putative crotonobetaine/carnitine-CoA ligase
59	 52.22	0	56651..57868	-	405	82775440	caiB	SDY_0060	-	crotonobetainyl-CoA:carnitine CoA-transferase
60	 53.89	0	57997..59139	-	380	82775441	caiA	SDY_0061	-	crotonobetainyl-CoA dehydrogenase
61	 52.08	0	59170..60684	-	504	82775442	caiT	SDY_0062	-	L-carnitine/gamma-butyrobetaine antiporter
62	 52.01	0	61156..61926	+	256	161950169	fixA	SDY_0063	-	putative electron transfer flavoprotein FixA
63	 55.41	+1	61941..62882	+	313	82775444	fixB	SDY_0064	-	putative electron transfer flavoprotein FixB
64	 54.29	0	63169..64218	+	349	82775445	fixC	SDY_0065	-	hypothetical protein
65	 57.29	+1	64215..64502	+	95	82775446	fixX	SDY_0066	-	putative ferredoxin
66	 53.20	0	64560..65480	+	306	82775447	yaaU	SDY_0067	-	putative transport protein
67	 53.85	0	65490..65723	+	77	82775448	-	SDY_0068	-	hypothetical protein
68	 54.80	0	66002..66532	+	176	82775449	yabF	SDY_0069	-	glutathione-regulated potassium-efflux system ancillary protein KefF
69	 54.80	0	66525..68192	+	555	82775450	kefC	SDY_0070	-	K+ efflux antiporter, glutathione-regulated
70	 52.71	0	68384..68863	+	159	82775451	folA	SDY_0071	-	dihydrofolate reductase
71	 49.15	0	68949..69182	+	77	82775452	-	SDY_0072	-	putative antitoxin of gyrase inhibiting toxin-antitoxin system
72	 45.71	-1	69185..69499	+	104	82775453	-	SDY_0073	-	putative toxin of gyrase inhibiting toxin-antitoxin system
73	 54.89	0	69496..70344	-	282	82775454	apaH	SDY_0074	-	diadenosine tetraphosphatase
74	 51.59	0	70351..70728	-	125	82775455	apaG	SDY_0075	-	ApaG
75	 52.92	0	70731..71552	-	273	82775456	ksgA	SDY_0076	-	dimethyladenosine transferase
76	 56.36	+1	71549..72538	-	329	82775457	pdxA	SDY_0077	-	4-hydroxythreonine-4-phosphate dehydrogenase
77	 53.92	0	72538..73824	-	428	82775458	surA	SDY_0078	-	peptidyl-prolyl cis-trans isomerase SurA
78	 51.38	0	73877..76231	-	784	82775459	imp	SDY_0079	-	organic solvent tolerance protein
79	 52.57	0	76486..77301	+	271	82775460	djlA	SDY_0080	-	DNA-J like membrane chaperone protein
80	 39.47	-2	77596..78312	+	238	82775461	yabP	SDY_0081	-	hypothetical protein
81	 54.09	0	78719..79378	-	219	82775462	yabO	SDY_0082	-	23S rRNA/tRNA pseudouridine synthase A
82	 55.07	0	79390..82296	-	968	82775463	hepA	SDY_0083	-	ATP-dependent helicase HepA
83	 51.77	0	83937..84332	-	131	82775464	-	SDY_0084	-	iso-IS1 ORF2
84	 51.81	0	85070..85345	+	91	82775465	insA	SDY_0085	-	IS1 ORF1
85	 54.23	0	85390..85767	+	125	82775466	insB	SDY_0086	-	IS1 ORF2
86	 55.32	0	86437..87132	-	231	82775467	araD	SDY_0088	-	L-ribulose-5-phosphate 4-epimerase
87	 55.49	+1	87300..88802	-	500	82775468	araA	SDY_0089	-	L-arabinose isomerase
88	 57.91	+1	88813..90513	-	566	82775469	araB	SDY_0090	-	ribulokinase
89	 54.90	0	91820..92584	+	254	82775470	yabI	SDY_0092	-	hypothetical protein
90	 56.94	+1	92698..93396	-	232	82775471	thiQ	SDY_0093	-	thiamine transporter ATP-binding subunit
91	 58.47	+1	93380..94990	-	536	82775472	thiP	SDY_0094	-	thiamine transporter membrane protein
92	 53.25	0	94966..95949	-	327	82775473	tbpA	SDY_0095	-	thiamine transporter substrate binding subunit
93	 52.17	0	96649..96924	-	91	82775474	insA	SDY_0096	-	IS1 ORF1
94	 55.46	+1	97447..99105	-	552	82775475	yabN	SDY_0097	-	transcriptional regulator SgrR
95	 52.31	0	99433..100038	-	201	82775476	leuD	SDY_0098	-	isopropylmalate isomerase small subunit
96	 56.03	+1	100049..101449	-	466	82775477	leuC	SDY_0099	-	isopropylmalate isomerase large subunit
97	 55.31	0	101452..102543	-	363	161950168	leuB	SDY_0100	-	3-isopropylmalate dehydrogenase
98	 53.05	0	102543..104114	-	523	82775479	leuA	SDY_0101	-	2-isopropylmalate synthase
99	 47.62	-1	104207..104290	-	27	82775480	leuL	SDY_0102	-	leu operon leader peptide
100	 49.54	0	104941..105156	+	71	82775481	-	SDY_0103	-	iso-IS1 ORF2
51.49	MEAN

3.86	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.