IslandPath Analysis: Aromatoleum aromaticum EbN1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 64.74   STD DEV: 4.42
Azoarcus sp. EbN1, complete genome - 1..4296230
4133 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 68.61	0	2..412	-	136	56475433	-	ebB253	-	hypothetical protein
2	 61.88	0	487..1176	+	229	56475434	-	ebA2	-	putative bacteriophage-related transcriptional repressor
3	 62.30	0	1572..2120	+	182	56475435	-	ebA5	-	hypothetical protein
4	 60.69	0	2251..2685	-	144	56475436	pilE1	ebA6	-	class II pilin protein PilE
5	 69.61	+1	2899..3441	+	180	56475437	-	ebA7	-	hypothetical protein
6	 66.48	0	3596..4651	+	351	56475438	-	ebA8	-	hypothetical protein
7	 65.81	0	4947..5297	+	116	56475439	-	ebB1	-	hypothetical protein
8	 65.84	0	5335..6183	+	282	56475440	-	ebA11	-	hypothetical protein
9	 70.09	+1	6589..7728	+	379	56475441	-	ebA15	-	hypothetical protein
10	 68.23	0	8474..9112	+	212	56475442	-	ebA22	-	hypothetical protein
11	 65.71	0	9144..9665	+	173	56475443	-	ebA23	-	hypothetical protein
12	 63.95	0	9868..10752	-	294	56475444	-	ebA26	-	hypothetical protein
13	 64.48	0	10796..11803	+	335	56475445	int	ebA27	-	phage-related integrase
14	 66.83	0	11947..13206	-	419	56475446	int	ebA29	-	phage integrase
15	 62.16	0	13335..14132	-	265	56475447	-	ebA31	-	serine protease
16	 65.62	0	14129..15085	-	318	56475448	-	ebA33	-	lytic transglycosylase
17	 59.41	-1	15142..16422	-	426	56475449	-	ebA35	-	UDP-glucose/GDP-mannose dehydrogenase family protein
18	 62.83	0	16476..19262	-	928	56475450	-	ebA36	-	hypothetical protein
19	 63.58	0	19265..20623	-	452	56475451	-	ebA37	-	response regulatory protein
20	 62.01	0	20616..22826	-	736	56475452	-	ebA38	-	sensory transduction histidine kinase
21	 62.27	0	22816..24201	-	461	56475453	sthA	ebA40	-	putative glycosyltransferase
22	 58.19	-1	24283..24459	-	58	56475454	-	ebA41	-	hypothetical protein
23	 63.17	0	24509..25453	-	314	56475455	lipP	ebA43	-	lipase
24	 62.73	0	25558..25887	-	109	56475456	-	ebA45	-	hypothetical protein
25	 68.99	0	25902..26159	-	85	56475457	-	ebA46	-	hypothetical protein
26	 52.08	-2	26183..26278	-	31	56475458	-	ebA47	-	hypothetical protein
27	 64.73	0	26435..28864	-	809	56475459	phbC	ebA48	-	putative poly(3-hydroxyalkanoate) synthetase
28	 64.56	0	29268..30170	+	300	56475460	-	ebA50	-	hypothetical protein
29	 58.67	-1	30217..30516	-	99	56475461	-	ebA51	-	hypothetical protein
30	 55.91	-1	30394..30672	+	92	56475462	-	ebD23	-	hypothetical protein
31	 54.26	-2	30538..30666	-	42	56475463	-	ebA52	-	hypothetical protein
32	 66.12	0	30663..30845	-	60	56475464	-	ebA53	-	hypothetical protein
33	 65.59	0	30799..31263	+	154	56475465	-	ebA54	-	hypothetical protein
34	 64.81	0	31295..32155	-	286	56475466	-	ebA56	-	putative kinase
35	 61.67	0	32575..32814	-	79	56475467	-	ebD24	-	hypothetical protein
36	 64.59	0	32849..33475	-	208	56475468	-	ebA59	-	SAM-dependent methyltransferase
37	 64.96	0	33775..34302	-	175	56475469	def	ebA62	-	peptide deformylase
38	 67.10	0	34345..34803	-	152	56475470	dtd	ebA64	-	D-tyrosyl-tRNA deacylase
39	 63.61	0	35278..36324	-	348	56475471	-	ebA65	-	hypothetical protein
40	 64.57	0	36321..37226	-	301	56475472	-	ebA67	-	hypothetical protein
41	 63.45	0	37576..37824	-	82	56475473	-	ebB2	-	hypothetical protein
42	 68.03	0	38061..38795	-	244	56475474	istB	ebA70	-	transposition helper protein
43	 68.46	0	38818..40377	-	519	56475475	istA	ebA72	-	transposase
44	 60.52	0	40583..40891	-	102	56475476	-	ebB3	-	hypothetical protein
45	 68.83	0	40976..42268	-	430	56475477	tnp1	ebA75	-	IS4 family transposase
46	 64.05	0	42788..43894	-	368	56475478	tnp2	ebA78	-	transposase (IS4)
47	 51.06	-2	44590..45012	-	140	56475479	-	ebA82	-	hypothetical protein
48	 63.82	0	45169..46293	-	374	56475480	tnp3	ebA84	-	transposase (IS4)
49	 62.59	0	47029..47469	+	146	56475481	-	ebA88	-	hypothetical protein
50	 59.47	-1	47354..48631	-	425	56475482	-	ebA89	-	hypothetical protein
51	 60.34	0	47881..48291	+	136	56475483	-	ebA90	-	hypothetical protein
52	 61.30	0	48364..48624	+	86	56475484	-	ebD25	-	hypothetical protein
53	 60.67	0	48802..49335	+	177	56475485	-	ebA93	-	hypothetical protein
54	 61.70	0	49380..49661	+	93	56475486	-	ebA95	-	hypothetical protein
55	 60.80	0	49697..50071	+	124	56475487	-	ebA96	-	hypothetical protein
56	 61.99	0	49993..51597	-	534	56475488	trbL	ebA97	-	plasmid like TrbL protein, component of conjugation system
57	 63.82	0	51663..52787	+	374	56475489	tnp4	ebA99	-	transposase (IS4)
58	 60.64	0	53145..53426	-	93	56475490	-	ebA101	-	hypothetical protein
59	 61.06	0	53423..53761	-	112	56475491	-	ebB4	-	hypothetical protein
60	 60.00	-1	54087..54731	-	214	56475492	-	ebA104	-	hypothetical protein
61	 64.63	0	54728..55021	-	97	56475493	-	ebA106	-	hypothetical protein
62	 60.20	-1	55040..55240	+	66	56475494	-	ebA107	-	hypothetical protein
63	 62.63	0	55271..55369	+	32	56475495	-	ebA108	-	hypothetical protein
64	 70.45	+1	55740..56795	-	351	56475496	sua5	ebA110	-	putative translation factor (SUA5)
65	 66.24	0	56782..57942	-	386	56475497	purK	ebA114	-	phosphoribosylaminoimidazole carboxylase ATPase subunit
66	 67.27	0	58025..58519	-	164	56475498	purE	ebA116	-	phosphoribosylaminoimidazole carboxylase catalytic subunit
67	 66.99	0	58524..59462	-	312	56475499	folD	ebA118	-	FolD bifunctional protein
68	 68.14	0	59459..60067	-	202	56475500	iorB	ebA121	-	indolepyruvate oxidoreductase subunit B
69	 66.99	0	60073..61944	-	623	56475501	iorA	ebA122	-	indolepyruvate ferredoxin oxidoreductase, subunit alpha
70	 64.31	0	62348..62983	-	211	56475502	-	ebA125	-	two-component response regulator
71	 67.58	0	62958..65489	-	843	56475503	-	ebA126	-	two-component sensor kinase
72	 66.46	0	65665..67098	+	477	56475504	-	ebA127	-	branched-chain amino acid ABC transporter,periplasmic amino acid-binding protein
73	 63.30	0	67518..70193	+	891	56475505	aceE	ebA133	-	pyruvate dehydrogenase subunit E1
74	 66.04	0	70215..71966	+	583	56475506	aceF	ebA135	-	dihydrolipoamide acetyltransferase
75	 67.15	0	71979..73826	+	615	56475507	lpd	ebA136	-	pyruvate dehydrogenase multienzyme complex,dihydrolipoamide dehydrogenase component
76	 70.27	+1	73942..75330	-	462	56475508	-	ebA137	-	hypothetical protein
77	 71.66	+1	75323..76945	-	540	56475509	-	ebA138	-	hypothetical protein
78	 51.06	-2	76963..77244	-	93	56475510	-	ebA139	-	hypothetical protein
79	 63.24	0	77241..77444	-	67	56475511	-	ebA140	-	hypothetical protein
80	 66.42	0	77514..78752	-	412	56475512	-	ebA142	-	hypothetical protein
81	 65.53	0	78749..79450	-	233	56475513	-	ebA145	-	hypothetical protein
82	 62.22	0	79715..80209	+	164	56475514	-	ebD26	-	hypothetical protein
83	 66.28	0	80212..80733	-	173	56475515	-	ebA148	-	hypothetical protein
84	 64.31	0	80946..81284	+	112	56475516	-	ebB5	-	putative pterin-4-alpha-carbinolamine dehydratase
85	 69.34	+1	81673..83469	+	598	56475517	poxB	ebA151	-	pyruvate decarboxylase
86	 66.86	0	83535..86075	+	846	56475518	-	ebA152	-	hypothetical protein
87	 70.87	+1	86114..87256	-	380	56475519	-	ebA154	-	hypothetical protein
88	 66.87	0	87261..89768	-	835	56475520	coxA	ebA156	-	putative cytochrome c oxidase subunit I
89	 71.67	+1	89765..90604	-	279	56475521	coxB	ebA158	-	chain II protein of putative cytochrome c oxidase
90	 68.65	0	90635..91138	+	167	56475522	-	ebA159	-	hypothetical protein
91	 62.20	0	91271..91762	+	163	56475523	-	ebA161	-	hypothetical protein
92	 65.41	0	92200..95226	+	1008	56475524	-	ebA163	-	sensory box/GGDEF family protein
93	 67.05	0	95412..97493	-	693	56475525	-	ebA165	-	putative solute:Na+ symporter
94	 65.53	0	97564..99492	-	642	56475526	-	ebA166	-	exonuclease
95	 60.22	-1	99736..100107	-	123	56475527	-	ebA168	-	response regulator domain-containing protein
96	 66.27	0	100137..102893	-	918	56475528	-	ebA169	-	fusion Na-dependent permease/histidine kinase domain-containing protein
97	 61.62	0	102905..103102	-	65	56475529	-	ebA170	-	hypothetical protein
98	 62.89	0	103136..103294	-	52	56475530	-	ebA171	-	hypothetical protein
99	 64.81	0	103300..105288	-	662	56475531	acsA	ebA172	-	acetyl-CoA synthetase
100	 65.30	0	105531..107063	+	510	56475532	fumA	ebA173	-	fumarate hydratase
64.74	MEAN

4.42	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.