IslandPath Analysis: Francisella tularensis subsp. holarctica OSU18



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 32.50   STD DEV: 3.56
Francisella tularensis subsp. holarctica OSU18, complete genome - 1..1895727
1555 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 31.23	0	1..1476	+	491	115313982	dnaA	FTH_0001	-	DNA-directed DNA replication initiator protein
2	 27.90	-1	1513..2616	+	367	115313983	dnaN	FTH_0002	-	DNA-directed DNA polymerase
3	 31.56	0	3062..3942	-	293	115313984	isftu1	FTH_0004	-	ISFtu1 transposase
4	 30.62	0	3933..4670	+	245	115313985	-	FTH_0005	-	CPA1 family monovalent cation:proton (H+) antiporter-1
5	 34.85	0	6907..7830	+	307	115313986	-	FTH_0008	-	protease
6	 35.24	0	7884..8459	+	191	115313987	-	FTH_0009	-	outer membrane protein OmpH
7	 30.26	0	8595..9017	+	140	115313988	-	FTH_0010	-	sulfur transferase
8	 35.78	0	9045..9494	+	149	115313989	secB1	FTH_0011	-	preprotein translocase subunit SecB
9	 38.33	+1	9516..10595	+	359	115313990	recA	FTH_0012	-	recombination protein RecA
10	 27.81	-1	10582..11034	+	150	115313991	-	FTH_0013	-	OraA/RecX protein
11	 34.17	0	11207..11683	+	158	115313992	ssb	FTH_0014	-	single-stranded DNA binding protein
12	 33.94	0	11789..12946	+	385	115313993	ackA	FTH_0015	-	acetate kinase
13	 35.62	0	12956..15052	+	698	115313994	pta	FTH_0016	-	phosphate acetyltransferase
14	 31.44	0	15937..16817	-	293	115313995	isftu1	FTH_0018	-	ISFtu1 transposase
15	 34.91	0	17312..19084	-	590	115313996	aspS	FTH_0020	-	aspartyl-tRNA synthetase
16	 34.09	0	19258..20439	-	393	115313997	-	FTH_0021	-	major facilitator transporter
17	 30.09	0	22907..24109	-	400	115313998	-	FTH_0024	-	HAAAP family serine/threonine permease
18	 24.36	-2	24457..24690	-	77	115313999	-	FTH_0025	-	hypothetical protein
19	 32.68	0	26074..26994	-	306	115314000	pyrB	FTH_0027	-	aspartate carbamoyltransferase
20	 36.50	+1	27136..30423	-	1095	115314001	carB	FTH_0028	-	carbamoyl phosphate synthase large subunit
21	 37.36	+1	30428..31594	-	388	115314002	carA	FTH_0029	-	carbamoyl phosphate synthase small subunit
22	 34.00	0	32011..33066	+	351	115314003	-	FTH_0030	-	acid phosphatase
23	 30.25	0	33190..33870	-	226	115314004	tpmT	FTH_0031	-	thiopurine S-methyltransferase
24	 38.38	+1	34002..35348	+	448	115314005	pyrC	FTH_0032	-	dihydroorotase
25	 25.94	-1	35376..36416	-	346	115314006	-	FTH_0033	-	hypothetical protein
26	 35.13	0	36953..37231	+	92	115314007	-	FTH_0035	-	hypothetical protein
27	 32.61	0	37620..38171	+	183	115314008	-	FTH_0036	-	hypothetical protein
28	 32.02	0	38287..39351	-	354	115314009	-	FTH_0037	-	hypothetical protein
29	 28.16	-1	39326..40291	-	321	115314010	-	FTH_0038	-	HlyD family secretion protein
30	 28.68	-1	40380..40787	-	135	115314011	-	FTH_0039	-	hypothetical protein
31	 31.49	0	40913..41782	+	289	115314012	lysR	FTH_0040	-	LysR family transcriptional regulator
32	 31.69	0	43410..43958	+	182	115314013	-	FTH_0043	-	chorismate mutase
33	 35.76	0	44013..47387	-	1124	115314014	-	FTH_0044	-	transglutaminase
34	 35.19	0	47654..48298	+	214	115314015	pyrF	FTH_0045	-	orotidine-5'-phosphate decarboxylase
35	 33.60	0	48288..49046	+	252	115314016	pyrD	FTH_0046	-	dihydroorotate oxidase
36	 32.16	0	49410..49580	-	56	115314017	-	FTH_0047	-	hypothetical protein
37	 33.48	0	49584..50246	-	220	115314018	tyrA	FTH_0048	-	prephenate dehydrogenase
38	 31.28	0	50514..50951	-	145	115314019	dtd	FTH_0049	-	D-tyrosyl-tRNA deacylase
39	 31.56	0	54129..55009	-	293	115314020	isftu1	FTH_0052	-	ISFtu1 transposase
40	 29.89	0	55033..55584	-	183	115314021	-	FTH_0053	-	hypothetical protein
41	 34.68	0	55855..56520	-	221	115314022	-	FTH_0054	-	nitroreductase
42	 30.83	0	56745..56864	+	39	115314023	-	FTH_0055	-	hypothetical protein
43	 33.77	0	56923..57615	+	230	115314024	-	FTH_0056	-	hypothetical protein
44	 33.00	0	57612..58817	-	401	115314025	-	FTH_0057	-	HAAAP family aromatic amino acid transporter
45	 31.55	0	58917..59534	+	205	115314026	gidB	FTH_0058	-	glucose-inhibited cell division protein
46	 33.18	0	59531..60199	+	222	115314027	-	FTH_0059	-	hypothetical protein
47	 31.86	0	60192..61076	-	294	115314028	-	FTH_0060	-	hypothetical protein
48	 30.61	0	62277..63413	+	378	115314029	-	FTH_0062	-	major facilitator transporter
49	 35.01	0	65894..66490	+	198	115314030	gmhA	FTH_0064	-	phosphoheptose isomerase
50	 29.97	0	66498..66854	+	118	115314031	omlA	FTH_0065	-	outer membrane lipoprotein
51	 33.70	0	66928..67200	-	90	115314032	rpsT	FTH_0066	-	30S ribosomal protein S20
52	 37.65	+1	67470..69254	+	594	115314033	lepA	FTH_0067	-	GTP-binding protein LepA
53	 35.95	0	69202..70347	+	381	115314034	trmU	FTH_0068	-	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
54	 34.05	0	70367..71347	-	326	115314035	-	FTH_0069	-	hypothetical protein
55	 33.33	0	71441..71959	-	172	115314036	def	FTH_0070	-	peptide deformylase
56	 35.36	0	71962..72405	-	147	115314037	ribH	FTH_0071	-	riboflavin synthase beta subunit
57	 35.56	0	72415..73626	-	403	115314038	ribA	FTH_0072	-	GTP-cyclohydrolase II
58	 31.02	0	73619..74224	-	201	115314039	ribB	FTH_0073	-	riboflavin synthase subunit alpha
59	 34.08	0	74217..75284	-	355	115314040	ribD	FTH_0074	-	bifunctional 5-amino-6-(5-phosphoribosylamino)uracil reductase/ diaminohydroxyphosphoribosylaminopyrimidine deaminase
60	 31.14	0	78255..78848	-	197	115314041	cybB	FTH_0078	-	cytochrome b561
61	 32.73	0	79820..80971	+	383	115314042	nhaA	FTH_0080	-	NhaA family Na(+)/H(+) antiporter
62	 29.72	0	81036..81755	+	239	115314043	-	FTH_0081	-	hypothetical protein
63	 34.28	0	81761..82501	-	246	115314044	-	FTH_0082	-	acyltransferase
64	 33.60	0	82515..83267	-	250	115314045	-	FTH_0083	-	acyltransferase
65	 37.04	+1	83430..83753	-	107	115314046	-	FTH_0084	-	ferredoxin
66	 31.15	0	83984..84625	+	213	115314047	-	FTH_0085	-	hypothetical protein
67	 35.49	0	85358..86518	-	386	115314048	purT	FTH_0087	-	phosphoribosylglycinamide formyltransferase 2
68	 36.11	+1	86572..88764	-	730	115314049	-	FTH_0088	-	chitinase
69	 35.85	0	89015..91594	-	859	115314050	clpB	FTH_0089	-	endopeptidase Clp
70	 29.66	0	92540..92893	+	117	115314051	-	FTH_0091	-	hypothetical protein
71	 35.43	0	92948..93757	-	269	115314052	trpA	FTH_0092	-	tryptophan synthase subunit alpha
72	 39.46	+1	93757..94947	-	396	115314053	trpB	FTH_0093	-	tryptophan synthase subunit beta
73	 31.14	0	95034..96539	-	501	115314054	-	FTH_0094	-	carboxypeptidase
74	 35.73	0	96475..97893	-	472	115314055	-	FTH_0095	-	chloride channel protein
75	 32.85	0	98364..98774	-	136	115314056	-	FTH_0097	-	hypothetical protein
76	 31.55	0	98795..99187	-	130	115314057	-	FTH_0098	-	hypothetical protein
77	 31.44	0	99988..100868	+	293	115314058	isftu1	FTH_0100	-	ISFtu1 transposase
78	 32.15	0	102493..103083	+	196	115314059	iglA2	FTH_0103	-	intracellular growth locus A protein
79	 31.13	0	103073..104617	+	514	115314060	iglB2	FTH_0104	-	intracellular growth locus B protein
80	 34.43	0	104628..105263	+	211	115314061	iglC2	FTH_0105	-	intracellular growth locus C protein
81	 29.24	0	105284..106480	+	398	115314062	iglD2	FTH_0106	-	intracellular growth locus D protein
82	 24.48	-2	106487..107062	-	191	115314063	-	FTH_0107	-	hypothetical protein
83	 26.36	-1	107080..111066	-	1328	115314064	pdpC2	FTH_0108	-	protein PdpC
84	 23.51	-2	111106..111879	-	257	115314065	-	FTH_0109	-	hypothetical protein
85	 26.13	-1	111845..112996	-	383	115314066	-	FTH_0110	-	hypothetical protein
86	 27.88	-1	113018..113641	-	207	115314067	-	FTH_0111	-	hypothetical protein
87	 26.14	-1	113654..115084	-	476	115314068	-	FTH_0112	-	hypothetical protein
88	 33.14	0	115097..115618	-	173	115314069	-	FTH_0113	-	hypothetical protein
89	 30.10	0	117355..117849	-	164	115314070	-	FTH_0115	-	hypothetical protein
90	 23.81	-2	117862..118239	-	125	115314071	-	FTH_0116	-	hypothetical protein
91	 26.02	-1	118229..121510	-	1093	115314072	pdpB2	FTH_0117	-	protein PdpB
92	 27.00	-1	121515..123977	-	820	115314073	pdpA2	FTH_0118	-	protein PdpA
93	 33.19	0	129549..130265	+	238	115314074	-	FTH_0119	-	formate dehydrogenase
94	 33.56	0	132582..133469	-	295	115314075	ilvE	FTH_0122	-	branched-chain-amino-acid transaminase
95	 37.17	+1	133870..136503	-	877	115314076	ppdK	FTH_0123	-	pyruvate phosphate dikinase
96	 33.47	0	137330..139573	-	747	115314077	-	FTH_0124	-	FeoB family ferrous iron (Fe2+) uptake protein
97	 29.24	0	139674..140162	-	162	115314078	-	FTH_0125	-	hypothetical protein
98	 31.56	0	140119..140999	-	293	115314079	isftu1	FTH_0126	-	ISFtu1 transposase
99	 27.97	-1	142771..143739	-	322	115314080	-	FTH_0129	-	lipopolysaccharide biosynthesis protein
100	 32.96	0	143928..145778	+	616	115314081	-	FTH_0130	-	ribonuclease II
32.50	MEAN

3.56	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.